ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26m11 |
|---|---|
| Clone Library Name | barley_pub |
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 37.7 bits (86), Expect = 0.031 Identities = 25/77 (32%), Positives = 35/77 (45%) Frame = +1 Query: 286 NGGGVGSSVQVARKCVVVMEGNPHPGAVKGRMSFQNFNPSIDKLNDEASGRPTQSASPSN 465 NG + AR+ VV M+ N H G +GR SF + A+ T SAS S+ Sbjct: 378 NGASPQERLMAARRAVVTMQWNTHLGR-RGR-SFAPLPTGGMSIATSAASSSTSSASSSS 435 Query: 466 SQQDSANTSRVDDVSAS 516 S D +N + D + S Sbjct: 436 SMNDGSNAKKTSDAAVS 452
>NUB1_BOVIN (Q8MJ87) NEDD8 ultimate buster 1 (Fragment)| Length = 221 Score = 32.3 bits (72), Expect = 1.3 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 3/126 (2%) Frame = +1 Query: 295 GVGSSVQVARKCVVVMEGNPHPGAVKGRMSFQNFNPSIDKLNDEASGRPTQSASPSNSQQ 474 G+G S++ AR+ + GN ++ + NP + LND A + SPS + Sbjct: 47 GMGYSMRAARQALHQAAGN-----LEEALKILLHNPQLWWLNDSAPESNNRQQSPSQEKI 101 Query: 475 DSANTSRVDDVSA-SRFRSF--NVDSSESISLNELKRKEPELEMETPPLRKLPKTTGQNV 645 D D V+A + R F NV + ++ R P+L++ P T+ + Sbjct: 102 DQLVYMGFDAVAAKAALRVFRDNVQLAAQTLVHNGGRLPPDLQLSAEDSSSTPSTSPSDS 161 Query: 646 DGRGSS 663 G S+ Sbjct: 162 AGTSSA 167
>DSPP_MOUSE (P97399) Dentin sialophosphoprotein precursor (Dentin matrix| protein 3) (DMP-3) [Contains: Dentin phosphoprotein (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)] Length = 934 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/62 (33%), Positives = 33/62 (53%) Frame = +1 Query: 382 SFQNFNPSIDKLNDEASGRPTQSASPSNSQQDSANTSRVDDVSASRFRSFNVDSSESISL 561 S N + S D +D +S + +S S+ DS+ +S D SAS S + DSS+S S Sbjct: 682 SSSNSSDSSDS-SDSSSSSDSSDSSDSSDSSDSSGSSDSSDSSASSDSSSSSDSSDSSSS 740 Query: 562 NE 567 ++ Sbjct: 741 SD 742
>BUR1_CANGA (Q6FQ83) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 667 Score = 30.8 bits (68), Expect = 3.8 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Frame = +1 Query: 343 EGNPHPGAVKGRMSFQNFNPSIDKLNDEASGRPTQSASPSNSQQDSAN------TSRVDD 504 EGN H G+++ R++ N + + +P QS +S +D N +S V+ Sbjct: 492 EGNNHSGSLRNRITPSNMGTHSNPRAENMGSKPYQSEGRYSSNEDRKNGYNRGYSSSVNS 551 Query: 505 VSASRFRSFNVDSSESISLNELKR 576 +R +FN +SI+ L R Sbjct: 552 RYNNR-AAFNETEDQSITTTTLNR 574
>PER_DROYA (Q24767) Period circadian protein| Length = 1208 Score = 30.8 bits (68), Expect = 3.8 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +1 Query: 400 PSIDKLNDEASGRPTQSASPSNSQQDSANTSRVDDVSASRFRSFNVDSSESISLNELKRK 579 PS+ + D S P S++P+N+++ + + DD+ S F SF S I + Sbjct: 1117 PSV--MGDYNSELPCSSSNPANNKKYTDSNGNSDDMDGSSFSSF---YSSFIKTTDGSES 1171 Query: 580 EPELEMETPPLRKL 621 P++E + P RKL Sbjct: 1172 PPDIEKD-PKHRKL 1184
>VIT1_FUNHE (Q90508) Vitellogenin-1 precursor (Vitellogenin I) (VTG I) [Contains:| Lipovitellin-1 (LV1); Phosvitin (PV); Lipovitellin-2 (LV2)] Length = 1704 Score = 30.0 bits (66), Expect = 6.5 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%) Frame = +1 Query: 382 SFQNFNPSIDKLNDEASGRPTQSASPSNSQQDSANTSRVDDV----------SASRFRSF 531 S + + S + +S R + S+S S+S S ++ RV+ SAS SF Sbjct: 1135 SSSSSSSSSSSSSSSSSSRRSSSSSSSSSSSSSRSSRRVNSTRSSSSSSRTSSASSLASF 1194 Query: 532 NVDSSESISLNELKRKE 582 DSS S S ++ + KE Sbjct: 1195 FSDSSSSSSSSDRRSKE 1211
>CYAA_NEUCR (Q01631) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2300 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 8/46 (17%) Frame = +1 Query: 343 EGNPHPGAVKGRMSFQNFN--------PSIDKLNDEASGRPTQSAS 456 E +P PGA F N N PS+D LN +AS RP+Q++S Sbjct: 1240 EASPSPGAYP----FPNANKNGLLSRTPSMDDLNGDASRRPSQASS 1281
>PER_DROME (P07663) Period circadian protein (Clock-6 protein) (CLK-6)| Length = 1224 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +1 Query: 400 PSIDKLNDEASGRPTQSASPSNSQQDSANTSRVDDVSASRFRSFNVDSSESISLNELKRK 579 PS+ + D S P S++P+N+++ + + DD+ S F SF S I + Sbjct: 1133 PSV--MGDYNSDPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSF---YSSFIKTTDGSES 1187 Query: 580 EPELEMETPPLRKL 621 P+ E + P RKL Sbjct: 1188 PPDTEKD-PKHRKL 1200
>YETS2_HUMAN (Q9ULM3) YEATS domain-containing protein 2| Length = 1422 Score = 30.0 bits (66), Expect = 6.5 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%) Frame = +1 Query: 397 NPSIDKLNDEASGRPTQSASPSNSQQD--SANTSRVDDVS------ASRFRSFNVDSSES 552 +P+I K + P++S+SP+N + + SAN S D +S + + + N+D E Sbjct: 109 HPAIKKFLES----PSRSSSPANQRAETPSANHSESDSLSQHNDFLSDKDNNSNMDIEER 164 Query: 553 ISLNELKRKEPELEMETPPLRKLPKTTGQNVD 648 +S N +R +T + KT +N D Sbjct: 165 LSNNMEQRPSRNTGRDTSRITGSHKTEQRNAD 196
>CPC1_CRYPA (P87090) Cross-pathway control protein 1| Length = 247 Score = 29.6 bits (65), Expect = 8.5 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +1 Query: 397 NPSIDKLNDEASGRPTQSASPSNSQQDSANTSRVDDVSASR 519 +PS+D + E + RP+Q+ S S S S V VSA R Sbjct: 132 SPSVDSEDFEPARRPSQARKSSASSSPSGRHSSVSGVSARR 172 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.127 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,793,904 Number of Sequences: 219361 Number of extensions: 1201940 Number of successful extensions: 2969 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2958 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
