ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27a18 |
|---|---|
| Clone Library Name | barley_pub |
>IF4G2_HUMAN (P78344) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Death-associated protein 5) (DAP-5) Length = 907 Score = 49.3 bits (116), Expect = 6e-06 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Frame = +2 Query: 2 YFLSDDVPELIRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXT 178 Y S + E + ++E+ AP+ + L K+I L++DR + +KE A T Sbjct: 555 YLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 614 Query: 179 GD-IMKGFIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSG 355 D M+ F+ +L +DI S LA F ARA+I E++ IS +P SG Sbjct: 615 SDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELV------SISELAQPLESG 668 Query: 356 S 358 + Sbjct: 669 T 669
>IF4G2_RABIT (P79398) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 907 Score = 48.9 bits (115), Expect = 8e-06 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Frame = +2 Query: 2 YFLSDDVPELIRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXT 178 Y S + E + ++E+ AP+ + L K+I L++DR + +KE A T Sbjct: 555 YLNSGNANEAVNGVKEMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIGT 614 Query: 179 GD-IMKGFIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSG 355 D M+ F+ +L +DI S LA F ARA+I E++ IS +P SG Sbjct: 615 SDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELV------SISELAQPLESG 668 Query: 356 S 358 + Sbjct: 669 T 669
>IF4G2_MOUSE (Q62448) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Novel APOBEC-1 target 1) (Translation repressor NAT1) Length = 906 Score = 48.5 bits (114), Expect = 1e-05 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Frame = +2 Query: 2 YFLSDDVPELIRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXT 178 Y S + + + ++E+ AP+ + L K+I L++DR + +KE A T Sbjct: 554 YLNSGNANDAVSGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 613 Query: 179 GD-IMKGFIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSG 355 D M+ F+ +L+ +DI S LA F ARA+I E++ IS +P SG Sbjct: 614 SDNFMQAFLNVLEQCPKLEVDIPLVKSYLAQFAARAIISELV------SISELAQPLESG 667 Query: 356 S 358 + Sbjct: 668 T 668
>IF4G2_BOVIN (Q95L46) Eukaryotic translation initiation factor 4 gamma 2| (eIF-4-gamma 2) (eIF-4G 2) (eIF4G 2) (p97) (Fragment) Length = 136 Score = 40.8 bits (94), Expect = 0.002 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Frame = +2 Query: 2 YFLSDDVPELIRSLQELSAPE-YNAMFLKKLITLAMDRKNREKEMAXXXXXXXXXXXXXT 178 Y S + E + ++E+ AP+ + L K+I L++DR + +KE A T Sbjct: 42 YLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 101 Query: 179 GD-IMKGFIMLLQSAEDTALDIVDAPSELALFLAR 280 D M+ F+ +L +DI S LA F AR Sbjct: 102 SDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAAR 136
>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34| (eIF-(iso)4F p82-34) Length = 788 Score = 35.8 bits (81), Expect = 0.066 Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 1/97 (1%) Frame = +2 Query: 2 YFLSDDVPELIRSLQELSAPEYNAMFLKKLITLAMDR-KNREKEMAXXXXXXXXXXXXXT 178 YF + E + ++EL +P+Y+ +K+ I LA+D+ + + T Sbjct: 634 YFGIRILDEAQQCIEELQSPDYHPEIVKEAINLALDKGASFVDPLVKLLEHLYTKKTFKT 693 Query: 179 GDIMKGFIMLLQSAEDTALDIVDAPSELALFLARAVI 289 D+ G ++ ED +D+ AP++ +AR ++ Sbjct: 694 EDLENGCLLYGSLLEDIGIDLPKAPTQFGEVVARLIL 730
>FUMC_SYNY3 (Q55674) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 466 Score = 30.4 bits (67), Expect = 2.8 Identities = 19/72 (26%), Positives = 37/72 (51%) Frame = +2 Query: 182 DIMKGFIMLLQSAEDTALDIVDAPSELALFLARAVIDEVLVPLNLDDISSKLRPNSSGSQ 361 D+++ F +L ++A T D+ P++ A + A DE++ LD ++ SG+Q Sbjct: 44 DLIRAFAILKKAAAITNQDLGKLPADKAELIITAA-DEIIAGQWLDHFPLRIWQTGSGTQ 102 Query: 362 TVQMASSLLAAR 397 T + ++A R Sbjct: 103 TNMNVNEVIANR 114
>Y346_CHLPN (Q9Z8J7) Probable metal transport system membrane protein| CPn_0346/CP0414/CPj0346/CpB0353 Length = 324 Score = 30.0 bits (66), Expect = 3.6 Identities = 19/61 (31%), Positives = 33/61 (54%) Frame = -3 Query: 258 SLGASTMSRAVSSADCRSIMNPFMISPVENSSKLSEERSTEAISFSLFFLSIARVMSFLR 79 SLG T++ A +++ F+I + N+ K+SEE ST + LF LS+ ++ + Sbjct: 92 SLGTLTLA-----AMATAMLTGFLIYFIRNTFKVSEESSTALVFSLLFSLSLVLLVFMTK 146 Query: 78 N 76 N Sbjct: 147 N 147
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 29.6 bits (65), Expect = 4.7 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Frame = +2 Query: 14 DDVPELIRSLQELSAPEYNAMFLKKLITLAMDRKNREKE-MAXXXXXXXXXXXXXTGDIM 190 +D E + ++ELSA +F+K + ++R ++ M D Sbjct: 1231 NDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRDHMGHLLYQLVQSEKLSKQDFF 1290 Query: 191 KGFIMLLQSAEDTALDIVDAPSELALFLARAV 286 KGF L+ A+D A+DI + L+LA V Sbjct: 1291 KGFSETLELADDMAIDI----PHIWLYLAELV 1318
>TTC12_HUMAN (Q9H892) Tetratricopeptide repeat protein 12 (TPR repeat protein| 12) Length = 705 Score = 28.9 bits (63), Expect = 8.1 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -3 Query: 216 DCRSIMNPFMISPVENSSKLSEERSTEAISFSL 118 +CR+ +N MISP + + K +EE ++EA S+ Sbjct: 56 ECRTTLNKTMISPPQTALKSAEEINSEAFLASV 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,505,314 Number of Sequences: 219361 Number of extensions: 1352462 Number of successful extensions: 4483 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4481 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
