>NIA_BEABA (P43100) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 894

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = -3

Query: 349 APARLVVLADLSNPDGDLGIEQADGARGDMDPEHGSRVVHDHVEGAVEGDHLGRNPAVVC 170
           APAR  +L  LS PD         G RG MD E+    + +H+ G  + D  GR   +VC
Sbjct: 820 APARTTLLHKLSRPDASW-----CGLRGRMDKEY----LEEHIGGFRKSD--GREMVLVC 868

Query: 169 ALSGVE 152
             + +E
Sbjct: 869 GPAALE 874

>TIM54_NEUCR (Q9C0Q7) Mitochondrial import inner membrane translocase subunit|
           tim-54
          Length = 425

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
 Frame = +1

Query: 175 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRP-PALFRDRHRGWTGPQVLPAEQEP 351
           P R   +D   ++  Q   ++    VR   ++G        R  H GW GP V PAE  P
Sbjct: 136 PNREPTKDELIEIYRQQRGIKDYEGVRGDVVIGRHTWKEYLRGLHEGWLGPLVAPAEPAP 195

Query: 352 ------PAGVGGDTRRE 384
                 PA   G T  E
Sbjct: 196 LPPTPAPAAAEGSTSTE 212

>UL06_EBV (P03213) Virion protein BBRF1|
          Length = 613

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 304 GDLGIEQADGARGDMDPEHG-SRVVHDHVEGA 212
           GD GI QA  ARGD +P+H  S+   D   GA
Sbjct: 580 GDHGIRQAPSARGDTEPDHAKSKPARDPPPGA 611

>FANCC_MOUSE (P50652) Fanconi anemia group C protein homolog (Protein FACC)|
          Length = 591

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
 Frame = +1

Query: 202 HPQLLPQHDRVQPCFHVR-------DPCLLG-PRPP--ALFRDRH-RGWTGPQV----LP 336
           HP+ +PQ  R+QP  H+        + C  G PR P  + F   H  GW    V    L 
Sbjct: 356 HPEAIPQGHRLQPLLHISQLLREAVEDCTRGSPRNPFESWFLFVHFGGWVDLAVAELLLR 415

Query: 337 AEQEPPAGV 363
            E EPPAG+
Sbjct: 416 EEAEPPAGL 424

>YAA1_SCHPO (Q09795) Probable peptidase C22G7.01c (EC 3.4.-.-)|
          Length = 598

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +2

Query: 86  IVWGAARPYEPDVVVKSIAMDNFYAGEGTD 175
           IVWGA+RP EP  + K I  +  YAG G D
Sbjct: 148 IVWGASRPKEP--LEKLIVQEIKYAGLGVD 175

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +1

Query: 175 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRPPALFRDRHRGWTGPQVLPAEQEPP 354
           PQ    Q G P  LP+ +R +      +P L+G + P   R  H G  GP   P    PP
Sbjct: 161 PQGPKGQKGEPYALPKEERDRYRGEPGEPGLVGFQGPP-GRPGHVGQMGPVGAPGRPGPP 219

Query: 355 AGVG 366
              G
Sbjct: 220 GPPG 223

>NOSD_PSEST (P19843) Copper-binding periplasmic protein precursor|
          Length = 436

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 307 DGDLGIEQADGARG-DMDPEHGSRVVHDHVEGAVEGDHL 194
           DGD G+   D   G  +    G+RV+H+HV  A +G ++
Sbjct: 148 DGDAGVRSQDRGNGIHLFAVSGARVLHNHVRNARDGIYI 186

>ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 852

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +2

Query: 113 EPDVVVKSIAMDNFYAGEGTDHSGVPTKMVTLNCSLNMIVYNPASMFGIHVSSGPVRLLY 292
           E +VV++S   DNF        +   T +V LN S+ +    P +     ++SGP ++LY
Sbjct: 268 EEEVVIRS---DNFT-------NNAKTILVQLNVSVEINCTRPNNNRRRRITSGPGKVLY 317

Query: 293 SEIAIGVGQVRKYY 334
           +   I +G +RK Y
Sbjct: 318 TTGEI-IGDIRKAY 330

>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/71 (28%), Positives = 26/71 (36%)
 Frame = +1

Query: 175 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRPPALFRDRHRGWTGPQVLPAEQEPP 354
           P  G   +  P  LP H    P ++   P      PP   +  H G  GP   P  + PP
Sbjct: 180 PPPGRRANAPPTPLPMHSSKAPAYNREKPL-----PPTPGQRLHPGREGPPAPPPVKPPP 234

Query: 355 AGVGGDTRREG 387
           + V   T   G
Sbjct: 235 SPVNIRTGPSG 245

>XERC_BRAJA (Q89X68) Tyrosine recombinase xerC|
          Length = 321

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = -1

Query: 315 PTPMA----ISE*SRRTGPE-ETWIPNMEAGLYTIMLREQLRVTILVGTPLWSVPSPA*K 151
           P PMA    +++   R G E ETWI   +A +  ++    LR++  +G     VP P   
Sbjct: 132 PLPMASAKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKPG-- 189

Query: 150 LSMAMLLTTTSGS*GRAAP 94
               +L+ T  G+  R  P
Sbjct: 190 -EGDVLVVTGKGNKTRMVP 207

>TRPA1_DROME (Q7Z020) Transient receptor potential cation channel subfamily A|
           member 1 (Ankyrin-like with transmembrane domains
           protein 1) (dANKTM1)
          Length = 1197

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
 Frame = -3

Query: 319 LSNPDGDLGIEQADGARGDMDPEH-GSRVVHDHV------EGAV-EGDHLGRNPAVVCAL 164
           L +  G   I ++DGA   M P H  S+  H  V       GA+   DH GRNP  + A+
Sbjct: 497 LDSEKGSFIINESDGA--GMTPLHISSQQGHTRVVQLLLNRGALLHRDHTGRNPLQLAAM 554

Query: 163 SG----VEVIH 143
           SG    +E++H
Sbjct: 555 SGYTETIELLH 565

>PROB_PROAC (Q6A9H7) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 391

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = -3

Query: 382 LAVYHRRHQPVAPARLVVLADLSNPDGDLGIEQADGARGDMDPEHGSRVVHDHVEGAVEG 203
           +  Y R      P RL+ LAD + P G + I+  DGA   +   H S +        V G
Sbjct: 253 VGTYFRPLATRRPRRLLWLADAATPQGQIVID--DGAVEALTQRHSSLLAVGVTR--VHG 308

Query: 202 DHLGRNPAVVCALSGVEVIHG 140
           D    +P  + A  G  V  G
Sbjct: 309 DFQAGDPVTILASDGRVVGRG 329

>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)|
          Length = 1412

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 135 LLTTTSGS*GRAAPQTMRQMTVKSRRKLTKPSA----TLQRPERPLSPP 1
           LLTTTSG+      +T+      SRR    PSA      Q+P+R  SPP
Sbjct: 143 LLTTTSGTPQIIITRTLPSNQHLSRRHSASPSALHHYQQQQPQRQQSPP 191

>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
 Frame = +1

Query: 175 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRPPALFRDRHRGW---TGPQVLPAEQ 345
           P +G    G PQL P      P      P   GP PPA  + R       TGPQ  P + 
Sbjct: 132 PPQGPPPPGGPQLRPPQGPPPPAGPQPRPPQ-GPPPPAGPQPRPPQGPPTTGPQPRPTQG 190

Query: 346 EPPAG 360
            PP G
Sbjct: 191 PPPTG 195

>FBPB_ACTPL (Q44123) Ferric transport system permease protein fbpB|
          Length = 687

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 26  RCKVALGFVSFLLLFTVICLIVWGAARPYEPDVVVKSI 139
           + KV LG +SF+LLF  I   ++  +  Y   V++ ++
Sbjct: 80  QAKVELGLISFILLFAFISATIYKVSMGYSVIVLIATL 117

>GLMU_PROAC (Q6AAD3) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 418

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
 Frame = -3

Query: 283 ADGARGDMDPEHGSRVV---HDHVEG-----------AVEGDHLGRNPAVVCALSGVEVI 146
           A GA   ++PEH   VV    + VE            AV+ +  G   AV C L G++ +
Sbjct: 35  AIGAARGLNPEHLVVVVGHRREQVEAHLAEDAPDVTTAVQAEQKGTGHAVACGLEGLDEL 94

Query: 145 HG 140
           HG
Sbjct: 95  HG 96

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = +3

Query: 270 RAPSACSIPRSPSGLDRSASTTSRAGATGW 359
           R P A S  RSPSG  RSA   SR G  GW
Sbjct: 94  RRPPASSRNRSPSGSLRSA-RGSRGGTRGW 122

>ODO2_BARQU (Q6FYD4) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
           (E2) (Dihydrolipoamide succinyltransferase component of
           2-oxoglutarate dehydrogenase complex)
          Length = 410

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 273 APSACSIPRSPSGLDRSASTTSRAGAT 353
           +PSA SIP +PS L++S S+++    T
Sbjct: 88  SPSATSIPEAPSELEQSPSSSATPSGT 114

>GRPA_RAT (P08568) Submandibular gland secretory Glx-rich protein CA|
           precursor (GRP-CA)
          Length = 246

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +1

Query: 238 PCFHVRDPCLLGPRPPALFRDRHRGWTGPQVLPAEQEPPAGVGGDTRRE 384
           P    + P   G  PP+   D      G    PA +EPPA  G +  ++
Sbjct: 32  PADSEQQPVDSGSDPPSADADAENVQEGESAAPANEEPPATSGSEEEQQ 80

>NHAB_ECOLI (P0AFA7) Na(+)/H(+) antiporter 2 (Sodium/proton antiporter 2)|
          Length = 513

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 249 MEAGLYTIMLREQLRVTILVGTPLWSVPSPA*KLSMAMLLTT 124
           ME+G  T+   E L V I  GT L SV +P  + +   LLT+
Sbjct: 420 MESGAITLKQYELLAVAINTGTNLPSVATPNGQAAFLFLLTS 461

>NHAB_ECO57 (P0AFA8) Na(+)/H(+) antiporter 2 (Sodium/proton antiporter 2)|
          Length = 513

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -1

Query: 249 MEAGLYTIMLREQLRVTILVGTPLWSVPSPA*KLSMAMLLTT 124
           ME+G  T+   E L V I  GT L SV +P  + +   LLT+
Sbjct: 420 MESGAITLKQYELLAVAINTGTNLPSVATPNGQAAFLFLLTS 461

>UXAC_XANAC (Q8PET9) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)|
           (Uronic isomerase)
          Length = 472

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 298 LGIEQADGARGDMDPEHGSRVVHDH 224
           LGI +ADG R  +DP    RV  +H
Sbjct: 82  LGIPRADGTRATVDPRAAWRVFAEH 106

>YA27_SCHPO (Q09698) Hypothetical protein C2F7.07c in chromosome I|
          Length = 607

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 325 ADLSNPDGDLGIEQAD-GARGDMDPEHGSRVVHDHVEGAVEGDH 197
           A   N +G   ++ +D G++ D+D     +  H + EGA +GDH
Sbjct: 57  AQNGNSNGRASVDNSDDGSKDDLDYSPSVKRKHVNGEGAEKGDH 100

>GAL10_PACTA (P40801) GAL10 bifunctional protein [Includes: UDP-glucose|
           4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose
           1-epimerase (EC 5.1.3.3) (Mutarotase)]
          Length = 689

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 FYAGEGTDHSGVPTKMVTLNCSLNMIVYNP 241
           FY G+G D +GV TK        +  +YNP
Sbjct: 637 FYTGDGVDVAGVFTKRSGFCLEASRYIYNP 666

>THD1_ARATH (Q9ZSS6) Threonine dehydratase biosynthetic, chloroplast precursor|
           (EC 4.3.1.19) (Threonine deaminase) (TD)
          Length = 592

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 298 LGIEQADGARGDMDPEHGSRVVHDHVEGAVEG 203
           +G+E AD     +   HG RV+ D V G  +G
Sbjct: 290 IGVEPADANAMALSLHHGERVILDQVGGFADG 321

>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +1

Query: 175 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRPPALFRDRHRGW---TGPQVLPAEQ 345
           P  G  Q  +PQ  P     QP    R P   GP PP     R       TGPQ  P + 
Sbjct: 172 PPTGGPQQRYPQSPPPPGGPQP----RPP--QGPPPPGGPHPRPTQGPPPTGPQPRPTQG 225

Query: 346 EPPAG 360
            PP G
Sbjct: 226 PPPTG 230

>DAPD_BORPE (P0A4U8) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate|
           N-succinyltransferase (EC 2.3.1.117)
           (Tetrahydrodipicolinate N-succinyltransferase) (THP
           succinyltransferase) (Tetrahydropicolinate succinylase)
          Length = 273

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 292 IEQADGARGDMDPEHGSRVVHDHVEGAVEGDHLGR 188
           IEQA   R ++ P   S  V D VE  ++G  LGR
Sbjct: 9   IEQAWENRANLSPVDASAEVRDAVEHTIDGLDLGR 43

>DAPD_BORPA (Q7W8Y2) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate|
           N-succinyltransferase (EC 2.3.1.117)
           (Tetrahydrodipicolinate N-succinyltransferase) (THP
           succinyltransferase) (Tetrahydropicolinate succinylase)
          Length = 273

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 292 IEQADGARGDMDPEHGSRVVHDHVEGAVEGDHLGR 188
           IEQA   R ++ P   S  V D VE  ++G  LGR
Sbjct: 9   IEQAWENRANLSPVDASAEVRDAVEHTIDGLDLGR 43

>DAPD_BORBR (P0A4U9) 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate|
           N-succinyltransferase (EC 2.3.1.117)
           (Tetrahydrodipicolinate N-succinyltransferase) (THP
           succinyltransferase) (Tetrahydropicolinate succinylase)
          Length = 273

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 292 IEQADGARGDMDPEHGSRVVHDHVEGAVEGDHLGR 188
           IEQA   R ++ P   S  V D VE  ++G  LGR
Sbjct: 9   IEQAWENRANLSPVDASAEVRDAVEHTIDGLDLGR 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,179,572
Number of Sequences: 219361
Number of extensions: 1084461
Number of successful extensions: 4094
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4089
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)