Clone Information

BLAST Search Result

Clone Name	basd27b02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IF2_XANAC (Q8PJ55) Translation initiation factor IF-2	41	0.002
2	H1E_CHITE (P40278) Histone H1E	37	0.048
3	IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2	37	0.048
4	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	34	0.24
5	LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (E...	33	0.69
6	GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 pr...	32	0.90
7	IWS1_CAEBR (Q61MR2) IWS1-like protein	32	0.90
8	TEGU_EHV1B (P28955) Large tegument protein	32	1.2
9	MAGE1_MACFA (Q9BE18) Melanoma-associated antigen E1 (MAGE-E1 ant...	32	1.2
10	KLEG1_ECOLI (Q52282) Putative protein kleG	32	1.5
11	FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote...	31	2.0
12	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	31	2.0
13	MUTS_BRAJA (Q89VX1) DNA mismatch repair protein mutS	31	2.0
14	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	31	2.6
15	RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1	31	2.6
16	SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	31	2.6
17	CPN_DROME (Q02910) Calphotin	30	3.4
18	SCN5A_RAT (P15389) Sodium channel protein type 5 alpha subunit (...	30	3.4
19	KNIR_DROVI (Q24753) Zygotic gap protein knirps	30	4.5
20	APP1_SCHPO (Q9P7E8) Protein app1	30	4.5
21	PTPR2_MACNE (O02695) Receptor-type tyrosine-protein phosphatase ...	30	5.9
22	RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-...	30	5.9
23	IMA1A_ORYSA (Q71VM4) Importin alpha-1a subunit	30	5.9
24	YCHD_SCHPO (Q9Y7V2) Protein C645.13 in chromosome III	30	5.9
25	IF2_XANOR (Q5GXU9) Translation initiation factor IF-2	30	5.9
26	SYI_AZOSE (Q5P221) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	29	7.7
27	CREA_ASPOR (Q9P889) DNA-binding protein creA (Carbon catabolite ...	29	7.7
28	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	29	7.7
29	DMD_HUMAN (P11532) Dystrophin	25	8.1
30	DMD_CANFA (O97592) Dystrophin	25	8.1
31	DMD_MOUSE (P11531) Dystrophin	25	8.1
32	DMD_PIG (Q5GN48) Dystrophin	25	8.1
33	DMD_CHICK (P11533) Dystrophin	25	8.1
34	SYP1_YEAST (P25623) Suppressor of yeast profilin deletion	29	10.0
35	IF2_STRPN (Q97S57) Translation initiation factor IF-2	29	10.0
36	RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger pro...	29	10.0
37	FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1....	29	10.0
38	FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p...	29	10.0
39	IF2_SYMTH (Q67P86) Translation initiation factor IF-2	29	10.0
40	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	29	10.0
41	IF2_XANCP (Q8P7U7) Translation initiation factor IF-2	29	10.0
42	YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3	29	10.0
43	SYI_GLOVI (Q7NF75) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	29	10.0
44	IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2	29	10.0
45	GAT26_ARATH (Q9LRH6) GATA transcription factor 26 (ZIM protein)	29	10.0

>IF2_XANAC (Q8PJ55) Translation initiation factor IF-2|
          Length = 904

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/48 (50%), Positives = 31/48 (64%)
 Frame = +2

Query: 134 SATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKAS 277
           SA  PVAD+PK  P+  APA+ LPS P  A ++ARP A   P +R A+
Sbjct: 184 SAPAPVADAPK--PSAAAPAARLPSSPSSAPRAARP-AGASPASRPAA 228

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>H1E_CHITE (P40278) Histone H1E|
          Length = 237

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
 Frame = +2

Query: 71  ADKAKG-LMQLAGKGIPVVQNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNA 247
           A  AKG L+Q  GKG      +       D PK  PA   P S+ P       K  +  A
Sbjct: 101 ASVAKGTLLQAKGKGASGSFKLPPAAKKVDKPKKAPATPKPKSTKPKRVTGEKKVVKKPA 160

Query: 248 SDLPIARKASLHRFLEKRKDRLHAKAPYQASPSDATPVKKEFENQPWLGLGP-NAALKP 421
           +  P A+KA+       +K      A   A+P      K + E +P     P  AA KP
Sbjct: 161 AKKPEAKKATKAAKPAAKKVAAKPAAKKAAAPKPKAAAKPKKEVKPKKEAKPKKAAAKP 219

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>IF2_XANC5 (Q3BRP5) Translation initiation factor IF-2|
          Length = 904

 Score = 36.6 bits (83), Expect = 0.048
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = +2

Query: 134 SATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKAS 277
           SA  PVAD+P   P+  APA+  PS P  A ++ARP A   P +R A+
Sbjct: 184 SAPAPVADAPT--PSAAAPAARSPSSPSSAPRAARP-AGASPASRPAA 228

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 1/114 (0%)
 Frame = +2

Query: 95  QLAGKGIPVVQNVSATT-PVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARK 271
           Q A +  PV Q     + PVA  P   PA   PAS  P     A ++ R  +   P   K
Sbjct: 517 QSASQATPVTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGAPQATRQASISGPAPTK 576

Query: 272 ASLHRFLEKRKDRLHAKAPYQASPSDATPVKKEFENQPWLGLGPNAALKPNQ*G 433
           AS              + P Q  P  A P ++  +  P    GP    +P   G
Sbjct: 577 AS-----GAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPTTQQPRPSG 625

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>LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (EC 3.1.3.48)|
           (Protein-tyrosine-phosphate phosphohydrolase) (dLAR)
          Length = 2029

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 24/86 (27%), Positives = 36/86 (41%)
 Frame = +2

Query: 131 VSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDR 310
           V A T V D P+  P +L     +P DP D  K+   N++ + ++ K  L       KDR
Sbjct: 685 VLAGTSVGDGPRSHPIILRTQEDVPGDPQDV-KATPLNSTSIHVSWKPPL------EKDR 737

Query: 311 LHAKAPYQASPSDATPVKKEFENQPW 388
                 Y     +     K F N+P+
Sbjct: 738 NGIIRGYHIHAQELRDEGKGFLNEPF 763

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>GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 protein)|
          Length = 302

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +2

Query: 17  EPLTIFYGGKVIVFNDFPADKAKG-LMQLAGKGIPVVQNVSATTPVADSPKVQPAVLAPA 193
           + LT+ + G+V VF+    +K +  L+ L G+ +P      A  P   SP     V    
Sbjct: 82  DQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELP-----QAAPPGLGSPHQNNRV---- 132

Query: 194 SSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDR 310
           SSLP  P             +P  R ASL RF EKRK R
Sbjct: 133 SSLPGTP---------QRFSIP-QRLASLVRFREKRKGR 161

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>IWS1_CAEBR (Q61MR2) IWS1-like protein|
          Length = 507

 Score = 32.3 bits (72), Expect = 0.90
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 284 RFLEKRKDRLHAKAPYQASPSDATPVKKEFENQPWLGLGPNAALKPNQ*GGMNRSLMPLP 463
           R  EKRK +LH++   +    D  P +    +   LG   +  LKP   G +NR+ +P P
Sbjct: 390 RMPEKRKKKLHSRE--EEPDEDEAPKRPRIRDAEGLGPTKSLDLKPGDKGYINRARVPKP 447

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>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 128  NVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKD 307
            +V+   P+ DSP+      A    LP  P D   S R +A    +   AS+HR  + R +
Sbjct: 2971 SVACKVPLPDSPEDDFYSYAVDVPLPDSPTDDPSSGRSDARAPTVGGVASIHRKSDSRNN 3030

Query: 308  R 310
            R
Sbjct: 3031 R 3031

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>MAGE1_MACFA (Q9BE18) Melanoma-associated antigen E1 (MAGE-E1 antigen)|
          Length = 957

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
 Frame = +2

Query: 113 IPVVQNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSAR-PNASDLPIARKASLHRF 289
           +P       +TPV  +P        P++S+P+ P +   +   P ASD    +  SL   
Sbjct: 224 VPPTATEGLSTPVPPTPDE-----GPSTSMPATPGEGRSTTMLPAASD---GQSISL--- 272

Query: 290 LEKRKDRLHAKAPYQASPSDATPVKKEFEN---QPWLGLGPNAALKPNQ*GGMNRSLMPL 460
                       P + S +   P   E  +   QP  G GP+ ++ P   GG++ S+ P 
Sbjct: 273 ---------VPTPGKGSSTSGPPTATEGLSTSVQPTAGEGPSTSVPPTPCGGLSTSVPPT 323

Query: 461 P 463
           P
Sbjct: 324 P 324

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>KLEG1_ECOLI (Q52282) Putative protein kleG|
          Length = 87

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = -1

Query: 164 WGCLRQVWSQRRSEQQGCPCQPTALGPLPCR------LGNR*TRSPSHHR 33
           W CL +  + RR  + G PC  T  GP   R       G+R  R P  HR
Sbjct: 27  WACLPRRCASRRRWRAGRPCSTTRTGPRFARARWIPTTGDRRGRRPQRHR 76

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>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 113 IPVVQNVSATTPVADSPKVQPAVLAPA---SSLPSDPVDAHKSARPNASDLPIARKA 274
           +PVV + +A  P +  P    A  APA   S +P  P+D  K  R  + D P A  A
Sbjct: 775 VPVVPSPTAELPSSPRPGSASAGPAPALSPSPVPDGPIDLSKRPRRQSPDAPTALPA 831

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 1/128 (0%)
 Frame = +2

Query: 95  QLAGKGIPVVQNVSATT-PVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARK 271
           Q A +  P  Q     + PVA  P   PA   PAS  P       ++ R  +   P   K
Sbjct: 517 QPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPK 576

Query: 272 ASLHRFLEKRKDRLHAKAPYQASPSDATPVKKEFENQPWLGLGPNAALKPNQ*GGMNRSL 451
           AS              + P Q  P  A P ++  +  P    GP    +P    G   + 
Sbjct: 577 AS-----GAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRP-SGPGPAG 630

Query: 452 MPLPELSR 475
            P P+L++
Sbjct: 631 RPKPQLAQ 638

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>MUTS_BRAJA (Q89VX1) DNA mismatch repair protein mutS|
          Length = 912

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 26/81 (32%), Positives = 36/81 (44%)
 Frame = +2

Query: 176 AVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDRLHAKAPYQASPSDAT 355
           A+L  A+SL    VD +       S L  A +A  H  +E+   R     P+ A+  D +
Sbjct: 589 ALLDVATSLAKLAVDENYVRPEVDSSLGFAIEAGRHPVVEQALKR--NGEPFIANACDLS 646

Query: 356 PVKKEFENQPWLGLGPNAALK 418
           P   +   Q WL  GPN A K
Sbjct: 647 PAPAQKSGQLWLLTGPNMAGK 667

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 1/114 (0%)
 Frame = +2

Query: 95  QLAGKGIPVVQNVSATT-PVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARK 271
           Q A +  P+ Q     + PVA  P   PA   PAS  P       ++ R  +   P   K
Sbjct: 515 QSASQATPMTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQASISGPAPPK 574

Query: 272 ASLHRFLEKRKDRLHAKAPYQASPSDATPVKKEFENQPWLGLGPNAALKPNQ*G 433
            S              + P Q  P  A P+++  +  P    GP    +P   G
Sbjct: 575 VS-----GASPGGQQRQGPPQKPPGPAGPIRQASQAGPGPRTGPPTTQQPRPSG 623

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>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1|
          Length = 1906

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 185  APASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDRLHAKAP-YQASPSDATPV 361
            AP  S  SD   A K  +P   + PIA+K  + R    R  R+H   P  + SP  A  +
Sbjct: 961  APGDSTTSDASLAQKPNKPAVPEAPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRAPVL 1020

Query: 362  KKE 370
             K+
Sbjct: 1021 PKD 1023

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>SYI_THIDA (Q3SHS3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 929

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 402 GPSPSHGWFSNSFLTGVASEGEAWYGA 322
           G     GWF +S LTG A++G A Y A
Sbjct: 569 GSDQHRGWFQSSLLTGCATDGRAPYDA 595

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>CPN_DROME (Q02910) Calphotin|
          Length = 864

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 113 IPVVQNVSATTPVADSPKVQPAV---LAPASSLPSDPVDAHKSARPNASDLPIA 265
           +P    V    PVA  P   P V   LAPA +    PV A   A P  +++P+A
Sbjct: 165 VPANTTVPVAAPVAAVPAAVPVVAPVLAPAVAPAVAPVVAETPAPPPVAEIPVA 218



 Score = 28.9 bits (63), Expect = 10.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 116 PVVQNVSATTPVADSPKVQPAVLAPASSLPSDPVDA 223
           PVV   +A+  V+ +P V+ AV+AP S+    PV A
Sbjct: 255 PVVAPAAASPHVSVAPAVETAVVAPVSASTEPPVAA 290

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>SCN5A_RAT (P15389) Sodium channel protein type 5 alpha subunit (Sodium channel|
            protein type V alpha subunit) (Voltage-gated sodium
            channel alpha subunit Nav1.5) (Sodium channel protein,
            cardiac muscle alpha-subunit)
          Length = 2019

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = +2

Query: 170  QPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDRLHAKAPYQASPSD 349
            +PA LA  S LPS          P    +P ARK +  RF E        K P Q +P D
Sbjct: 994  KPAALATHSQLPSCITAPRSPPPPEVEKVPPARKET--RFEED-------KRPGQGTPGD 1044

Query: 350  ATPV 361
            + PV
Sbjct: 1045 SEPV 1048

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>KNIR_DROVI (Q24753) Zygotic gap protein knirps|
          Length = 481

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 332 GMVPLHAD-DPFSSQGIGEVTPF*QLADQKHSDEQTYEHQ 216
           G  P HA   P SS G G++    Q   Q+H  +Q  +HQ
Sbjct: 103 GKAPGHATGSPMSSPGFGDLAAHLQQQQQQHQQQQQQQHQ 142

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>APP1_SCHPO (Q9P7E8) Protein app1|
          Length = 857

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 23/87 (26%), Positives = 38/87 (43%)
 Frame = +2

Query: 125 QNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRK 304
           Q   +T  VA +P   P+   P +++    V A K ++ N+ D      +S     +   
Sbjct: 161 QTFGSTAKVAPAPA--PSTKTPLANISKPVVQAQKDSKDNSWD-----DSSKQSNTQTAN 213

Query: 305 DRLHAKAPYQASPSDATPVKKEFENQP 385
              + + P  AS SDA   +K  EN+P
Sbjct: 214 TTSNLRVPVNASWSDAGRKEKSQENKP 240

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>PTPR2_MACNE (O02695) Receptor-type tyrosine-protein phosphatase N2 precursor|
           (EC 3.1.3.48) (R-PTP-N2) (M1851)
          Length = 1013

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
 Frame = +2

Query: 134 SATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLE---KRK 304
           S ++  +D P   P+  + ASS   +PV          S++ I+    +  ++E   K K
Sbjct: 690 SVSSQFSDGPMPSPSARSSASSWSEEPVQ---------SNMDISTGHMILSYMEDHLKNK 740

Query: 305 DRL----HAKAPYQASPSDATPVKKEFENQP 385
           +RL     A   YQA P+ +   +KE EN P
Sbjct: 741 NRLEKEWEALCAYQAEPNSSLVAQKE-ENVP 770

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>RD23C_ARATH (Q84L31) Putative DNA repair protein RAD23-3 (RAD23-like protein 3)|
           (AtRAD23-3)
          Length = 419

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = +2

Query: 134 SATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDRL 313
           SA  P     + Q    APAS   ++P+D      PN    P    A    FL   +   
Sbjct: 244 SAGQPANPPAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNP---GAGTLDFLRNSQQFQ 300

Query: 314 HAKAPYQASPSDATPVKKEFENQ 382
             +A  QA+P    P+ +E   Q
Sbjct: 301 ALRAMVQANPQVLQPMLQELGKQ 323

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>IMA1A_ORYSA (Q71VM4) Importin alpha-1a subunit|
          Length = 526

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 215 VDAHKSARPNASDLPIARKASLHR-FLEKRKDRLHAKAPYQASPSDATPVKKEFENQP 385
           VDA +  R    ++   RK+      L+KR++ L A+AP  AS   AT V K+ E+ P
Sbjct: 20  VDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASA--ATGVDKKLESLP 75

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>YCHD_SCHPO (Q9Y7V2) Protein C645.13 in chromosome III|
          Length = 721

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 22/99 (22%), Positives = 36/99 (36%)
 Frame = +2

Query: 125 QNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRK 304
           ++V   TP+  S    P+    AS  P++PV ++ S     + L                
Sbjct: 633 ESVERATPITTSTNGIPSTYQSASGTPTNPVHSYPSLESIINAL---------------- 676

Query: 305 DRLHAKAPYQASPSDATPVKKEFENQPWLGLGPNAALKP 421
                      +PSD   +K   EN P +   P+ A+ P
Sbjct: 677 -----------TPSDMLLIKDVVENNPQIRANPSLAINP 704

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>IF2_XANOR (Q5GXU9) Translation initiation factor IF-2|
          Length = 906

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 137 ATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKAS 277
           A  PVA +P   P+  APA+  PS P  A + +RP  +  P +R ++
Sbjct: 187 APAPVAAAPT--PSAAAPAARAPSSPSSAPRPSRPGGAS-PASRPST 230

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>SYI_AZOSE (Q5P221) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 939

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 402 GPSPSHGWFSNSFLTGVASEGEAWYGA 322
           G     GWF +S LTG A +G A Y A
Sbjct: 575 GSDQHRGWFHSSLLTGCAIDGRAPYDA 601

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>CREA_ASPOR (Q9P889) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 429

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 23/74 (31%), Positives = 28/74 (37%)
 Frame = +2

Query: 185 APASSLPSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDRLHAKAPYQASPSDATPVK 364
           +P S+ PS P  +H S  P     P+A  A   R        LH  +    S    TP  
Sbjct: 294 SPNSTAPSSPTFSHDSLSPTPDHTPLATPAHSPRLRPLGSSELHLPSIRHLS-LHHTPAL 352

Query: 365 KEFENQPWLGLGPN 406
              E QP    GPN
Sbjct: 353 APMEPQP---EGPN 363

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 116 PVVQNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARP 241
           P V   +   P A SP   PA  APA++ P  P      ARP
Sbjct: 242 PFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARP 283

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>DMD_HUMAN (P11532) Dystrophin|
          Length = 3685

 Score = 24.6 bits (52), Expect(2) = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 494  KEHFRYFWKALVRA*GFCSCRLIGL 420
            ++ +RY +K +  + GFC  R +GL
Sbjct: 3212 EDKYRYLFKQVASSTGFCDQRRLGL 3236



 Score = 22.7 bits (47), Expect(2) = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394  SKPWLVLKLLLDWCCI*RRSLVW 326
            +KP +   L LDW  +  +S+VW
Sbjct: 3272 NKPEIEAALFLDWMRLEPQSMVW 3294

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>DMD_CANFA (O97592) Dystrophin|
          Length = 3680

 Score = 24.6 bits (52), Expect(2) = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 494  KEHFRYFWKALVRA*GFCSCRLIGL 420
            ++ +RY +K +  + GFC  R +GL
Sbjct: 3207 EDKYRYLFKQVASSTGFCDQRRLGL 3231



 Score = 22.7 bits (47), Expect(2) = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394  SKPWLVLKLLLDWCCI*RRSLVW 326
            +KP +   L LDW  +  +S+VW
Sbjct: 3267 NKPEIEAALFLDWMRLEPQSMVW 3289

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>DMD_MOUSE (P11531) Dystrophin|
          Length = 3678

 Score = 24.6 bits (52), Expect(2) = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 494  KEHFRYFWKALVRA*GFCSCRLIGL 420
            ++ +RY +K +  + GFC  R +GL
Sbjct: 3205 EDKYRYLFKQVASSTGFCDQRRLGL 3229



 Score = 22.7 bits (47), Expect(2) = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394  SKPWLVLKLLLDWCCI*RRSLVW 326
            +KP +   L LDW  +  +S+VW
Sbjct: 3265 NKPEIEAALFLDWMRLEPQSMVW 3287

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>DMD_PIG (Q5GN48) Dystrophin|
          Length = 3674

 Score = 24.6 bits (52), Expect(2) = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 494  KEHFRYFWKALVRA*GFCSCRLIGL 420
            ++ +RY +K +  + GFC  R +GL
Sbjct: 3201 EDKYRYLFKQVASSTGFCDQRRLGL 3225



 Score = 22.7 bits (47), Expect(2) = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394  SKPWLVLKLLLDWCCI*RRSLVW 326
            +KP +   L LDW  +  +S+VW
Sbjct: 3261 NKPEIEAALFLDWMRLEPQSMVW 3283

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>DMD_CHICK (P11533) Dystrophin|
          Length = 3660

 Score = 24.6 bits (52), Expect(2) = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 494  KEHFRYFWKALVRA*GFCSCRLIGL 420
            ++ +RY +K +  + GFC  R +GL
Sbjct: 3209 EDKYRYLFKQVASSTGFCDQRRLGL 3233



 Score = 22.7 bits (47), Expect(2) = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 394  SKPWLVLKLLLDWCCI*RRSLVW 326
            +KP +   L LDW  +  +S+VW
Sbjct: 3269 NKPEIEAALFLDWMRLEPQSMVW 3291

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>SYP1_YEAST (P25623) Suppressor of yeast profilin deletion|
          Length = 870

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = +2

Query: 116 PVVQNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKS----ARP---NASDLPIARKA 274
           P +Q  S T P+     V+PA  +P+ SLP+  VD   S    +RP    A  LP +RK 
Sbjct: 479 PPLQPQSKTKPLP----VEPA--SPSISLPTATVDNQPSGQVDSRPLHIRAPALPPSRK- 531

Query: 275 SLHRFLEKRKDRLHAKAPYQASPSDATPVKKEFENQP 385
               F+  R  +L+   P     S ATP      + P
Sbjct: 532 --QNFIHNRDSQLYDSLPNHG--SGATPTSSSLSSIP 564

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>IF2_STRPN (Q97S57) Translation initiation factor IF-2|
          Length = 958

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
 Frame = +2

Query: 119 VVQNVSATTPVADSPKVQPAVLAPASSL--------PSDPVDAHKSARPNASDLPIARKA 274
           V   ++A+   A +PKV+    AP  S         P+ P  A + A+P A       KA
Sbjct: 42  VAAKIAASFKPAAAPKVEAKPAAPKVSAEKKAEKSEPAKPAVAKEEAKPAAP------KA 95

Query: 275 SLHRFLEKRKDRLHAKAPYQASPSDATPVKKE 370
           S  +  EK +    A A  +A P++    K E
Sbjct: 96  SAEKKAEKSEPVKPAVAKEEAKPAEPVTPKTE 127

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>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)|
          Length = 1114

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 22/121 (18%)
 Frame = +2

Query: 62  DFPADKAKGLMQLAGKGIPVVQNVSATT---------PV------ADSPKVQPAVL--AP 190
           D P  K  GL      G  V Q +S +T         PV      + +P   P +L   P
Sbjct: 484 DLPPRKPSGLPNGIVPGSSVTQLISRSTDSGFESVLKPVKLDHLSSSAPGSPPELLDSVP 543

Query: 191 ASSLPSDPVDAHKSARPNASDLPIARKASL-----HRFLEKRKDRLHAKAPYQASPSDAT 355
            +S+ + PV+AH +A  +   LP++++  +       +     D  + +      P DA 
Sbjct: 544 KTSMSALPVNAHPAASRDLPPLPVSKQIQMVPRGSQMYAPPPADTFYQECRGAGPPFDAA 603

Query: 356 P 358
           P
Sbjct: 604 P 604

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>FAS2_CANAL (P43098) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:|
           Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase
           (EC 1.1.1.100) (Beta-ketoacyl reductase);
           3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41)
           (Beta-ketoacyl synth
          Length = 1885

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +2

Query: 44  KVIVFNDFPADKAKGLMQLAGKGIPVVQNVSATTPVA---DSPKVQPAVLAPASSLPSDP 214
           K I +   PAD A        +  P     +  TP A    +P   PA   P  S+P +P
Sbjct: 86  KEIYYKPDPADLAPKETPKQEESTPSAPAAATPTPAAAAAPTPAPAPASAGPVESIPDEP 145

Query: 215 VDAH 226
           V A+
Sbjct: 146 VKAN 149

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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
 Frame = +2

Query: 65  FPADKAKGLMQLAGKG---IPVVQNVSATTPV-ADSPKVQPAVLAPASSLPSDPVDAHK- 229
           F  D      +L GK     P  + VSA TP  A SP    A    A+S P+ PVD    
Sbjct: 321 FTVDNVLLPAELFGKSSSPAPAPEPVSAPTPTPAKSPSPVEAPSPTAASPPAPPVDESSP 380

Query: 230 ----SARPNASDLPIARKASLH 283
               S  P +S+   A+ A+ H
Sbjct: 381 EGAPSDSPTSSENSNAKNAAFH 402

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>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
 Frame = +2

Query: 137 ATTPVADSPKVQ-PAVLAPASSLPSDPVDAHKSARPNASDLPIA-RKASLHRFLEKRKDR 310
           A  P+ D P  + P    PA+ L      A   ARP A   P+A R+A        + +R
Sbjct: 126 AERPLVDRPVTERPLAERPAAELRPGAAKAAAPARPAAEAQPVAERRAPAEAAQAAQAER 185

Query: 311 LHAKAPYQASPSDATPVKK 367
             A+    A+ + A P +K
Sbjct: 186 RPAEKAQPAAAAKAAPPEK 204

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 29/122 (23%), Positives = 41/122 (33%)
 Frame = +2

Query: 68  PADKAKGLMQLAGKGIPVVQNVSATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNA 247
           P  +A+ L Q  G+          + PVA  P   PA   PAS  P       ++ R  +
Sbjct: 246 PVSQAQPLSQAQGR---------QSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTS 296

Query: 248 SDLPIARKASLHRFLEKRKDRLHAKAPYQASPSDATPVKKEFENQPWLGLGPNAALKPNQ 427
                  KAS              + P Q  P  A P ++  +  P    GP    +P  
Sbjct: 297 VSGQAPPKAS-----GAPPSGQQRQGPPQKPPGPAGPTRQASQAGPMPRTGPPTTQQPRP 351

Query: 428 *G 433
            G
Sbjct: 352 SG 353

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>IF2_XANCP (Q8P7U7) Translation initiation factor IF-2|
          Length = 916

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +2

Query: 134 SATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKAS 277
           SA  PVA +P    A   PA+  PS P  A + ARP A   P +R A+
Sbjct: 198 SAPAPVAAAPAPSSA---PAARAPSSPSSAPRPARP-AGASPASRPAT 241

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>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3|
          Length = 266

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +1

Query: 67  PSRQGK--GPNAVGWQGHPCCSERLCDHT----CRRQPQGPAGRAGP 189
           P R GK   P   G  GHP   ++ CD      C+  PQGP G  GP
Sbjct: 81  PGRPGKPGAPGLPGNPGHP--PQQPCDPITPPPCQPCPQGPPGPPGP 125

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>SYI_GLOVI (Q7NF75) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 983

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 402 GPSPSHGWFSNSFLTGVASEGEAWY 328
           G     GWF +S LT VA+EG A Y
Sbjct: 609 GSDQHRGWFQSSLLTCVATEGTAPY 633

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>IF2_XANC8 (Q4UWA2) Translation initiation factor IF-2|
          Length = 902

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +2

Query: 134 SATTPVADSPKVQPAVLAPASSLPSDPVDAHKSARPNASDLPIARKAS 277
           SA  PVA +P    A   PA+  PS P  A + ARP A   P +R A+
Sbjct: 184 SAPAPVAAAPAPSSA---PAARAPSSPSSAPRPARP-AGASPASRPAT 227

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>GAT26_ARATH (Q9LRH6) GATA transcription factor 26 (ZIM protein)|
          Length = 309

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 31/100 (31%), Positives = 43/100 (43%)
 Frame = +2

Query: 23  LTIFYGGKVIVFNDFPADKAKGLMQLAGKGIPVVQNVSATTPVADSPKVQPAVLAPASSL 202
           LTI + G+V VF+   ADK   ++ L G           +T +A  P+    V+  A   
Sbjct: 84  LTISFRGQVYVFDAVGADKVDAVLSLLG----------GSTELAPGPQ----VMELAQQQ 129

Query: 203 PSDPVDAHKSARPNASDLPIARKASLHRFLEKRKDRLHAK 322
              PV  ++S       LP  R  SL RF +KR  R   K
Sbjct: 130 NHMPVVEYQS----RCSLP-QRAQSLDRFRKKRNARCFEK 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,756,566
Number of Sequences: 219361
Number of extensions: 1896996
Number of successful extensions: 6691
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 6143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6682
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result