| Clone Name | basd27b02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479158.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1321 Score = 212 bits (107), Expect = 9e-52 Identities = 179/203 (88%) Strand = Plus / Plus Query: 218 gatgctcataagtctgctcgtccgaatgcttctgatctgccaattgctagaaaggcgtca 277 |||||||| ||| ||||||| |||||||||||||| |||| |||||||| ||||| ||| Sbjct: 697 gatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatca 756 Query: 278 cttcaccgattccttgagaagagaaaggatcgtctgcatgcaaaggcaccataccaagct 337 || ||| | |||||||||||||||||||||||||| |||||||| | |||||||| ||| Sbjct: 757 ctccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggct 816 Query: 338 tctccttcagatgcaacaccagtcaagaaggagtttgagaaccagccatggcttggacta 397 ||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||| Sbjct: 817 tctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggacta 876 Query: 398 gggccgaatgccgccctgaagcc 420 |||||||| |||| | ||||||| Sbjct: 877 gggccgaacgccgtcgtgaagcc 899 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 496 accatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaag 555 Query: 86 ggcctaatgcagttggctggcaagggca 113 ||| | |||||| ||||| ||||||||| Sbjct: 556 ggcttgatgcagctggctagcaagggca 583
>ref|XM_506466.1| PREDICTED Oryza sativa (japonica cultivar-group), P0616D06.125 mRNA Length = 1324 Score = 212 bits (107), Expect = 9e-52 Identities = 179/203 (88%) Strand = Plus / Plus Query: 218 gatgctcataagtctgctcgtccgaatgcttctgatctgccaattgctagaaaggcgtca 277 |||||||| ||| ||||||| |||||||||||||| |||| |||||||| ||||| ||| Sbjct: 700 gatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatca 759 Query: 278 cttcaccgattccttgagaagagaaaggatcgtctgcatgcaaaggcaccataccaagct 337 || ||| | |||||||||||||||||||||||||| |||||||| | |||||||| ||| Sbjct: 760 ctccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggct 819 Query: 338 tctccttcagatgcaacaccagtcaagaaggagtttgagaaccagccatggcttggacta 397 ||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||| Sbjct: 820 tctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggacta 879 Query: 398 gggccgaatgccgccctgaagcc 420 |||||||| |||| | ||||||| Sbjct: 880 gggccgaacgccgtcgtgaagcc 902 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 499 accatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaag 558 Query: 86 ggcctaatgcagttggctggcaagggca 113 ||| | |||||| ||||| ||||||||| Sbjct: 559 ggcttgatgcagctggctagcaagggca 586
>dbj|AK068566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152B02, full insert sequence Length = 1321 Score = 212 bits (107), Expect = 9e-52 Identities = 179/203 (88%) Strand = Plus / Plus Query: 218 gatgctcataagtctgctcgtccgaatgcttctgatctgccaattgctagaaaggcgtca 277 |||||||| ||| ||||||| |||||||||||||| |||| |||||||| ||||| ||| Sbjct: 697 gatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatca 756 Query: 278 cttcaccgattccttgagaagagaaaggatcgtctgcatgcaaaggcaccataccaagct 337 || ||| | |||||||||||||||||||||||||| |||||||| | |||||||| ||| Sbjct: 757 ctccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggct 816 Query: 338 tctccttcagatgcaacaccagtcaagaaggagtttgagaaccagccatggcttggacta 397 ||||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||| Sbjct: 817 tctccttcagatgcaaccccagtcaagaaggagcctgagagccagccatggctcggacta 876 Query: 398 gggccgaatgccgccctgaagcc 420 |||||||| |||| | ||||||| Sbjct: 877 gggccgaacgccgtcgtgaagcc 899 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 496 accatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaag 555 Query: 86 ggcctaatgcagttggctggcaagggca 113 ||| | |||||| ||||| ||||||||| Sbjct: 556 ggcttgatgcagctggctagcaagggca 583
>dbj|AK065604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034F24, full insert sequence Length = 1323 Score = 204 bits (103), Expect = 2e-49 Identities = 178/203 (87%) Strand = Plus / Plus Query: 218 gatgctcataagtctgctcgtccgaatgcttctgatctgccaattgctagaaaggcgtca 277 |||||||| ||| ||||||| |||||||||||||| |||| |||||||| ||||| ||| Sbjct: 699 gatgctcagaagcctgctcgcgcgaatgcttctgatatgcctattgctaggaaggcatca 758 Query: 278 cttcaccgattccttgagaagagaaaggatcgtctgcatgcaaaggcaccataccaagct 337 || ||| | |||||||||||||||||||||||||| |||||||| | |||||||| ||| Sbjct: 759 ctccacaggttccttgagaagagaaaggatcgtcttaatgcaaagacgccataccaggct 818 Query: 338 tctccttcagatgcaacaccagtcaagaaggagtttgagaaccagccatggcttggacta 397 ||||||||||||||||| ||||||||||||||| ||||| ||| |||||||| |||||| Sbjct: 819 tctccttcagatgcaaccccagtcaagaaggagcctgagagccaaccatggctcggacta 878 Query: 398 gggccgaatgccgccctgaagcc 420 |||||||| |||| | ||||||| Sbjct: 879 gggccgaacgccgtcgtgaagcc 901 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 498 accatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaag 557 Query: 86 ggcctaatgcagttggctggcaagggca 113 ||| | |||||| ||||| ||||||||| Sbjct: 558 ggcttgatgcagctggctagcaagggca 585
>gb|AY103589.1| Zea mays PCO155308 mRNA sequence Length = 1362 Score = 145 bits (73), Expect = 2e-31 Identities = 145/169 (85%) Strand = Plus / Plus Query: 242 aatgcttctgatctgccaattgctagaaaggcgtcacttcaccgattccttgagaagaga 301 |||||||||||| |||| ||| || ||||| || |||||||| ||||||||||||||| Sbjct: 766 aatgcttctgatatgcctattatgaggaaggcttctcttcaccgcttccttgagaagaga 825 Query: 302 aaggatcgtctgcatgcaaaggcaccataccaagcttctccttcagatgcaacaccagtc 361 |||||||| || |||||||| ||||||| ||| || ||||||||||||| |||||||| Sbjct: 826 aaggatcgcctcaatgcaaagacaccatatcaaactgctccttcagatgccgcaccagtc 885 Query: 362 aagaaggagtttgagaaccagccatggcttggactagggccgaatgccg 410 ||||||||| ||||| |||||||||||| ||| |||| |||||||||| Sbjct: 886 aagaaggagcctgagagccagccatggctcggattaggaccgaatgccg 934 Score = 77.8 bits (39), Expect = 3e-11 Identities = 93/111 (83%) Strand = Plus / Plus Query: 22 gctcaccatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 |||||| ||||||||||| ||||||||| | || || |||||||||| ||||||||||| Sbjct: 555 gctcacaatcttctatggcgggaaggtgctggtatttgacgatttccccgccgacaaggc 614 Query: 82 aaagggcctaatgcagttggctggcaagggcatccctgttgttcagaacgt 132 ||||| || |||||| |||| ||||||||| ||| || || |||||||| Sbjct: 615 aaaggatctgatgcagctggccagcaagggcagcccagtggtacagaacgt 665
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 25295633 accatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaag 25295692 Query: 86 ggcctaatgcagttggctggcaagggca 113 ||| | |||||| ||||| ||||||||| Sbjct: 25295693 ggcttgatgcagctggctagcaagggca 25295720 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 315 atgcaaaggcaccataccaagcttctccttcagatgcaacaccagtcaagaaggagtttg 374 |||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| || Sbjct: 25296135 atgcaaagacgccataccaggcttctccttcagatgcaaccccagtcaagaaggagcctg 25296194 Query: 375 agaaccagccatggcttggactagggccgaatgccgccctgaagcc 420 ||| |||||||||||| |||||||||||||| |||| | ||||||| Sbjct: 25296195 agagccagccatggctcggactagggccgaacgccgtcgtgaagcc 25296240 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 255 tgccaattgctagaaaggcgtcacttcaccgattccttgagaagagaaaggatcg 309 |||| |||||||| ||||| ||||| ||| | ||||||||||||||||||||||| Sbjct: 25295979 tgcctattgctaggaaggcatcactccacaggttccttgagaagagaaaggatcg 25296033
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 127 bits (64), Expect = 4e-26 Identities = 82/88 (93%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 112304 accatcttctatggtgggaaggtgctcgtgttcaacgacttcccagccgacaaggcaaag 112363 Query: 86 ggcctaatgcagttggctggcaagggca 113 ||| | |||||| ||||| ||||||||| Sbjct: 112364 ggcttgatgcagctggctagcaagggca 112391 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 315 atgcaaaggcaccataccaagcttctccttcagatgcaacaccagtcaagaaggagtttg 374 |||||||| | |||||||| |||||||||||||||||||| ||||||||||||||| || Sbjct: 112806 atgcaaagacgccataccaggcttctccttcagatgcaaccccagtcaagaaggagcctg 112865 Query: 375 agaaccagccatggcttggactagggccgaatgccgccctgaagcc 420 ||| |||||||||||| |||||||||||||| |||| | ||||||| Sbjct: 112866 agagccagccatggctcggactagggccgaacgccgtcgtgaagcc 112911 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 255 tgccaattgctagaaaggcgtcacttcaccgattccttgagaagagaaaggatcg 309 |||| |||||||| ||||| ||||| ||| | ||||||||||||||||||||||| Sbjct: 112650 tgcctattgctaggaaggcatcactccacaggttccttgagaagagaaaggatcg 112704
>ref|XM_470898.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1207 Score = 79.8 bits (40), Expect = 9e-12 Identities = 112/136 (82%) Strand = Plus / Plus Query: 235 tcgtccgaatgcttctgatctgccaattgctagaaaggcgtcacttcaccgattccttga 294 |||||| |||||| |||||||||| ||||| |||||||| |||||||| ||||| || Sbjct: 650 tcgtccaaatgctgctgatctgcctcaggctaggaaggcgtcgcttcaccggttcctcga 709 Query: 295 gaagagaaaggatcgtctgcatgcaaaggcaccataccaagcttctccttcagatgcaac 354 ||| ||||||||||| || || || || ||||| ||||| | ||| ||||||||||| | Sbjct: 710 gaaaagaaaggatcgccttcaggctaaagcaccctaccagggttccccttcagatgcttc 769 Query: 355 accagtcaagaaggag 370 || |||||||||||| Sbjct: 770 tccggtcaagaaggag 785 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 429 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 488 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 489 gacctgatgcagatggc 505
>dbj|AK099557.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034A17, full insert sequence Length = 1140 Score = 79.8 bits (40), Expect = 9e-12 Identities = 112/136 (82%) Strand = Plus / Plus Query: 235 tcgtccgaatgcttctgatctgccaattgctagaaaggcgtcacttcaccgattccttga 294 |||||| |||||| |||||||||| ||||| |||||||| |||||||| ||||| || Sbjct: 602 tcgtccaaatgctgctgatctgcctcaggctaggaaggcgtcgcttcaccggttcctcga 661 Query: 295 gaagagaaaggatcgtctgcatgcaaaggcaccataccaagcttctccttcagatgcaac 354 ||| ||||||||||| || || || || ||||| ||||| | ||| ||||||||||| | Sbjct: 662 gaaaagaaaggatcgccttcaggctaaagcaccctaccagggttccccttcagatgcttc 721 Query: 355 accagtcaagaaggag 370 || |||||||||||| Sbjct: 722 tccggtcaagaaggag 737 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 381 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 440 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 441 gacctgatgcagatggc 457
>dbj|AK061842.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E06, full insert sequence Length = 1174 Score = 79.8 bits (40), Expect = 9e-12 Identities = 112/136 (82%) Strand = Plus / Plus Query: 235 tcgtccgaatgcttctgatctgccaattgctagaaaggcgtcacttcaccgattccttga 294 |||||| |||||| |||||||||| ||||| |||||||| |||||||| ||||| || Sbjct: 621 tcgtccaaatgctgctgatctgcctcaggctaggaaggcgtcgcttcaccggttcctcga 680 Query: 295 gaagagaaaggatcgtctgcatgcaaaggcaccataccaagcttctccttcagatgcaac 354 ||| ||||||||||| || || || || ||||| ||||| | ||| ||||||||||| | Sbjct: 681 gaaaagaaaggatcgccttcaggctaaagcaccctaccagggttccccttcagatgcttc 740 Query: 355 accagtcaagaaggag 370 || |||||||||||| Sbjct: 741 tccggtcaagaaggag 756 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 400 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 459 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 460 gacctgatgcagatggc 476
>gb|AY109134.1| Zea mays PCO105565 mRNA sequence Length = 1235 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 287 ttccttgagaagagaaaggatcgtctgcatgcaaaggcaccataccaagcttctccttca 346 ||||||||||||||||||||||| || ||| || |||||||||| | ||| |||||| Sbjct: 681 ttccttgagaagagaaaggatcgccttactgcgaaagcaccatacccgggttccccttca 740 Query: 347 gatgcaacaccagtcaagaaggag 370 |||| ||||| || ||||||||| Sbjct: 741 gatgttacacctgtgaagaaggag 764
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 263 gctagaaaggcgtcacttcaccgattccttgagaagagaaaggatcg 309 ||||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 16222513 gctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcg 16222467 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Minus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 16222866 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 16222807 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 16222806 gacctgatgcagatggc 16222790 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 ||||||||||| || |||| ||| | |||||| |||||||||| ||||| ||||| Sbjct: 4218910 accatcttctacggcgggagcgtggtggtgttcgacgatttccccgccgagaaggc 4218965
>gb|AC118134.3| Oryza sativa chromosome 3 BAC OSJNBb0041J20 genomic sequence, complete sequence Length = 135585 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 263 gctagaaaggcgtcacttcaccgattccttgagaagagaaaggatcg 309 ||||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 20529 gctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcg 20483 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Minus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 20882 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 20823 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 20822 gacctgatgcagatggc 20806
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 263 gctagaaaggcgtcacttcaccgattccttgagaagagaaaggatcg 309 ||||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 16216146 gctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcg 16216100 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Minus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 16216499 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 16216440 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 16216439 gacctgatgcagatggc 16216423 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 ||||||||||| || |||| ||| | |||||| |||||||||| ||||| ||||| Sbjct: 4219019 accatcttctacggcgggagcgtggtggtgttcgacgatttccccgccgagaaggc 4219074
>dbj|AK106184.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D06, full insert sequence Length = 1291 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 263 gctagaaaggcgtcacttcaccgattccttgagaagagaaaggatcg 309 ||||| |||||||| |||||||| ||||| ||||| ||||||||||| Sbjct: 662 gctaggaaggcgtcgcttcaccggttcctcgagaaaagaaaggatcg 708 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggcaaag 85 ||||||||||| ||||||||||| | ||||| | || |||||||| || ||||| ||| Sbjct: 309 accatcttctacggtgggaaggtcctggtgtttgatgacttcccagctgagaaggccaag 368 Query: 86 ggcctaatgcagttggc 102 | ||| |||||| |||| Sbjct: 369 gacctgatgcagatggc 385
>ref|NM_202133.1| Arabidopsis thaliana unknown protein AT1G19180 transcript variant AT1G19180.2 mRNA, complete cds Length = 1507 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 1003 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 1049
>ref|NM_101776.2| Arabidopsis thaliana unknown protein AT1G19180 transcript variant AT1G19180.1 mRNA, complete cds Length = 1329 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 825 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 871
>gb|AF332421.1| Arabidopsis thaliana unknown protein (At1g19180) mRNA, complete cds Length = 762 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 607 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 653
>gb|AY081633.1| Arabidopsis thaliana unknown protein (At1g19180) mRNA, complete cds Length = 793 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 607 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 653
>gb|AY081738.1| Arabidopsis thaliana At1g19180/T29M8_5 mRNA, complete cds Length = 762 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 607 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 653
>gb|AY065146.1| Arabidopsis thaliana unknown protein (At1g19180; T29M8.5) mRNA, complete cds Length = 1286 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 806 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 852
>gb|AY039894.1| Arabidopsis thaliana At1g19180/T29M8_5 mRNA, complete cds Length = 1131 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 801 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 847
>emb|BX816550.1|CNS0ABUI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZG10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1384 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 976 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 1022
>emb|BX817360.1|CNS0AB8B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL18ZC04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1167 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 780 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 826
>emb|BX817114.1|CNS0AAHD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1225 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 786 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 832
>gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence Length = 58738 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 12550 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 12596
>gb|AY087830.1| Arabidopsis thaliana clone 38751 mRNA, complete sequence Length = 1170 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 260 attgctagaaaggcgtcacttcaccgattccttgagaagagaaagga 306 |||||||||| || ||||||||||| ||| | |||||||||||||| Sbjct: 825 attgctagaagagcttcacttcaccggttcttggagaagagaaagga 871
>gb|AY106263.1| Zea mays PCO149364 mRNA sequence Length = 422 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 19 gccgctcaccatcttctatggtgggaaggtgatcgtgttcaacgatttccc 69 |||||||||||||||||| || || | |||| |||||||| |||| ||||| Sbjct: 227 gccgctcaccatcttctacggcggcagggtggtcgtgttcgacgacttccc 277
>ref|NM_106153.2| Arabidopsis thaliana unknown protein AT1G74950 mRNA, complete cds Length = 1230 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 764 tcacttcatcggttccttgagaagaggaaggat 796
>gb|AC170085.2| Mus musculus chromosome 3, clone wi1-1851D10, complete sequence Length = 41209 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 catgaatattttatcccatat 534 ||||||||||||||||||||| Sbjct: 33905 catgaatattttatcccatat 33885
>dbj|AB226490.1| Aspergillus oryzae cDNA, contig sequence: AoEST3352 Length = 871 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 attcggcacgaggcaagagcc 21 ||||||||||||||||||||| Sbjct: 2 attcggcacgaggcaagagcc 22
>gb|AF344319.1| Arabidopsis thaliana clone C00218 (f) unknown protein (At1g74950) mRNA, complete cds Length = 750 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 628 tcacttcatcggttccttgagaagaggaaggat 660
>gb|BT006301.1| Arabidopsis thaliana At1g74950 mRNA, complete cds Length = 750 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 628 tcacttcatcggttccttgagaagaggaaggat 660
>gb|AF386959.1|AF386959 Arabidopsis thaliana Unknown protein (F9E10.20) mRNA, complete cds Length = 1224 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 764 tcacttcatcggttccttgagaagaggaaggat 796
>emb|BX814204.1|CNS0ADRB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB60ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1148 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 739 tcacttcatcggttccttgagaagaggaaggat 771
>emb|BX817618.1|CNS0AAQ3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL33ZA03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1106 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 737 tcacttcatcggttccttgagaagaggaaggat 769
>gb|AC109363.3| Homo sapiens BAC clone RP11-799C4 from 2, complete sequence Length = 48994 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 183 tggccccagcaagtagtttgc 203 ||||||||||||||||||||| Sbjct: 3637 tggccccagcaagtagtttgc 3657
>gb|AC154798.2| Mus musculus BAC clone RP24-495N16 from chromosome 17, complete sequence Length = 138195 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 468 tttccagaaatatctgaaatg 488 ||||||||||||||||||||| Sbjct: 76404 tttccagaaatatctgaaatg 76424
>gb|AC013258.5|AC013258 Arabidopsis thaliana chromosome 1 BAC F9E10 genomic sequence, complete sequence Length = 97263 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 54234 tcacttcatcggttccttgagaagaggaaggat 54266
>gb|AY086993.1| Arabidopsis thaliana clone 3024 mRNA, complete sequence Length = 955 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 765 tcacttcatcggttccttgagaagaggaaggat 797
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence Length = 115721 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 275 tcacttcaccgattccttgagaagagaaaggat 307 |||||||| || |||||||||||||| |||||| Sbjct: 25897 tcacttcatcggttccttgagaagaggaaggat 25929
>dbj|AP002515.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-3159I7, complete sequences Length = 166063 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 475 aaatatctgaaatgttctttg 495 ||||||||||||||||||||| Sbjct: 138969 aaatatctgaaatgttctttg 138949
>ref|XM_470544.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 630 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 ||||||||||| || |||| ||| | |||||| |||||||||| ||||| ||||| Sbjct: 301 accatcttctacggcgggagcgtggtggtgttcgacgatttccccgccgagaaggc 356
>gb|AC132416.2| Mus musculus BAC clone RP23-251A5 from chromosome 6, complete sequence Length = 157472 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 atgcagttggctggcaaggg 111 |||||||||||||||||||| Sbjct: 129862 atgcagttggctggcaaggg 129881
>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence Length = 167559 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 aatattttatcccatatcat 537 |||||||||||||||||||| Sbjct: 134202 aatattttatcccatatcat 134183
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 gccggccgtgctggccccagcaag 195 |||||||||||||||||| ||||| Sbjct: 3275418 gccggccgtgctggccccggcaag 3275395 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 172 gccggccgtgctggccccagcaag 195 |||||||||||||||||| ||||| Sbjct: 1920855 gccggccgtgctggccccggcaag 1920832
>gb|AC161059.4| Mus musculus BAC clone RP23-82L9 from chromosome 6, complete sequence Length = 294389 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 atgcagttggctggcaaggg 111 |||||||||||||||||||| Sbjct: 24344 atgcagttggctggcaaggg 24325
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 ccagccggccgtgctggccccagc 192 ||||| |||||||||||||||||| Sbjct: 1045507 ccagcgggccgtgctggccccagc 1045484
>gb|AC025919.8| Homo sapiens chromosome 15 clone RP11-947O24 map 15q21.1, complete sequence Length = 188439 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 attccttgagaagagaaagg 305 |||||||||||||||||||| Sbjct: 35392 attccttgagaagagaaagg 35373
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 ||||||||||| || |||| ||| | |||||| |||||||||| ||||| ||||| Sbjct: 119547 accatcttctacggcgggagcgtggtggtgttcgacgatttccccgccgagaaggc 119602
>gb|BC092243.1| Xenopus laevis cDNA clone MGC:99018 IMAGE:5515836, complete cds Length = 4809 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 cttcaccgattccttgagaa 297 |||||||||||||||||||| Sbjct: 2508 cttcaccgattccttgagaa 2527
>dbj|AK073589.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051K03, full insert sequence Length = 1111 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 ||||||||||| || |||| ||| | |||||| |||||||||| ||||| ||||| Sbjct: 401 accatcttctacggcgggagcgtggtggtgttcgacgatttccccgccgagaaggc 456
>gb|AC115849.13| Mus musculus chromosome 6, clone RP24-249N21, complete sequence Length = 130241 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 atgcagttggctggcaaggg 111 |||||||||||||||||||| Sbjct: 59282 atgcagttggctggcaaggg 59263
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 26 accatcttctatggtgggaaggtgatcgtgttcaacgatttcccagccgacaaggc 81 ||||||||||| || |||| ||| | |||||| |||||||||| ||||| ||||| Sbjct: 47525 accatcttctacggcgggagcgtggtggtgttcgacgatttccccgccgagaaggc 47580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,633,393 Number of Sequences: 3902068 Number of extensions: 4633393 Number of successful extensions: 89143 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88825 Number of HSP's gapped (non-prelim): 318 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)