| Clone Name | basd26m12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ163912.1| Bacteriophage F10, complete genome Length = 39199 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 361 tccggagacctaccgggacgag 382 |||||||||||||||||||||| Sbjct: 14437 tccggagacctaccgggacgag 14458
>gb|DQ386648.1| Astatotilapia burtoni clone BAC 26M7 platelet-derived growth factor receptor beta a (pdgfrba) and colony-stimulating factor 1 receptor a (csf1ra) genes, complete cds Length = 97628 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 tccaaaggctgctcctcaactctcc 64 ||||||||||||||||||| ||||| Sbjct: 87126 tccaaaggctgctcctcaagtctcc 87102
>emb|X52255.1|HSCST3G Human CST3 gene for cystatin C Length = 7292 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aggagtggaggagggagatg 328 |||||||||||||||||||| Sbjct: 419 aggagtggaggagggagatg 438
>ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosome 20 Length = 477159 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aggagtggaggagggagatg 328 |||||||||||||||||||| Sbjct: 277917 aggagtggaggagggagatg 277936
>ref|XM_849502.1| PREDICTED: Canis familiaris similar to S-adenosylhomocysteine hydrolase-like 1 (LOC611790), mRNA Length = 3920 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 ggagtggaggagggagatgt 329 |||||||||||||||||||| Sbjct: 26 ggagtggaggagggagatgt 45
>emb|AL121894.26|HSA218C14 Human DNA sequence from clone RP11-218C14 on chromosome 20 Contains the 3' end of a novel gene, two genes for novel proteins similar to cystatin 9-like (mouse) (CST9L), the CST9L gene for cystatin 9-like (mouse), a cystatin 9-like (mouse) pseudogene, the CST3 gene for cystatin C, a novel gene and a CpG island, complete sequence Length = 141079 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aggagtggaggagggagatg 328 |||||||||||||||||||| Sbjct: 108099 aggagtggaggagggagatg 108080
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tttggccttgattgatcgtc 475 |||||||||||||||||||| Sbjct: 25121953 tttggccttgattgatcgtc 25121972
>dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03 Length = 142377 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tttggccttgattgatcgtc 475 |||||||||||||||||||| Sbjct: 68139 tttggccttgattgatcgtc 68158
>emb|X61681.1|HSCYSTC1 Homo sapiens partial gene for cystatin C, exon 1 and joined CDS Length = 1662 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 aggagtggaggagggagatg 328 |||||||||||||||||||| Sbjct: 255 aggagtggaggagggagatg 274
>gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, complete sequence Length = 177464 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 ccgggacgagtgggatggtggtga 396 |||||| ||||||||||||||||| Sbjct: 171836 ccgggaagagtgggatggtggtga 171813
>gb|AC132354.2| Mus musculus BAC clone RP24-112H7 from 12, complete sequence Length = 180298 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 373 ccgggacgagtgggatggtggtga 396 |||||| ||||||||||||||||| Sbjct: 68566 ccgggaagagtgggatggtggtga 68543
>emb|AL732485.8| Mouse DNA sequence from clone RP23-70G24 on chromosome 2, complete sequence Length = 92562 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 agtggaacggaggttgagga 529 |||||||||||||||||||| Sbjct: 26293 agtggaacggaggttgagga 26274 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,015,127 Number of Sequences: 3902068 Number of extensions: 4015127 Number of successful extensions: 65403 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65357 Number of HSP's gapped (non-prelim): 46 length of query: 628 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 605 effective length of database: 17,143,297,704 effective search space: 10371695110920 effective search space used: 10371695110920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)