| Clone Name | basd27b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 50 cctcgccgccgaccctgcacctccgcc 76 ||||||||||||| ||||||||||||| Sbjct: 34956 cctcgccgccgacgctgcacctccgcc 34982
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 50 cctcgccgccgaccctgcacctccgcc 76 ||||||||||||| ||||||||||||| Sbjct: 110977 cctcgccgccgacgctgcacctccgcc 110951
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 50 cctcgccgccgaccctgcacctccgcc 76 ||||||||||||| ||||||||||||| Sbjct: 2756630 cctcgccgccgacgctgcacctccgcc 2756656 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ctcgccggattcggccgcctccac 258 |||||||||| ||||||||||||| Sbjct: 18970503 ctcgccggatccggccgcctccac 18970480
>gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, complete sequence Length = 185857 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 acctgtccctgcacgcatctgc 392 |||||||||||||||||||||| Sbjct: 140574 acctgtccctgcacgcatctgc 140553
>ref|XM_543553.2| PREDICTED: Canis familiaris similar to serine/threonine kinase 22A (spermiogenesis associated) (predicted) (LOC486427), mRNA Length = 1398 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcacgaggatgatgctcgc 409 ||||||||||||||||||||| Sbjct: 415 ctgcacgaggatgatgctcgc 435
>ref|XM_845420.1| PREDICTED: Canis familiaris similar to serine/threonine kinase 22B (spermiogenesis associated) (predicted) (LOC608391), mRNA Length = 1378 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ctgcacgaggatgatgctcgc 409 ||||||||||||||||||||| Sbjct: 415 ctgcacgaggatgatgctcgc 435
>emb|AL935274.14| Zebrafish DNA sequence from clone CH211-249C2 in linkage group 4, complete sequence Length = 121896 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgtcggacctccggccgctcc 122 ||||||||||||||||||||| Sbjct: 94527 cgtcggacctccggccgctcc 94507
>emb|CR847906.11| Zebrafish DNA sequence from clone DKEYP-4C4 in linkage group 6, complete sequence Length = 198346 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgtcggacctccggccgctcc 122 ||||||||||||||||||||| Sbjct: 129068 cgtcggacctccggccgctcc 129048
>emb|BX511066.9| Zebrafish DNA sequence from clone CH211-129P6 in linkage group 14, complete sequence Length = 165835 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgtcggacctccggccgctcc 122 ||||||||||||||||||||| Sbjct: 93845 cgtcggacctccggccgctcc 93825
>emb|BX510934.6| Zebrafish DNA sequence from clone DKEY-40J3 in linkage group 4 Contains the gene for a novel protein containing a protein kinase domain and three CpG islands, complete sequence Length = 179094 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgtcggacctccggccgctcc 122 ||||||||||||||||||||| Sbjct: 33691 cgtcggacctccggccgctcc 33671
>emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in linkage group 4, complete sequence Length = 204160 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgtcggacctccggccgctcc 122 ||||||||||||||||||||| Sbjct: 112034 cgtcggacctccggccgctcc 112014
>gb|AF414867.1| Anaplasma centrale strain vaccine from Australia 60 kDa heat shock protein (groEL) gene, complete cds Length = 1650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 cctccggccgctccgccacct 129 ||||||||||||||||||||| Sbjct: 1625 cctccggccgctccgccacct 1605
>gb|AF414866.1| Anaplasma centrale from South Africa from Rhipicephalus simus 60 kDa heat shock protein (groEL) gene, complete cds Length = 1650 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 cctccggccgctccgccacct 129 ||||||||||||||||||||| Sbjct: 1625 cctccggccgctccgccacct 1605
>ref|XM_464763.1| Oryza sativa (japonica cultivar-group), mRNA Length = 435 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 51 ctcgccgccgaccctgcacctccgccacgccc 82 ||||||||||||| | ||||||||||||||| Sbjct: 322 ctcgccgccgaccttttacctccgccacgccc 353
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 ctcgccggattcggccgcctccac 258 |||||||||| ||||||||||||| Sbjct: 137881 ctcgccggatccggccgcctccac 137858
>ref|XM_368252.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00992.4) partial mRNA Length = 1113 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 aaggaccagggtgccgccgt 226 |||||||||||||||||||| Sbjct: 670 aaggaccagggtgccgccgt 689
>gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO), ArsB (arsB), ArsR1 (arsR1), ArsC (arsC), and ArsT (arsT) genes, complete cds; and unknown genes Length = 7568 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 caaggaccagggtgccgccg 225 |||||||||||||||||||| Sbjct: 1097 caaggaccagggtgccgccg 1078
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 227 tcctcaatctcgccggattcggccgcct 254 ||||||||| || ||||||||||||||| Sbjct: 4551991 tcctcaatcccggcggattcggccgcct 4552018
>dbj|AK087213.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030034K24 product:chloride channel calcium activated 1, full insert sequence Length = 3022 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tgaatccaccccgaccagat 296 |||||||||||||||||||| Sbjct: 2156 tgaatccaccccgaccagat 2175
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 51 ctcgccgccgaccctgcacctccgccacgccc 82 ||||||||||||| | ||||||||||||||| Sbjct: 7218602 ctcgccgccgaccttttacctccgccacgccc 7218633
>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0620H05 Length = 161808 Score = 40.1 bits (20), Expect = 6.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 51 ctcgccgccgaccctgcacctccgccacgccc 82 ||||||||||||| | ||||||||||||||| Sbjct: 118539 ctcgccgccgaccttttacctccgccacgccc 118570 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,942,526 Number of Sequences: 3902068 Number of extensions: 1942526 Number of successful extensions: 37418 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37210 Number of HSP's gapped (non-prelim): 208 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)