ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd27a17 |
|---|---|
| Clone Library Name | barley_pub |
>PG10_MYCTU (O53810) Hypothetical PE-PGRS family protein PE_PGRS10 precursor| Length = 801 Score = 32.3 bits (72), Expect = 0.31 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = -2 Query: 152 SPYLAP---SWPISTGRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 SP LAP + +TGRP+ +GA G G G WL + NGG G Sbjct: 96 SPLLAPINAQFVAATGRPLIGNGANGAPGTGANGGPGGWL-IGNGGAG 142 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -2 Query: 119 TGRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 TGRP+ +GA G G G WL NGG G Sbjct: 403 TGRPLIGNGANGTPGTGADGGAGGWL-FGNGGNG 435
>HTR6_HALSA (Q9HR92) Halobacterial transducer protein VI| Length = 778 Score = 30.8 bits (68), Expect = 0.91 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = +1 Query: 43 NQTVPIPGRPAPAISFAPSAQIGRPVEMGHEGAKYGDDGRP 165 N T PI G A A+ F P+AQ + ++ HE A DG P Sbjct: 237 NATSPIVG--ARAVGFQPAAQAAKEMDQAHETAYAPVDGTP 275
>WA22_MYCTU (P0A686) WAG22 antigen precursor| Length = 914 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 122 STGRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 +TGRP+ +GA G G G WL + NGG G Sbjct: 109 ATGRPLIGNGANGAPGTGANGGDAGWL-IGNGGAG 142
>WA22_MYCBO (P0A687) WAG22 antigen precursor| Length = 914 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 122 STGRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 +TGRP+ +GA G G G WL + NGG G Sbjct: 109 ATGRPLIGNGANGAPGTGANGGDAGWL-IGNGGAG 142
>PG03_MYCTU (P56877) Hypothetical PE-PGRS family protein PE_PGRS3 precursor| Length = 957 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 122 STGRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 +TGRP+ +GA G G G WL + NGG G Sbjct: 109 NTGRPLIGNGANGAPGTGANGGDGGWL-IGNGGAG 142
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Frame = +1 Query: 61 PGRPAPAISFAPSAQIGRPVEMGHEGAK--YGDDGRP 165 PG P P PS +GR G +GAK G DG P Sbjct: 1303 PGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPP 1339
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 16 LPNPPLSILNQTVPIPGRPAPAISFAPSA 102 +P+ P SIL Q +P+PG P+I SA Sbjct: 144 MPHAPSSILIQDIPLPGAQPPSILKKSSA 172
>CF136_HUMAN (Q5SQH8) Protein C6orf136| Length = 315 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = +1 Query: 1 APFFFLPNPPLSILNQTVPIPGRPAPAISFAPSAQIGRPVEMGHEG 138 +P F+ P PP + +P P P I SA + P G EG Sbjct: 49 SPLFWSPLPPRLPTQRLPQVPPLPLPQIQALSSAWVVLPPGKGEEG 94
>DSG1_BOVIN (Q03763) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1)| (DGI) (Pemphigus foliaceus antigen) Length = 1043 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = -2 Query: 137 PSWPISTGRPICADGAKEMAGAGRP 63 PSWP + P+C E G G P Sbjct: 779 PSWPPKSTEPVCPPQGTEPTGGGHP 803
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 52 VPIPGRPAPAISFAPSAQIGRPVEMGHEGAKYGDDG 159 + IPGRP P P+ + G P E G +G G DG Sbjct: 1101 IGIPGRPGPQGPPGPAGEKGAPGEKGPQGPA-GRDG 1135
>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 116 GRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 GRP+ +GA G G PG G L + NGG G Sbjct: 114 GRPLIGNGANGADGTGAPG-GPGGLLLGNGGNG 145
>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46| Length = 778 Score = 28.1 bits (61), Expect = 5.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 116 GRPICADGAKEMAGAGRPGMGTVWLRMDNGGLG 18 GRP+ +GA G G PG G L + NGG G Sbjct: 114 GRPLIGNGANGADGTGAPG-GPGGLLLGNGGNG 145
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/56 (30%), Positives = 19/56 (33%) Frame = -2 Query: 275 PSLSTMYSCMLFMTSRPMPDPTXXXXXXXXXXXXXXXXRPSSPYLAPSWPISTGRP 108 PSL + S TS P P P P P LAP P +T P Sbjct: 333 PSLPNVTSAPKKATSAPAPPPPPLPAAMSSASTNSVKATPVPPTLAPPLPNTTSVP 388
>COA3_AAV2 (P03135) Probable coat protein 3| Length = 504 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 10 FFLPNPPLSILNQTVPIPGRPAPAISFAPSAQIGRPVEMGH 132 F L +PP IL + P+P P+ S A A GH Sbjct: 433 FGLKHPPPQILIKNTPVPANPSTTFSAAKFASFITQYSTGH 473
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 52 VPIPGRPAPAISFAPSAQIGRPVEMGHEGAKYGDDG 159 + IPGRP P P+ + G P E G +G G DG Sbjct: 1101 IGIPGRPGPQGPPGPAGEKGLPGEKGPQGPA-GRDG 1135
>AB1IP_HUMAN (Q7Z5R6) Amyloid beta A4 precursor protein-binding family B member| 1-interacting protein (APBB1-interacting protein 1) (Rap1-GTP-interacting adapter molecule) (RIAM) (Proline-rich EVH1 ligand 1) (PREL-1) (Proline-rich protein 73) (Retinoic ac Length = 666 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = +1 Query: 19 PNPPLSILNQTVPIPGRPAPAISFAPSAQIGRPVEMGHEGAKYGDD 156 P PP + VP RP PA++ P R GH G G + Sbjct: 602 PPPPPAPAPAPVPDSARPPPAVAKRPPVPPKRQENPGHPGGAGGGE 647
>DSG1_HUMAN (Q02413) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1)| (DGI) (Pemphigus foliaceus antigen) Length = 1049 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -2 Query: 155 SSPYLAPSWPISTGRPICADGAKEMAGAGRP 63 S P L PSWP + P+C E +G P Sbjct: 767 SYPDLDPSWPPQSTEPVCLPQETEPVVSGHP 797 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,503,534 Number of Sequences: 219361 Number of extensions: 654178 Number of successful extensions: 3040 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3030 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
