ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27b08 |
|---|---|
| Clone Library Name | barley_pub |
>PUM2_HUMAN (Q8TB72) Pumilio homolog 2 (Pumilio-2)| Length = 1066 Score = 33.5 bits (75), Expect = 0.31 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -2 Query: 460 GRIHFRRTGWGATHASAASIILVQMRAGTGNRG 362 G +R T WGA+H S + I+VQ R+G G G Sbjct: 41 GDDEWRETAWGASHHSMSQPIMVQRRSGQGFHG 73
>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1575 Score = 32.7 bits (73), Expect = 0.53 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Frame = +2 Query: 197 GPPQGPG-CRRSSISPDSAASTRKSVGNESTPTRSARIQ-PGPAVVATGEPPRLTYNASV 370 G P PG RR +P S +TRK S P+ A + PGPA +T P + Sbjct: 1146 GAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVI 1205 Query: 371 TCPCTH 388 + P +H Sbjct: 1206 SAPQSH 1211
>STNB_DROME (Q24212) Protein stoned-B (StonedB) (Stn-B)| Length = 1262 Score = 32.0 bits (71), Expect = 0.90 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 219 AAVP-QSRRIRPPPRANPSEMNPPRPDPPG 305 AAVP + I+ PPR P PPRP PPG Sbjct: 223 AAVPLPATPIKQPPRPPPPRPAPPRPAPPG 252
>ETV4_MOUSE (P28322) ETS translocation variant 4 (Polyomavirus enhancer| activator 3) (PEA3 protein) Length = 555 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +2 Query: 209 GPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPGPAVVATGEPP 346 GPG + +S+ P A S G+ P + PGP V A+ P Sbjct: 21 GPGAQAASLRPSPATLVVSSPGHAEHPPAAPAQTPGPQVSASARGP 66
>SP15_STRGR (P19471) 55.5 kDa and 49.5 kDa sporulation proteins (ORF1590 and| ORF1422) Length = 529 Score = 30.0 bits (66), Expect = 3.4 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +2 Query: 197 GPPQGPGCRRSSISPDSAASTRKSVGNESTP--TRSARIQPGPAVVATGEPPRLTYN 361 G P G G R +PD+ + G +TP S +QPGP VA P R+ ++ Sbjct: 175 GSPGGAGARGPGAAPDARGAHLLHPGG-ATPGAAGSVPLQPGPEAVADASPLRVGHS 230
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +2 Query: 200 PPQGPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPGPAVVAT 334 P PG + A+T +S G+ +TPT + R P P V+ T Sbjct: 2426 PSSTPGTTWILTELTTTATTTESTGSTATPTSTLRTAPPPKVLTT 2470
>PUM2_MOUSE (Q80U58) Pumilio homolog 2| Length = 1066 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -2 Query: 460 GRIHFRRTGWGATHASAASIILVQMRAGTGNRG 362 G +R T WG +H S + I+VQ R+G G Sbjct: 41 GDDEWRETAWGTSHHSMSQPIMVQRRSGQSFHG 73
>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:| Proline-rich peptide SP-A (PRP-SP-A); Proline-rich peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)] Length = 676 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +3 Query: 210 DQGAAVPQSRRIRPPPRANPSEMNPPRPDPPGS 308 +QG A P +R PPP P PP P PPG+ Sbjct: 69 EQGPAPPGAR---PPPGPPPPGPPPPGPAPPGA 98
>CSPG2_BOVIN (P81282) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) Length = 3381 Score = 29.6 bits (65), Expect = 4.4 Identities = 15/29 (51%), Positives = 19/29 (65%) Frame = +2 Query: 242 DSAASTRKSVGNESTPTRSARIQPGPAVV 328 DSAA+TRKS ++ TPT+S R VV Sbjct: 1757 DSAAATRKSFTSQMTPTQSERETTSSTVV 1785
>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)| Length = 1157 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +2 Query: 206 QGPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPGPAVVATG 337 +GPG + SS+S +S+ + + + S + R+ GP +V G Sbjct: 10 RGPGMKGSSLSSESSPVSSPATNHSSPASTPKRVPMGPIIVPPG 53
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +3 Query: 201 LHKDQGAAVPQSRRIRPPPRANPSEMNPPRPDPP 302 LH+ +G P + PPP PS PP P P Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496
>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22| Length = 881 Score = 29.3 bits (64), Expect = 5.8 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +2 Query: 200 PPQGPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPGPAVVATGEPPRL 352 PP G +S SP + S ++S + S R R PG ++ G+ PR+ Sbjct: 16 PPPG-----TSYSPQPSVSRKRSPPSRSPSPRRRRSPPGDSLKENGDAPRI 61
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 29.3 bits (64), Expect = 5.8 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +3 Query: 201 LHKDQGAAVPQSRRIRPPPRANPSEMNPPRPDPP 302 LH+ +G P + PPP PS PP P P Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496
>MK07_HUMAN (Q13164) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (ERK4) (BMK1 kinase) Length = 815 Score = 29.3 bits (64), Expect = 5.8 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = +2 Query: 200 PPQGPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPGPAVVATGEP 343 PP GP + + P SA ST V + P PGPA TG P Sbjct: 604 PPPGPLAQPTGPQPQSAGSTSGPVPQPACP------PPGPAPHPTGPP 645
>VE4_HPV08 (P06425) Probable protein E4| Length = 229 Score = 25.0 bits (53), Expect(2) = 6.2 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 298 RPDPTGPRRRSHRRAAPLD 354 RPD +GP + SH + P D Sbjct: 40 RPDSSGPLQNSHNKPKPKD 58 Score = 22.7 bits (47), Expect(2) = 6.2 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +3 Query: 249 PPPRANPSEMNPPRPDPPG 305 PPPR P + PRPD G Sbjct: 28 PPPRPPPPPLT-PRPDSSG 45
>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 644 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/40 (42%), Positives = 19/40 (47%) Frame = +2 Query: 200 PPQGPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPGP 319 PP PG S SP A ST + E P R+A I P P Sbjct: 39 PPDAPG----SESPALACSTPATPSGEDPPARAAPIAPRP 74
>CAPU_DROME (Q24120) Protein cappuccino| Length = 1059 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +3 Query: 249 PPPRANPSEMNPPRPDPPGS 308 PPP AN PP P PPGS Sbjct: 511 PPPLANYGAPPPPPPPPPGS 530
>IAA10_ARATH (Q38828) Auxin-responsive protein IAA10 (Indoleacetic acid-induced| protein 10) Length = 261 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +2 Query: 224 RSSISPDSAASTRKSVGNESTPTRSARIQPGPAVVATGEPPRLTY 358 RSS+S S++ TR+S S + A VA G PP TY Sbjct: 59 RSSLSSSSSSLTRESGTKRSADSSPAAASNATRQVAVGWPPLRTY 103
>CSP_PLABA (P23093) Circumsporozoite protein precursor (CS)| Length = 347 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 246 RPPPRANPSEMNPPRP-DPPGSN 311 +PPP NP++ PP P DPP N Sbjct: 91 QPPPPPNPNDPPPPNPNDPPPPN 113
>ZIC2_MOUSE (Q62520) Zinc finger protein ZIC 2 (Zinc finger protein of the| cerebellum 2) Length = 530 Score = 28.9 bits (63), Expect = 7.6 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -2 Query: 427 ATHASAASIILVQMRAGTGNRGVVGQAGRLSGGYDGGA 314 A A+AA++ V AG+G+ G G + SGG GGA Sbjct: 463 AAAAAAAAVSAVHRGAGSGSSGSGGGSAAGSGGGGGGA 500
>CSP_PLABE (P06915) Circumsporozoite protein precursor (CS)| Length = 339 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 246 RPPPRANPSEMNPPRP-DPPGSN 311 +PPP NP++ PP P DPP N Sbjct: 91 QPPPPPNPNDPPPPNPNDPPPPN 113
>CN004_MOUSE (Q8K3X4) Protein C14orf4 homolog| Length = 775 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +3 Query: 228 PQSRRIRPPPRANPSEMNPPRPDPPGS 308 P S + PPP PP P PPG+ Sbjct: 245 PASAAVLPPPHGLGGSRGPPTPAPPGA 271
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.9 bits (63), Expect = 7.6 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Frame = +3 Query: 207 KDQGAAVP--QSRRIRPPPR--ANPSEMNPPRPDPP 302 K + AA+P Q ++ PPR A P++ PP P PP Sbjct: 967 KQRAAAIPPIQVTKVHEPPREDAAPTKPAPPAPPPP 1002
>NELFA_DROME (Q86NP2) Negative elongation factor A homolog| Length = 1248 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +2 Query: 263 KSVGNES---TPTRSARIQPGPAVVATGEPPRLTYNASVTCP 379 K+ G+ S TP R A+ Q AVV++ PP + +A+V P Sbjct: 785 KTSGSSSVVMTPLRQAQPQQATAVVSSNPPPLVATSAAVVSP 826
>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)| Length = 1300 Score = 28.5 bits (62), Expect = 9.9 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 12/82 (14%) Frame = +2 Query: 194 QGPPQGPGCRRSSISPDSAASTRKSVGNESTPTRSARIQPG-----PAVVATGEPPR--- 349 Q PP PG + SP + ++R + A + PG V AT E P+ Sbjct: 529 QLPPTVPGAHGYADSPSATPASRSPQRPSPASSECASLSPGLNHVESGVSATAESPQSLL 588 Query: 350 ----LTYNASVTCPCTHLHEDD 403 +T V+ PCT+ D Sbjct: 589 GGPPVTKAEPVSLPCTNARAGD 610
>PRA_MYCTU (O53426) Proline-rich antigen homolog| Length = 240 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +3 Query: 204 HKDQGAAVPQSRRIRPPPRANPSEMNPPRPDPPG 305 H+ AA P PPP + PP P PPG Sbjct: 24 HEPPPAAPPGGSGYAPPPPPSSGSGYPPPPPPPG 57
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 315 PGWIRADLVGVDSFPTDLRVEAAESGEIEERRHPGPCGGP 196 PG + L G D+ TDL+ E + G + E PGP G P Sbjct: 241 PGTVIVTLTGPDN-RTDLKGEKGDKGAMGEPGPPGPSGLP 279
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 28.5 bits (62), Expect = 9.9 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +3 Query: 207 KDQGAAVPQSRRIRPPPRANPSEMNPPRPDPPGS 308 K Q A PQ PPP P + P +P P S Sbjct: 18 KQQPAPPPQPPESPPPPPLPPQQQQPAQPGPAAS 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,753,856 Number of Sequences: 219361 Number of extensions: 1136971 Number of successful extensions: 7373 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 5250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7131 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
