ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAF1_RAT (P11345) RAF proto-oncogene serine/threonine-protein ki... 32 1.6
2RAF1_MOUSE (Q99N57) RAF proto-oncogene serine/threonine-protein ... 32 1.6
3RAF1_HUMAN (P04049) RAF proto-oncogene serine/threonine-protein ... 32 1.6
4CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21 31 3.5
5DRL19_ARATH (Q9C8T9) Putative disease resistance protein At1g63350 30 7.8

>RAF1_RAT (P11345) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (Raf-1) (C-RAF) (cRaf)
          Length = 648

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +2

Query: 404 QGVSRSPTRLRHMLSSAYVNLAISRPCGHNNNRSKRSRSKDLLKMVCITSTALEISYATR 583
           + VSR P   +H  S+ +     +       + S+R RS     +  +++T    S    
Sbjct: 219 ESVSRMPASSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVDSRMIE 278

Query: 584 CHMRSHNLARCASSVSSSDHNLARCA-RLPKTP 679
             +RSH+ +   S++SSS +NL+      PKTP
Sbjct: 279 DAIRSHSESASPSALSSSPNNLSPTGWSQPKTP 311



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>RAF1_MOUSE (Q99N57) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (Raf-1) (C-RAF) (cRaf)
          Length = 648

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +2

Query: 404 QGVSRSPTRLRHMLSSAYVNLAISRPCGHNNNRSKRSRSKDLLKMVCITSTALEISYATR 583
           + VSR P   +H  S+ +     +       + S+R RS     +  +++T    S    
Sbjct: 219 ESVSRMPASSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLHVDSRMIE 278

Query: 584 CHMRSHNLARCASSVSSSDHNLARCA-RLPKTP 679
             +RSH+ +   S++SSS +NL+      PKTP
Sbjct: 279 DAIRSHSESASPSALSSSPNNLSPTGWSQPKTP 311



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>RAF1_HUMAN (P04049) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (Raf-1) (C-RAF) (cRaf)
          Length = 648

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +2

Query: 404 QGVSRSPTRLRHMLSSAYVNLAISRPCGHNNNRSKRSRSKDLLKMVCITSTALEISYATR 583
           + VSR P   +H  S+ +     +       + S+R RS     +  +++T    S    
Sbjct: 219 ESVSRMPVSSQHRYSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTTLPVDSRMIE 278

Query: 584 CHMRSHNLARCASSVSSSDHNLARCA-RLPKTP 679
             +RSH+ +   S++SSS +NL+      PKTP
Sbjct: 279 DAIRSHSESASPSALSSSPNNLSPTGWSQPKTP 311



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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
 Frame = +2

Query: 380 TNASDTFSQGVSRSPT--RLRHMLS-SAYVNLAISR-----PCGHNNNRSKRSRSKDLLK 535
           ++A  + S    RSPT     H+ S S+Y + + SR     P  H+ +   RSRS+   +
Sbjct: 229 SSARSSSSHASPRSPTPRTTSHVASYSSYSSRSRSRSRSRSPLSHSRSSRSRSRSRSRSR 288

Query: 536 MVCITSTALEISYATRCHMRSHNLARCASSVSSS 637
               +  +   S  +R   RS + +RCASS S S
Sbjct: 289 SRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRS 322



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>DRL19_ARATH (Q9C8T9) Putative disease resistance protein At1g63350|
          Length = 898

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = +2

Query: 437 HMLSSAYVNLAISRPCGHNNNRSKRSRSKDLLKMVCITSTALEISYATRCHMRSHNLARC 616
           H L S    L IS     N N S+ S        + +T   L+      CH     + R 
Sbjct: 680 HRLMSCIRFLKISNNSNRNRNSSRIS--------LPVTMDRLQEFTIEHCHTSEIKMGRI 731

Query: 617 ASSVSSSDHNLARCARLPKTPFL 685
            S  S  + NL+ C RL +  FL
Sbjct: 732 CSFSSLIEVNLSNCRRLRELTFL 754


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,205,387
Number of Sequences: 219361
Number of extensions: 2169047
Number of successful extensions: 4198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4197
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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