>Y4844_ARATH (O49453) Protein At4g28440|
          Length = 153

 Score = 72.8 bits (177), Expect(2) = 4e-27
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = +2

Query: 116 FDKVEELRPGTYGHNLQLRVLSSKPVV-----LHRQHQGGRAGNNMRIAECIVGDDTGVV 280
           F KVE+L+PGT GH L ++V+ +  VV             R     RI EC++GD+TG +
Sbjct: 22  FVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCI 81

Query: 281 VFTARNEQVDIMKPGA 328
           +FTARN+QVD+MKPGA
Sbjct: 82  LFTARNDQVDLMKPGA 97



 Score = 68.6 bits (166), Expect(2) = 4e-27
 Identities = 32/56 (57%), Positives = 42/56 (75%)
 Frame = +3

Query: 321 PGPVVEARKARVDMYKGSMRLAVDKWGTLKAAESPADFKVKEDNNVSLIEFELMTV 488
           PG  V  R +R+DM+KG+MRL VDKWG ++A    A F VKEDNN+SL+E+EL+ V
Sbjct: 95  PGATVILRNSRIDMFKGTMRLGVDKWGRIEAT-GAASFTVKEDNNLSLVEYELINV 149

>NOTC3_RAT (Q9R172) Neurogenic locus notch homolog protein 3 precursor (Notch|
           3) [Contains: Notch 3 extracellular truncation; Notch 3
           intracellular domain]
          Length = 2319

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 289 CEYDDPGV---VADDALCDAHVVAGPSALVLPVEDDGLGAEDPELEVVAVGARP 137
           C  DD  V     +DA+CD + V+G +    P    G GA D +++  ++GA P
Sbjct: 351 CHLDDACVSNPCHEDAICDTNPVSGRAICTCPPGFTG-GACDQDVDECSIGANP 403

>NOTC3_MOUSE (Q61982) Neurogenic locus notch homolog protein 3 precursor (Notch|
           3) [Contains: Notch 3 extracellular truncation; Notch 3
           intracellular domain]
          Length = 2318

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 289 CEYDDPGV---VADDALCDAHVVAGPSALVLPVEDDGLGAEDPELEVVAVGARP 137
           C  DD  V     +DA+CD + V+G +    P    G GA D +++  ++GA P
Sbjct: 350 CHLDDACVSNPCHEDAICDTNPVSGRAICTCPPGFTG-GACDQDVDECSIGANP 402

>MUTS_PROMA (Q7V9M5) DNA mismatch repair protein mutS|
          Length = 914

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 393 KWGTLKAAESPADFKVKEDNNVSLIEFELMTV 488
           KWG   A  S  +F VKE N +  +E +L+ +
Sbjct: 229 KWGLASADISTGEFTVKEGNGIDTLEQDLLNI 260

>LPXH_CHRVO (Q7NT75) UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-)|
          Length = 237

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 431 VRRALGGLERPPLVHGQAHRPLVHVH 354
           VR  L     P L+HG  HRP  H+H
Sbjct: 179 VRELLAAHGWPTLIHGHTHRPAHHLH 204

>PDLI5_HUMAN (Q96HC4) PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like|
           PDZ and LIM domains protein)
          Length = 595

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 19  PRRDLISNLCSAPPSTTNQPTKQKQGKGSEDDVRQGGGAPAGH 147
           PR+  ++++CS     T+Q   + Q +GS+ D +Q  G P  H
Sbjct: 203 PRQPTVTSVCSE----TSQELAEGQRRGSQGDSKQQNGPPRKH 241

>POLN_SMSV1 (P36286) Non-structural polyprotein [Contains: Unknown protein;|
           Helicase (2C-like protein) (P2C); 3A-like protein; Viral
           genome-linked protein (VPg); Thiol protease P3C (EC
           3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA
           polymerase (EC
          Length = 1879

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 292 CCEYDDPGVVADDALCDAHVVAGPSAL-VLPVEDDGLGAEDPE 167
           CCE  D GVV     C+        A+   P + DGL  ++PE
Sbjct: 102 CCEAKDGGVVRSCKTCNLKPAHDSKAVSFFPAQTDGLTGDEPE 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,111,115
Number of Sequences: 219361
Number of extensions: 1159933
Number of successful extensions: 3757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3755
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)