ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550351.1| Oryza sativa (japonica cultivar-group), mRNA 291 9e-76
2dbj|AK106071.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 9e-76
3dbj|AK073824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 9e-76
4dbj|AK060328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 9e-76
5dbj|AK058295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 291 9e-76
6gb|AY108252.1| Zea mays PCO090236 mRNA sequence 172 5e-40
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
8dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 155 1e-34
9gb|AY105213.1| Zea mays PCO065280 mRNA sequence 129 7e-27
10ref|NM_188588.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
11ref|XM_466774.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
14dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
15dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
16dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
17dbj|AK119627.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
18dbj|AK070657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
19gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.3
20dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
21ref|XM_473275.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
22ref|XM_473121.1| Oryza sativa (japonica cultivar-group), predic... 40 5.2
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.2
24ref|XM_588913.2| PREDICTED: Bos taurus similar to Glycerol-3-pho... 40 5.2
25gb|BC053205.1| Danio rerio platelet-activating factor acetylhydr... 40 5.2
26ref|XM_543804.2| PREDICTED: Canis familiaris similar to germ cel... 40 5.2
27ref|XM_760833.1| Theileria parva strain Muguga chromosome 1 hypo... 40 5.2
28emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4,... 40 5.2
29emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 40 5.2
30emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in l... 40 5.2
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
32ref|NM_201345.1| Danio rerio platelet-activating factor acetylhy... 40 5.2
33dbj|AK120762.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
34dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
35emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 5.2
36emb|AJ242523.1|CRE242523 Chlamydomonas reinhardtii partial dhc10... 40 5.2
37emb|BX284666.7| Zebrafish DNA sequence from clone CH211-190K17 i... 40 5.2
38emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4,... 40 5.2 
>ref|XM_550351.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score =  291 bits (147), Expect = 9e-76
 Identities = 327/387 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
           |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 494 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 553

                                                                       
Query: 64  gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
            |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 554 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 613

                                                                       
Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183
           ||||||||||||| |  | |||||| | |||||||| || ||||||||||||||||| ||
Sbjct: 614 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 673

                                                                       
Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243
           |||||| |||||  |||| || || |||||||| ||  ||||    || |||||||||||
Sbjct: 674 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 733

                                                                       
Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303
           ||| ||||| || ||||||||| |  |||| ||  | ||||| |||||||| |||||| |
Sbjct: 734 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 793

                                                                       
Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363
            ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| |
Sbjct: 794 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 853

                                      
Query: 364 ggcggtgatacacggcgagaaggtgcc 390
           ||||||| | |||||| | ||||||||
Sbjct: 854 ggcggtggtccacggcaacaaggtgcc 880
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>dbj|AK106071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H07, full
           insert sequence
          Length = 1307

 Score =  291 bits (147), Expect = 9e-76
 Identities = 327/387 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
           |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 492 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 551

                                                                       
Query: 64  gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
            |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 552 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 611

                                                                       
Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183
           ||||||||||||| |  | |||||| | |||||||| || ||||||||||||||||| ||
Sbjct: 612 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 671

                                                                       
Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243
           |||||| |||||  |||| || || |||||||| ||  ||||    || |||||||||||
Sbjct: 672 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 731

                                                                       
Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303
           ||| ||||| || ||||||||| |  |||| ||  | ||||| |||||||| |||||| |
Sbjct: 732 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 791

                                                                       
Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363
            ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| |
Sbjct: 792 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 851

                                      
Query: 364 ggcggtgatacacggcgagaaggtgcc 390
           ||||||| | |||||| | ||||||||
Sbjct: 852 ggcggtggtccacggcaacaaggtgcc 878
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>dbj|AK073824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070N04, full
           insert sequence
          Length = 1427

 Score =  291 bits (147), Expect = 9e-76
 Identities = 327/387 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
           |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 491 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 550

                                                                       
Query: 64  gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
            |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 551 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 610

                                                                       
Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183
           ||||||||||||| |  | |||||| | |||||||| || ||||||||||||||||| ||
Sbjct: 611 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 670

                                                                       
Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243
           |||||| |||||  |||| || || |||||||| ||  ||||    || |||||||||||
Sbjct: 671 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 730

                                                                       
Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303
           ||| ||||| || ||||||||| |  |||| ||  | ||||| |||||||| |||||| |
Sbjct: 731 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 790

                                                                       
Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363
            ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| |
Sbjct: 791 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 850

                                      
Query: 364 ggcggtgatacacggcgagaaggtgcc 390
           ||||||| | |||||| | ||||||||
Sbjct: 851 ggcggtggtccacggcaacaaggtgcc 877
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>dbj|AK060328.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A10, full
           insert sequence
          Length = 1266

 Score =  291 bits (147), Expect = 9e-76
 Identities = 327/387 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
           |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 494 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 553

                                                                       
Query: 64  gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
            |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 554 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 613

                                                                       
Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183
           ||||||||||||| |  | |||||| | |||||||| || ||||||||||||||||| ||
Sbjct: 614 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 673

                                                                       
Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243
           |||||| |||||  |||| || || |||||||| ||  ||||    || |||||||||||
Sbjct: 674 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 733

                                                                       
Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303
           ||| ||||| || ||||||||| |  |||| ||  | ||||| |||||||| |||||| |
Sbjct: 734 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 793

                                                                       
Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363
            ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| |
Sbjct: 794 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 853

                                      
Query: 364 ggcggtgatacacggcgagaaggtgcc 390
           ||||||| | |||||| | ||||||||
Sbjct: 854 ggcggtggtccacggcaacaaggtgcc 880
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>dbj|AK058295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F03, full
           insert sequence
          Length = 1463

 Score =  291 bits (147), Expect = 9e-76
 Identities = 327/387 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
           |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 481 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 540

                                                                       
Query: 64  gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
            |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 541 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 600

                                                                       
Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183
           ||||||||||||| |  | |||||| | |||||||| || ||||||||||||||||| ||
Sbjct: 601 cgtcgtcaagagcttgacgatggatgatttctacgctggtgagggcacagaccacagtgg 660

                                                                       
Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243
           |||||| |||||  |||| || || |||||||| ||  ||||    || |||||||||||
Sbjct: 661 ggttccaaccaaattggttacactgaactgctctctgcacatagctgtatacaaccctgc 720

                                                                       
Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303
           ||| ||||| || ||||||||| |  |||| ||  | ||||| |||||||| |||||| |
Sbjct: 721 ttcaatgtttggaatccatgtcacgacgggtcctattcgccttctctattcagagatctc 780

                                                                       
Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363
            ||||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||| |
Sbjct: 781 tatcggggttggacaggttcgcaggtactaccagccgaggaagagccaccggttggtgac 840

                                      
Query: 364 ggcggtgatacacggcgagaaggtgcc 390
           ||||||| | |||||| | ||||||||
Sbjct: 841 ggcggtggtccacggcaacaaggtgcc 867
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>gb|AY108252.1| Zea mays PCO090236 mRNA sequence
          Length = 1456

 Score =  172 bits (87), Expect = 5e-40
 Identities = 312/387 (80%)
 Strand = Plus / Plus

                                                                       
Query: 4   cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
           |||||| |||||||||||| |||||||| || ||   ||||||||| ||| |||| ||||
Sbjct: 536 cggcgatagcggcctctcccgccgctgccagatcatactcggcttcctcaccttcgtcct 595

                                                                       
Query: 64  gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
            |||||||||||| ||||||||||| |||||||||||||||| || ||||||||||| ||
Sbjct: 596 cctcttcaccgtcttctgcctcatcatctggggcgccgcccggccgtacgagcccgaggt 655

                                                                       
Query: 124 cgtcgtcaagagcatagccatggataacttctacgccggagagggcacagaccacagcgg 183
           | ||||||||||| | |  |||||  |||||||||| || || ||||| |||||||||||
Sbjct: 656 catcgtcaagagcttggtgatggacgacttctacgcgggtgaaggcacggaccacagcgg 715

                                                                       
Query: 184 ggttccgaccaagatggtcaccctcaactgctccctcaacatgatcgtgtacaaccctgc 243
            ||||| || ||  |||||||    |||||||| ||  ||||    || |||||||||||
Sbjct: 716 cgttccaacaaaattggtcacaacaaactgctctctgcacatagctgtctacaaccctgc 775

                                                                       
Query: 244 ttccatgttcgggatccatgtctcctcgggccccgtccgcctgctctattccgagatcgc 303
             | ||||| || || |||||| | || |||||| ||| |||| | ||||| |||||| |
Sbjct: 776 cacaatgtttggaattcatgtcacttctggccccatccacctgatgtattcagagatccc 835

                                                                       
Query: 304 catcggggttggacaggtccgcaagtactaccagccgagcaggagccaccggctggtgtc 363
            || |  || || ||||| || | ||| ||||||||||| | |||||||||| ||||| |
Sbjct: 836 aatagcagtcggtcaggttcggaggtattaccagccgaggaagagccaccggatggtgac 895

                                      
Query: 364 ggcggtgatacacggcgagaaggtgcc 390
           |||||| || |||||||||||||||||
Sbjct: 896 ggcggtcatccacggcgagaaggtgcc 922
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  155 bits (78), Expect = 1e-34
 Identities = 117/130 (90%)
 Strand = Plus / Plus

                                                                           
Query: 4       cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
               |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 3195287 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 3195346

                                                                           
Query: 64      gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
                |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 3195347 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 3195406

                         
Query: 124     cgtcgtcaag 133
               ||||||||||
Sbjct: 3195407 cgtcgtcaag 3195416



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 146/179 (81%)
 Strand = Plus / Plus

                                                                           
Query: 143     atggataacttctacgccggagagggcacagaccacagcggggttccgaccaagatggtc 202
               |||||| | |||||||| || ||||||||||||||||| |||||||| |||||  |||| 
Sbjct: 3196291 atggatgatttctacgctggtgagggcacagaccacagtggggttccaaccaaattggtt 3196350

                                                                           
Query: 203     accctcaactgctccctcaacatgatcgtgtacaaccctgcttccatgttcgggatccat 262
               || || |||||||| ||  ||||    || |||||||||||||| ||||| || ||||||
Sbjct: 3196351 acactgaactgctctctgcacatagctgtatacaaccctgcttcaatgtttggaatccat 3196410

                                                                          
Query: 263     gtctcctcgggccccgtccgcctgctctattccgagatcgccatcggggttggacaggt 321
               ||| |  |||| ||  | ||||| |||||||| |||||| | |||||||||||||||||
Sbjct: 3196411 gtcacgacgggtcctattcgccttctctattcagagatctctatcggggttggacaggt 3196469



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                           
Query: 317     caggtccgcaagtactaccagccgagcaggagccaccggctggtgtcggcggtgatacac 376
               ||||| |||| ||||||||||||||| | |||||||||| ||||| |||||||| | |||
Sbjct: 3197269 caggttcgcaggtactaccagccgaggaagagccaccggttggtgacggcggtggtccac 3197328

                             
Query: 377     ggcgagaaggtgcc 390
               ||| | ||||||||
Sbjct: 3197329 ggcaacaaggtgcc 3197342
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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0681F10
          Length = 170371

 Score =  155 bits (78), Expect = 1e-34
 Identities = 117/130 (90%)
 Strand = Plus / Plus

                                                                          
Query: 4      cggcgacagcggcctctccggccgctgcaaggtcgcgctcggcttcgtcagcttcctcct 63
              |||||||| |||||||||| |||||||| || |||  ||||||||| || ||||| ||||
Sbjct: 149472 cggcgacaccggcctctcccgccgctgccagatcgtcctcggcttcctctgcttcgtcct 149531

                                                                          
Query: 64     gctcttcaccgtcatctgcctcatcgtctggggcgccgcccgcccctacgagcccgacgt 123
               |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 149532 cctcttcaccgtcttctgcctcatcatctggggcgccgctcgcccctacgagcccgacgt 149591

                        
Query: 124    cgtcgtcaag 133
              ||||||||||
Sbjct: 149592 cgtcgtcaag 149601



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 146/179 (81%)
 Strand = Plus / Plus

                                                                          
Query: 143    atggataacttctacgccggagagggcacagaccacagcggggttccgaccaagatggtc 202
              |||||| | |||||||| || ||||||||||||||||| |||||||| |||||  |||| 
Sbjct: 150476 atggatgatttctacgctggtgagggcacagaccacagtggggttccaaccaaattggtt 150535

                                                                          
Query: 203    accctcaactgctccctcaacatgatcgtgtacaaccctgcttccatgttcgggatccat 262
              || || |||||||| ||  ||||    || |||||||||||||| ||||| || ||||||
Sbjct: 150536 acactgaactgctctctgcacatagctgtatacaaccctgcttcaatgtttggaatccat 150595

                                                                         
Query: 263    gtctcctcgggccccgtccgcctgctctattccgagatcgccatcggggttggacaggt 321
              ||| |  |||| ||  | ||||| |||||||| |||||| | |||||||||||||||||
Sbjct: 150596 gtcacgacgggtcctattcgccttctctattcagagatctctatcggggttggacaggt 150654



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 317    caggtccgcaagtactaccagccgagcaggagccaccggctggtgtcggcggtgatacac 376
              ||||| |||| ||||||||||||||| | |||||||||| ||||| |||||||| | |||
Sbjct: 151454 caggttcgcaggtactaccagccgaggaagagccaccggttggtgacggcggtggtccac 151513

                            
Query: 377    ggcgagaaggtgcc 390
              ||| | ||||||||
Sbjct: 151514 ggcaacaaggtgcc 151527
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>gb|AY105213.1| Zea mays PCO065280 mRNA sequence
          Length = 731

 Score =  129 bits (65), Expect = 7e-27
 Identities = 137/161 (85%)
 Strand = Plus / Plus

                                                                       
Query: 230 gtgtacaaccctgcttccatgttcgggatccatgtctcctcgggccccgtccgcctgctc 289
           ||||||||||||||  | ||||| |||||||||||| |||| |||||| |||| ||| ||
Sbjct: 27  gtgtacaaccctgccacaatgtttgggatccatgtcacctccggccccatccgtctgatc 86

                                                                       
Query: 290 tattccgagatcgccatcggggttggacaggtccgcaagtactaccagccgagcaggagc 349
           ||||| |||||| | || |  || || |||||||||| ||||||||||||||| | ||||
Sbjct: 87  tattcagagatctcaatagcagtcggccaggtccgcaggtactaccagccgaggaagagc 146

                                                    
Query: 350 caccggctggtgtcggcggtgatacacggcgagaaggtgcc 390
           ||||||  |||| |||||||||| |||||||||||||||||
Sbjct: 147 caccggacggtgacggcggtgatccacggcgagaaggtgcc 187
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>ref|NM_188588.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 966

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 67  cttcaccgtcatctgcctcatcgtctgggg 96
           ||||||| || |||||||||||||||||||
Sbjct: 435 cttcaccctcgtctgcctcatcgtctgggg 464
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>ref|XM_466774.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1686

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 60  tcctgctcttcaccgtcatctgcctcatcg 89
           ||||||||||||||||||||  ||||||||
Sbjct: 898 tcctgctcttcaccgtcatcatcctcatcg 927
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 60       tcctgctcttcaccgtcatctgcctcatcg 89
                ||||||||||||||||||||  ||||||||
Sbjct: 24615464 tcctgctcttcaccgtcatcatcctcatcg 24615493
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 67      cttcaccgtcatctgcctcatcgtctgggg 96
               ||||||| || |||||||||||||||||||
Sbjct: 7095851 cttcaccctcgtctgcctcatcgtctgggg 7095822



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 54       gcttcctcctgctcttcaccgtcatctgcctcatcgtctggggcg 98
                ||||| |||| || |||||| || ||||||||||| |||||||||
Sbjct: 42663945 gcttcgtcctcctgttcaccatcttctgcctcatcatctggggcg 42663901
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>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 67    cttcaccgtcatctgcctcatcgtctgggg 96
             ||||||| || |||||||||||||||||||
Sbjct: 83431 cttcaccctcgtctgcctcatcgtctgggg 83402
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>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1014_H03
          Length = 132696

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 60     tcctgctcttcaccgtcatctgcctcatcg 89
              ||||||||||||||||||||  ||||||||
Sbjct: 129565 tcctgctcttcaccgtcatcatcctcatcg 129594
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>dbj|AP004083.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1212_C01
          Length = 124548

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 60    tcctgctcttcaccgtcatctgcctcatcg 89
             ||||||||||||||||||||  ||||||||
Sbjct: 60013 tcctgctcttcaccgtcatcatcctcatcg 60042
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>dbj|AK119627.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E07, full
           insert sequence
          Length = 1159

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 67  cttcaccgtcatctgcctcatcgtctgggg 96
           ||||||| || |||||||||||||||||||
Sbjct: 539 cttcaccctcgtctgcctcatcgtctgggg 568
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>dbj|AK070657.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056H15, full
           insert sequence
          Length = 1686

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 60  tcctgctcttcaccgtcatctgcctcatcg 89
           ||||||||||||||||||||  ||||||||
Sbjct: 898 tcctgctcttcaccgtcatcatcctcatcg 927
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 352     ccggctggtgtcggcggtgat 372
               |||||||||||||||||||||
Sbjct: 2246154 ccggctggtgtcggcggtgat 2246134
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>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0458E05
          Length = 193577

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 54     gcttcctcctgctcttcaccgtcatctgcctcatcgtctggggcg 98
              ||||| |||| || |||||| || ||||||||||| |||||||||
Sbjct: 184828 gcttcgtcctcctgttcaccatcttctgcctcatcatctggggcg 184784
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>ref|XM_473275.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 264 tctcctcgggccccgtccgc 283
           ||||||||||||||||||||
Sbjct: 302 tctcctcgggccccgtccgc 321
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>ref|XM_473121.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tcctgctcttcaccgtcatc 79
           ||||||||||||||||||||
Sbjct: 788 tcctgctcttcaccgtcatc 807
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 279     tccgcctgctctattccgagatcg 302
               ||||| ||||||||||||||||||
Sbjct: 1160097 tccgcgtgctctattccgagatcg 1160120
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>ref|XM_588913.2| PREDICTED: Bos taurus similar to Glycerol-3-phosphate transporter
            (G-3-P transporter) (G-3-P permease) (Solute carrier
            family 37 member 1) (LOC511558), mRNA
          Length = 2495

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   gcttcctcctgctcttcacc 73
            ||||||||||||||||||||
Sbjct: 2108 gcttcctcctgctcttcacc 2127
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>gb|BC053205.1| Danio rerio platelet-activating factor acetylhydrolase, isoform Ib,
            alpha subunit a, mRNA (cDNA clone MGC:64021
            IMAGE:6793127), complete cds
          Length = 1786

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   tcagcttcctcctgctcttc 70
            ||||||||||||||||||||
Sbjct: 1618 tcagcttcctcctgctcttc 1637
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>ref|XM_543804.2| PREDICTED: Canis familiaris similar to germ cell associated 1
           isoform 2 (LOC486677), mRNA
          Length = 1105

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 47  ttcgtcagcttcctcctgct 66
           ||||||||||||||||||||
Sbjct: 545 ttcgtcagcttcctcctgct 564
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>ref|XM_760833.1| Theileria parva strain Muguga chromosome 1 hypothetical protein
           (TP01_0399) partial mRNA
          Length = 1044

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 48  tcgtcagcttcctcctgctcttca 71
           |||||||||||||||| |||||||
Sbjct: 924 tcgtcagcttcctcctcctcttca 901
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>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   tctcctcgggccccgtccgc 283
             ||||||||||||||||||||
Sbjct: 56904 tctcctcgggccccgtccgc 56885
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
              complete sequence
          Length = 164577

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     tcctgctcttcaccgtcatc 79
              ||||||||||||||||||||
Sbjct: 117897 tcctgctcttcaccgtcatc 117916
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>emb|BX324162.8| Zebrafish DNA sequence from clone DKEY-95O3 in linkage group 15,
             complete sequence
          Length = 155540

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    tcagcttcctcctgctcttc 70
             ||||||||||||||||||||
Sbjct: 76946 tcagcttcctcctgctcttc 76927
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 264      tctcctcgggccccgtccgc 283
                ||||||||||||||||||||
Sbjct: 26520017 tctcctcgggccccgtccgc 26519998



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       tcctgctcttcaccgtcatc 79
                ||||||||||||||||||||
Sbjct: 25391339 tcctgctcttcaccgtcatc 25391358
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>ref|NM_201345.1| Danio rerio platelet-activating factor acetylhydrolase, isoform Ib,
            alpha subunit a (pafah1b1a), mRNA
          Length = 1786

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   tcagcttcctcctgctcttc 70
            ||||||||||||||||||||
Sbjct: 1618 tcagcttcctcctgctcttc 1637
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>dbj|AK120762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007G09, full
           insert sequence
          Length = 1627

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  tcctgctcttcaccgtcatc 79
           ||||||||||||||||||||
Sbjct: 822 tcctgctcttcaccgtcatc 841
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>dbj|AK120331.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058N01, full
           insert sequence
          Length = 2527

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 264 tctcctcgggccccgtccgc 283
           ||||||||||||||||||||
Sbjct: 336 tctcctcgggccccgtccgc 355
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>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete
             sequence
          Length = 40167

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   tctcctcgggccccgtccgc 283
             ||||||||||||||||||||
Sbjct: 18836 tctcctcgggccccgtccgc 18817
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>emb|AJ242523.1|CRE242523 Chlamydomonas reinhardtii partial dhc10 gene for 1 beta dynein heavy
            chain, exons 1-14, and joined CDS
          Length = 6438

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 351  accggctggtgtcggcggtg 370
            ||||||||||||||||||||
Sbjct: 6209 accggctggtgtcggcggtg 6228
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>emb|BX284666.7| Zebrafish DNA sequence from clone CH211-190K17 in linkage group 22,
              complete sequence
          Length = 139272

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cggggttccgaccaagatgg 200
              ||||||||||||||||||||
Sbjct: 108182 cggggttccgaccaagatgg 108163
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>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    tctcctcgggccccgtccgc 283
              ||||||||||||||||||||
Sbjct: 160657 tctcctcgggccccgtccgc 160638


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,236,506
Number of Sequences: 3902068
Number of extensions: 2236506
Number of successful extensions: 47589
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47290
Number of HSP's gapped (non-prelim): 291
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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