ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome... 46 0.11
2gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 46 0.11
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
4gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, com... 44 0.42
5ref|XM_543553.2| PREDICTED: Canis familiaris similar to serine/t... 42 1.7
6ref|XM_845420.1| PREDICTED: Canis familiaris similar to serine/t... 42 1.7
7emb|AL935274.14| Zebrafish DNA sequence from clone CH211-249C2 i... 42 1.7
8emb|CR847906.11| Zebrafish DNA sequence from clone DKEYP-4C4 in ... 42 1.7
9emb|BX511066.9| Zebrafish DNA sequence from clone CH211-129P6 in... 42 1.7
10emb|BX510934.6| Zebrafish DNA sequence from clone DKEY-40J3 in l... 42 1.7
11emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in ... 42 1.7
12gb|AF414867.1| Anaplasma centrale strain vaccine from Australia ... 42 1.7
13gb|AF414866.1| Anaplasma centrale from South Africa from Rhipice... 42 1.7
14ref|XM_464763.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
15gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
16ref|XM_368252.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 40 6.6
17gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO... 40 6.6
18dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.6
19dbj|AK087213.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 6.6
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
21dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6

>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04,
             complete sequence
          Length = 88812

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 50    cctcgccgccgaccctgcacctccgcc 76
             ||||||||||||| |||||||||||||
Sbjct: 34956 cctcgccgccgacgctgcacctccgcc 34982



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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 50     cctcgccgccgaccctgcacctccgcc 76
              ||||||||||||| |||||||||||||
Sbjct: 110977 cctcgccgccgacgctgcacctccgcc 110951



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 50      cctcgccgccgaccctgcacctccgcc 76
               ||||||||||||| |||||||||||||
Sbjct: 2756630 cctcgccgccgacgctgcacctccgcc 2756656



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 235      ctcgccggattcggccgcctccac 258
                |||||||||| |||||||||||||
Sbjct: 18970503 ctcgccggatccggccgcctccac 18970480



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>gb|AC124333.13| Mus musculus chromosome 1, clone RP24-511E9, complete sequence
          Length = 185857

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 371    acctgtccctgcacgcatctgc 392
              ||||||||||||||||||||||
Sbjct: 140574 acctgtccctgcacgcatctgc 140553



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>ref|XM_543553.2| PREDICTED: Canis familiaris similar to serine/threonine kinase 22A
           (spermiogenesis associated) (predicted) (LOC486427),
           mRNA
          Length = 1398

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 389 ctgcacgaggatgatgctcgc 409
           |||||||||||||||||||||
Sbjct: 415 ctgcacgaggatgatgctcgc 435



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>ref|XM_845420.1| PREDICTED: Canis familiaris similar to serine/threonine kinase 22B
           (spermiogenesis associated) (predicted) (LOC608391),
           mRNA
          Length = 1378

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 389 ctgcacgaggatgatgctcgc 409
           |||||||||||||||||||||
Sbjct: 415 ctgcacgaggatgatgctcgc 435



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>emb|AL935274.14| Zebrafish DNA sequence from clone CH211-249C2 in linkage group 4,
             complete sequence
          Length = 121896

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cgtcggacctccggccgctcc 122
             |||||||||||||||||||||
Sbjct: 94527 cgtcggacctccggccgctcc 94507



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>emb|CR847906.11| Zebrafish DNA sequence from clone DKEYP-4C4 in linkage group 6, complete
              sequence
          Length = 198346

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cgtcggacctccggccgctcc 122
              |||||||||||||||||||||
Sbjct: 129068 cgtcggacctccggccgctcc 129048



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>emb|BX511066.9| Zebrafish DNA sequence from clone CH211-129P6 in linkage group 14,
             complete sequence
          Length = 165835

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cgtcggacctccggccgctcc 122
             |||||||||||||||||||||
Sbjct: 93845 cgtcggacctccggccgctcc 93825



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>emb|BX510934.6| Zebrafish DNA sequence from clone DKEY-40J3 in linkage group 4 Contains
             the gene for a novel protein containing a protein kinase
             domain and three CpG islands, complete sequence
          Length = 179094

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   cgtcggacctccggccgctcc 122
             |||||||||||||||||||||
Sbjct: 33691 cgtcggacctccggccgctcc 33671



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>emb|BX571664.8| Zebrafish DNA sequence from clone DKEYP-82H4 in linkage group 4, complete
              sequence
          Length = 204160

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    cgtcggacctccggccgctcc 122
              |||||||||||||||||||||
Sbjct: 112034 cgtcggacctccggccgctcc 112014



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>gb|AF414867.1| Anaplasma centrale strain vaccine from Australia 60 kDa heat shock
            protein (groEL) gene, complete cds
          Length = 1650

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 109  cctccggccgctccgccacct 129
            |||||||||||||||||||||
Sbjct: 1625 cctccggccgctccgccacct 1605



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>gb|AF414866.1| Anaplasma centrale from South Africa from Rhipicephalus simus 60 kDa
            heat shock protein (groEL) gene, complete cds
          Length = 1650

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 109  cctccggccgctccgccacct 129
            |||||||||||||||||||||
Sbjct: 1625 cctccggccgctccgccacct 1605



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>ref|XM_464763.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 435

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 51  ctcgccgccgaccctgcacctccgccacgccc 82
           ||||||||||||| |  |||||||||||||||
Sbjct: 322 ctcgccgccgaccttttacctccgccacgccc 353



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>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01,
              complete sequence
          Length = 164709

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 235    ctcgccggattcggccgcctccac 258
              |||||||||| |||||||||||||
Sbjct: 137881 ctcgccggatccggccgcctccac 137858



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>ref|XM_368252.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00992.4) partial mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 aaggaccagggtgccgccgt 226
           ||||||||||||||||||||
Sbjct: 670 aaggaccagggtgccgccgt 689



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>gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO), ArsB (arsB),
            ArsR1 (arsR1), ArsC (arsC), and ArsT (arsT) genes,
            complete cds; and unknown genes
          Length = 7568

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  caaggaccagggtgccgccg 225
            ||||||||||||||||||||
Sbjct: 1097 caaggaccagggtgccgccg 1078



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 227     tcctcaatctcgccggattcggccgcct 254
               ||||||||| || |||||||||||||||
Sbjct: 4551991 tcctcaatcccggcggattcggccgcct 4552018



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>dbj|AK087213.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030034K24 product:chloride channel
            calcium activated 1, full insert sequence
          Length = 3022

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  tgaatccaccccgaccagat 296
            ||||||||||||||||||||
Sbjct: 2156 tgaatccaccccgaccagat 2175



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 51      ctcgccgccgaccctgcacctccgccacgccc 82
               ||||||||||||| |  |||||||||||||||
Sbjct: 7218602 ctcgccgccgaccttttacctccgccacgccc 7218633



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>dbj|AP005394.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0620H05
          Length = 161808

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 51     ctcgccgccgaccctgcacctccgccacgccc 82
              ||||||||||||| |  |||||||||||||||
Sbjct: 118539 ctcgccgccgaccttttacctccgccacgccc 118570


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,942,526
Number of Sequences: 3902068
Number of extensions: 1942526
Number of successful extensions: 37418
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37210
Number of HSP's gapped (non-prelim): 208
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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