| Clone Name | basd27b06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_550351.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 323 bits (163), Expect = 4e-85 Identities = 349/411 (84%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 494 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 553 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 554 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 613 Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183 ||||||||||||| | | |||||| | |||||||| || ||||||||||||||||| || Sbjct: 614 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 673 Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243 |||||| ||||| |||| || || |||||||| || |||| || ||||||||||| Sbjct: 674 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 733 Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303 ||| ||||| || ||||||||| | |||| || | ||||| |||||||| |||||| | Sbjct: 734 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 793 Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363 ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| | Sbjct: 794 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 853 Query: 364 ggcggtgatacacggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||||||| | |||||| | |||||||| |||||||||||||| |||||||| Sbjct: 854 ggcggtggtccacggcaacaaggtgcccctctacggcgccggcggcgggct 904 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 943 tggacttcgacctcacctcccggggatacgtcatcggcaagctggtgagggtgacgcaca 1002 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 1003 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 1041
>dbj|AK106071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H07, full insert sequence Length = 1307 Score = 323 bits (163), Expect = 4e-85 Identities = 349/411 (84%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 492 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 551 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 552 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 611 Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183 ||||||||||||| | | |||||| | |||||||| || ||||||||||||||||| || Sbjct: 612 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 671 Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243 |||||| ||||| |||| || || |||||||| || |||| || ||||||||||| Sbjct: 672 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 731 Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303 ||| ||||| || ||||||||| | |||| || | ||||| |||||||| |||||| | Sbjct: 732 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 791 Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363 ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| | Sbjct: 792 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 851 Query: 364 ggcggtgatacacggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||||||| | |||||| | |||||||| |||||||||||||| |||||||| Sbjct: 852 ggcggtggtccacggcaacaaggtgcccctctacggcgccggcggcgggct 902 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 941 tggacttcgacctcacctcccggggatacgtcatcggcaagctggtgagggtgacgcaca 1000 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 1001 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 1039
>dbj|AK073824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070N04, full insert sequence Length = 1427 Score = 323 bits (163), Expect = 4e-85 Identities = 349/411 (84%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 491 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 550 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 551 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 610 Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183 ||||||||||||| | | |||||| | |||||||| || ||||||||||||||||| || Sbjct: 611 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 670 Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243 |||||| ||||| |||| || || |||||||| || |||| || ||||||||||| Sbjct: 671 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 730 Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303 ||| ||||| || ||||||||| | |||| || | ||||| |||||||| |||||| | Sbjct: 731 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 790 Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363 ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| | Sbjct: 791 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 850 Query: 364 ggcggtgatacacggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||||||| | |||||| | |||||||| |||||||||||||| |||||||| Sbjct: 851 ggcggtggtccacggcaacaaggtgcccctctacggcgccggcggcgggct 901 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 940 tggacttcgacctcacctcccggggatacgtcatcggcaagctggtgagggtgacgcaca 999 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 1000 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 1038
>dbj|AK060328.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A10, full insert sequence Length = 1266 Score = 323 bits (163), Expect = 4e-85 Identities = 349/411 (84%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 494 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 553 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 554 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 613 Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183 ||||||||||||| | | |||||| | |||||||| || ||||||||||||||||| || Sbjct: 614 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 673 Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243 |||||| ||||| |||| || || |||||||| || |||| || ||||||||||| Sbjct: 674 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 733 Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303 ||| ||||| || ||||||||| | |||| || | ||||| |||||||| |||||| | Sbjct: 734 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 793 Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363 ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| | Sbjct: 794 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 853 Query: 364 ggcggtgatacacggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||||||| | |||||| | |||||||| |||||||||||||| |||||||| Sbjct: 854 ggcggtggtccacggcaacaaggtgcccctctacggcgccggcggcgggct 904 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 943 tggacttcgacctcacctcccggggatacgtcatcggcaagctggtgagggtgacgcaca 1002 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 1003 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 1041
>dbj|AK058295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F03, full insert sequence Length = 1463 Score = 323 bits (163), Expect = 4e-85 Identities = 349/411 (84%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 481 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 540 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 541 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 600 Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183 ||||||||||||| | | |||||| | |||||||| || ||||||||||||||||| || Sbjct: 601 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 660 Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243 |||||| ||||| |||| || || |||||||| || |||| || ||||||||||| Sbjct: 661 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 720 Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303 ||| ||||| || ||||||||| | |||| || | ||||| |||||||| |||||| | Sbjct: 721 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 780 Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363 ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| | Sbjct: 781 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 840 Query: 364 ggcggtgatacacggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||||||| | |||||| | |||||||| |||||||||||||| |||||||| Sbjct: 841 ggcggtggtccacggcaacaaggtgcccctctacggcgccggcggcgggct 891 Score = 101 bits (51), Expect = 3e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| ||||||||||||| |||||| |||||||||||| Sbjct: 930 tggacttcgacctcacctcccggggatacgtcatcggcaggctggtgagggtgacgcaca 989 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 990 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 1028
>gb|AY105213.1| Zea mays PCO065280 mRNA sequence Length = 731 Score = 224 bits (113), Expect = 3e-55 Identities = 259/307 (84%), Gaps = 3/307 (0%) Strand = Plus / Plus Query: 230 gtgtacaaccctgcttccatgttcgggatccatgtctcctcgggccccgtccgcctgctc 289 |||||||||||||| | ||||| |||||||||||| |||| |||||| |||| ||| || Sbjct: 27 gtgtacaaccctgccacaatgtttgggatccatgtcacctccggccccatccgtctgatc 86 Query: 290 tattccgagatcgccatcggggttggacaggtccgcaagtactaccagccgagcaggagc 349 ||||| |||||| | || | || || |||||||||| ||||||||||||||| | |||| Sbjct: 87 tattcagagatctcaatagcagtcggccaggtccgcaggtactaccagccgaggaagagc 146 Query: 350 caccggctggtgtcggcggtgatacacggcgagaaggtgccgctctacggcgccgggggc 409 |||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct: 147 caccggacggtgacggcggtgatccacggcgagaaggtgccgctgtacggcgccgggggc 206 Query: 410 gggctctcgctgtccgggaac---gacggcgcgacggtgcccctcaccgtggacttcgag 466 || || |||||||| || | | ||| | | |||||||||| || |||||||||| Sbjct: 207 ggcctgacgctgtccacgagcgcgggcgggggggcggtgcccctgacgctggacttcgac 266 Query: 467 ctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcacagggcgcacgtg 526 ||| ||||||||||||||| ||||||| ||| || |||||||||||||||||||||||| Sbjct: 267 ctcacctcccggggctacgtgatcggcaggctcgtgcgggtgacgcacagggcgcacgtg 326 Query: 527 acgtgcc 533 ||||||| Sbjct: 327 acgtgcc 333
>gb|AY108252.1| Zea mays PCO090236 mRNA sequence Length = 1456 Score = 202 bits (102), Expect = 9e-49 Identities = 330/406 (81%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||| |||||||||||| |||||||| || || ||||||||| ||| |||| |||| Sbjct: 536 cggcgatagcggcctctcccgccgctgccagatcatactcggcttcctcaccttcgtcct 595 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| |||||||||||||||| || ||||||||||| || Sbjct: 596 cctcttcaccgtcttctgcctcatcatctggggcgccgcccggccgtacgagcccgaggt 655 Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183 | ||||||||||| | | ||||| |||||||||| || || ||||| ||||||||||| Sbjct: 656 catcgtcaagagcttggtgatggacgacttctacgcgggtgaaggcacggaccacagcgg 715 Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243 ||||| || || ||||||| |||||||| || |||| || ||||||||||| Sbjct: 716 cgttccaacaaaattggtcacaacaaactgctctctgcacatagctgtctacaaccctgc 775 Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303 | ||||| || || |||||| | || |||||| ||| |||| | ||||| |||||| | Sbjct: 776 cacaatgtttggaattcatgtcacttctggccccatccacctgatgtattcagagatccc 835 Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363 || | || || ||||| || | ||| ||||||||||| | |||||||||| ||||| | Sbjct: 836 aatagcagtcggtcaggttcggaggtattaccagccgaggaagagccaccggatggtgac 895 Query: 364 ggcggtgatacacggcgagaaggtgccgctctacggcgccgggggc 409 |||||| || |||||||||||||||||||| ||||||||||||||| Sbjct: 896 ggcggtcatccacggcgagaaggtgccgctgtacggcgccgggggc 941 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 476 cggggctacgtcatcggcaagctggtccgggtgacgcacagggcgcacgtgacgtgccgc 535 ||||||||||| ||||||||||| || ||||||||||||| || |||||||||||||| | Sbjct: 1008 cggggctacgtgatcggcaagctcgtgcgggtgacgcacaaggtgcacgtgacgtgcccc 1067 Query: 536 atcaccgtcgacgccaaga 554 || ||| |||||||||| Sbjct: 1068 gtcgtcgtggacgccaaga 1086
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 155 bits (78), Expect = 2e-34 Identities = 117/130 (90%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 3195287 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 3195346 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 3195347 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 3195406 Query: 124 cgtcgtcaag 133 |||||||||| Sbjct: 3195407 cgtcgtcaag 3195416 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 3197405 tggacttcgacctcacctcccggggatacgtcatcggcaagctggtgagggtgacgcaca 3197464 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 3197465 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 3197503 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 317 caggtccgcaagtactaccagccgagcaggagccaccggctggtgtcggcggtgatacac 376 ||||| |||| ||||||||||||||| | |||||||||| ||||| |||||||| | ||| Sbjct: 3197269 caggttcgcaggtactaccagccgaggaagagccaccggttggtgacggcggtggtccac 3197328 Query: 377 ggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||| | |||||||| |||||||||||||| |||||||| Sbjct: 3197329 ggcaacaaggtgcccctctacggcgccggcggcgggct 3197366 Score = 93.7 bits (47), Expect = 6e-16 Identities = 146/179 (81%) Strand = Plus / Plus Query: 143 atggataacttctacgccggagagggcacagaccacagcggggttccgaccaagatggtc 202 |||||| | |||||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct: 3196291 atggatgatttctacgctggtgagggcacagaccacagtggggttccaaccaaattggtt 3196350 Query: 203 accctcaactgctccctcaacatgatcgtgtacaaccctgcttccatgttcgggatccat 262 || || |||||||| || |||| || |||||||||||||| ||||| || |||||| Sbjct: 3196351 acactgaactgctctctgcacatagctgtatacaaccctgcttcaatgtttggaatccat 3196410 Query: 263 gtctcctcgggccccgtccgcctgctctattccgagatcgccatcggggttggacaggt 321 ||| | |||| || | ||||| |||||||| |||||| | ||||||||||||||||| Sbjct: 3196411 gtcacgacgggtcctattcgccttctctattcagagatctctatcggggttggacaggt 3196469
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 155 bits (78), Expect = 2e-34 Identities = 117/130 (90%) Strand = Plus / Plus Query: 4 cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63 |||||||| |||||||||| |||||||| || ||| ||||||||| || ||||| |||| Sbjct: 149472 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 149531 Query: 64 gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123 |||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 149532 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 149591 Query: 124 cgtcgtcaag 133 |||||||||| Sbjct: 149592 cgtcgtcaag 149601 Score = 109 bits (55), Expect = 1e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 456 tggacttcgagctcgtctcccggggctacgtcatcggcaagctggtccgggtgacgcaca 515 |||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 151590 tggacttcgacctcacctcccggggatacgtcatcggcaagctggtgagggtgacgcaca 151649 Query: 516 gggcgcacgtgacgtgccgcatcaccgtcgacgccaaga 554 || |||||||||||||| |||| |||||||||||||| Sbjct: 151650 aggtgcacgtgacgtgccccatcgtcgtcgacgccaaga 151688 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Plus Query: 317 caggtccgcaagtactaccagccgagcaggagccaccggctggtgtcggcggtgatacac 376 ||||| |||| ||||||||||||||| | |||||||||| ||||| |||||||| | ||| Sbjct: 151454 caggttcgcaggtactaccagccgaggaagagccaccggttggtgacggcggtggtccac 151513 Query: 377 ggcgagaaggtgccgctctacggcgccgggggcgggct 414 ||| | |||||||| |||||||||||||| |||||||| Sbjct: 151514 ggcaacaaggtgcccctctacggcgccggcggcgggct 151551 Score = 93.7 bits (47), Expect = 6e-16 Identities = 146/179 (81%) Strand = Plus / Plus Query: 143 atggataacttctacgccggagagggcacagaccacagcggggttccgaccaagatggtc 202 |||||| | |||||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct: 150476 atggatgatttctacgctggtgagggcacagaccacagtggggttccaaccaaattggtt 150535 Query: 203 accctcaactgctccctcaacatgatcgtgtacaaccctgcttccatgttcgggatccat 262 || || |||||||| || |||| || |||||||||||||| ||||| || |||||| Sbjct: 150536 acactgaactgctctctgcacatagctgtatacaaccctgcttcaatgtttggaatccat 150595 Query: 263 gtctcctcgggccccgtccgcctgctctattccgagatcgccatcggggttggacaggt 321 ||| | |||| || | ||||| |||||||| |||||| | ||||||||||||||||| Sbjct: 150596 gtcacgacgggtcctattcgccttctctattcagagatctctatcggggttggacaggt 150654
>ref|NM_188588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 966 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 67 cttcaccgtcatctgcctcatcgtctgggg 96 ||||||| || ||||||||||||||||||| Sbjct: 435 cttcaccctcgtctgcctcatcgtctgggg 464
>ref|XM_466774.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1686 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatctgcctcatcg 89 |||||||||||||||||||| |||||||| Sbjct: 898 tcctgctcttcaccgtcatcatcctcatcg 927
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 378 gcgagaaggtgccgctctacggcgcc 403 ||||| |||||||||||||||||||| Sbjct: 2498422 gcgaggaggtgccgctctacggcgcc 2498397
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 aggtgccgctctacggcgccgg 405 |||||||||||||||||||||| Sbjct: 27124800 aggtgccgctctacggcgccgg 27124779 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatctgcctcatcg 89 |||||||||||||||||||| |||||||| Sbjct: 24615464 tcctgctcttcaccgtcatcatcctcatcg 24615493
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 67 cttcaccgtcatctgcctcatcgtctgggg 96 ||||||| || ||||||||||||||||||| Sbjct: 7095851 cttcaccctcgtctgcctcatcgtctgggg 7095822 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 54 gcttcctcctgctcttcaccgtcatctgcctcatcgtctggggcg 98 ||||| |||| || |||||| || ||||||||||| ||||||||| Sbjct: 42663945 gcttcgtcctcctgttcaccatcttctgcctcatcatctggggcg 42663901
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 67 cttcaccgtcatctgcctcatcgtctgggg 96 ||||||| || ||||||||||||||||||| Sbjct: 83431 cttcaccctcgtctgcctcatcgtctgggg 83402
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 aggtgccgctctacggcgccgg 405 |||||||||||||||||||||| Sbjct: 21249 aggtgccgctctacggcgccgg 21228
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 384 aggtgccgctctacggcgccgg 405 |||||||||||||||||||||| Sbjct: 96449 aggtgccgctctacggcgccgg 96428
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatctgcctcatcg 89 |||||||||||||||||||| |||||||| Sbjct: 129565 tcctgctcttcaccgtcatcatcctcatcg 129594
>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_C01 Length = 124548 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatctgcctcatcg 89 |||||||||||||||||||| |||||||| Sbjct: 60013 tcctgctcttcaccgtcatcatcctcatcg 60042
>dbj|AK119627.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E07, full insert sequence Length = 1159 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 67 cttcaccgtcatctgcctcatcgtctgggg 96 ||||||| || ||||||||||||||||||| Sbjct: 539 cttcaccctcgtctgcctcatcgtctgggg 568
>dbj|AK073500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044J15, full insert sequence Length = 1255 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 384 aggtgccgctctacggcgccgg 405 |||||||||||||||||||||| Sbjct: 824 aggtgccgctctacggcgccgg 845
>dbj|AK070657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H15, full insert sequence Length = 1686 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatctgcctcatcg 89 |||||||||||||||||||| |||||||| Sbjct: 898 tcctgctcttcaccgtcatcatcctcatcg 927
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 ccggctggtgtcggcggtgat 372 ||||||||||||||||||||| Sbjct: 2246154 ccggctggtgtcggcggtgat 2246134
>gb|AC136746.15| Mus musculus chromosome 5, clone RP23-151C5, complete sequence Length = 195530 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 gggggcgggctctcgctgtcc 424 ||||||||||||||||||||| Sbjct: 193806 gggggcgggctctcgctgtcc 193786
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458E05 Length = 193577 Score = 42.1 bits (21), Expect = 2.0 Identities = 39/45 (86%) Strand = Plus / Minus Query: 54 gcttcctcctgctcttcaccgtcatctgcctcatcgtctggggcg 98 ||||| |||| || |||||| || ||||||||||| ||||||||| Sbjct: 184828 gcttcgtcctcctgttcaccatcttctgcctcatcatctggggcg 184784
>gb|AC153488.1| Tribolium castaneum BAC T.cast_C24H10 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 40580 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 390 cgctctacggcgccgggggcgggctctc 417 |||||| ||||||||| ||||||||||| Sbjct: 25594 cgctctgcggcgccggcggcgggctctc 25567
>gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 137018 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 390 cgctctacggcgccgggggcgggctctc 417 |||||| ||||||||| ||||||||||| Sbjct: 28212 cgctctgcggcgccggcggcgggctctc 28239
>ref|XM_470603.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 gtgccgcatcaccgtcgacg 548 |||||||||||||||||||| Sbjct: 1068 gtgccgcatcaccgtcgacg 1087
>ref|XM_473275.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2313 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tctcctcgggccccgtccgc 283 |||||||||||||||||||| Sbjct: 302 tctcctcgggccccgtccgc 321
>ref|XM_473121.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1353 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatc 79 |||||||||||||||||||| Sbjct: 788 tcctgctcttcaccgtcatc 807
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tccgcctgctctattccgagatcg 302 ||||| |||||||||||||||||| Sbjct: 1160097 tccgcgtgctctattccgagatcg 1160120
>ref|XM_588913.2| PREDICTED: Bos taurus similar to Glycerol-3-phosphate transporter (G-3-P transporter) (G-3-P permease) (Solute carrier family 37 member 1) (LOC511558), mRNA Length = 2495 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gcttcctcctgctcttcacc 73 |||||||||||||||||||| Sbjct: 2108 gcttcctcctgctcttcacc 2127
>gb|BC053205.1| Danio rerio platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit a, mRNA (cDNA clone MGC:64021 IMAGE:6793127), complete cds Length = 1786 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tcagcttcctcctgctcttc 70 |||||||||||||||||||| Sbjct: 1618 tcagcttcctcctgctcttc 1637
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 gtgccgcatcaccgtcgacg 548 |||||||||||||||||||| Sbjct: 6795272 gtgccgcatcaccgtcgacg 6795253
>ref|XM_543804.2| PREDICTED: Canis familiaris similar to germ cell associated 1 isoform 2 (LOC486677), mRNA Length = 1105 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ttcgtcagcttcctcctgct 66 |||||||||||||||||||| Sbjct: 545 ttcgtcagcttcctcctgct 564
>ref|XM_760833.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0399) partial mRNA Length = 1044 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 tcgtcagcttcctcctgctcttca 71 |||||||||||||||| ||||||| Sbjct: 924 tcgtcagcttcctcctcctcttca 901
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 catcaccgtcgacgccaaga 554 |||||||||||||||||||| Sbjct: 833367 catcaccgtcgacgccaaga 833386
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01, complete sequence Length = 140454 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tctcctcgggccccgtccgc 283 |||||||||||||||||||| Sbjct: 56904 tctcctcgggccccgtccgc 56885
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatc 79 |||||||||||||||||||| Sbjct: 117897 tcctgctcttcaccgtcatc 117916
>emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in linkage group 15, complete sequence Length = 155540 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 tcagcttcctcctgctcttc 70 |||||||||||||||||||| Sbjct: 76946 tcagcttcctcctgctcttc 76927
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03, complete sequence Length = 82352 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 gtgccgcatcaccgtcgacg 548 |||||||||||||||||||| Sbjct: 29473 gtgccgcatcaccgtcgacg 29492
>gb|AF380347.1|AF380347 Mus musculus heme-regulated eIF2alpha kinase gene, promoter and exon 1 Length = 2152 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ggggcgggctctcgctgtcc 424 |||||||||||||||||||| Sbjct: 2011 ggggcgggctctcgctgtcc 1992
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tctcctcgggccccgtccgc 283 |||||||||||||||||||| Sbjct: 26520017 tctcctcgggccccgtccgc 26519998 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatc 79 |||||||||||||||||||| Sbjct: 25391339 tcctgctcttcaccgtcatc 25391358
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 gtgccgcatcaccgtcgacg 548 |||||||||||||||||||| Sbjct: 6794485 gtgccgcatcaccgtcgacg 6794466
>ref|NM_201345.1| Danio rerio platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit a (pafah1b1a), mRNA Length = 1786 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 tcagcttcctcctgctcttc 70 |||||||||||||||||||| Sbjct: 1618 tcagcttcctcctgctcttc 1637
>dbj|AK120762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007G09, full insert sequence Length = 1627 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 tcctgctcttcaccgtcatc 79 |||||||||||||||||||| Sbjct: 822 tcctgctcttcaccgtcatc 841
>dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full insert sequence Length = 2527 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 tctcctcgggccccgtccgc 283 |||||||||||||||||||| Sbjct: 336 tctcctcgggccccgtccgc 355
>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete sequence Length = 40167 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tctcctcgggccccgtccgc 283 |||||||||||||||||||| Sbjct: 18836 tctcctcgggccccgtccgc 18817
>emb|AJ242523.1|CRE242523 Chlamydomonas reinhardtii partial dhc10 gene for 1 beta dynein heavy chain, exons 1-14, and joined CDS Length = 6438 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 accggctggtgtcggcggtg 370 |||||||||||||||||||| Sbjct: 6209 accggctggtgtcggcggtg 6228
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 cgacggcgcgacggtgcccc 449 |||||||||||||||||||| Sbjct: 1662517 cgacggcgcgacggtgcccc 1662536
>emb|BX284666.7| Zebrafish DNA sequence from clone CH211-190K17 in linkage group 22, complete sequence Length = 139272 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cggggttccgaccaagatgg 200 |||||||||||||||||||| Sbjct: 108182 cggggttccgaccaagatgg 108163
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 tctcctcgggccccgtccgc 283 |||||||||||||||||||| Sbjct: 160657 tctcctcgggccccgtccgc 160638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,059,673 Number of Sequences: 3902068 Number of extensions: 3059673 Number of successful extensions: 65437 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64583 Number of HSP's gapped (non-prelim): 846 length of query: 595 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 572 effective length of database: 17,143,297,704 effective search space: 9805966286688 effective search space used: 9805966286688 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)