>ref|NM_189475.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 170 gcgactgcctcctcttcgacctcgatgacacgctctacccggtg 213
           ||||| ||||| |||||||||| ||||||||||| || ||||||
Sbjct: 44  gcgacagcctcgtcttcgaccttgatgacacgctgtatccggtg 87

>dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133D12, full
           insert sequence
          Length = 1303

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 170 gcgactgcctcctcttcgacctcgatgacacgctctacccggtg 213
           ||||| ||||| |||||||||| ||||||||||| || ||||||
Sbjct: 294 gcgacagcctcgtcttcgaccttgatgacacgctgtatccggtg 337

>ref|XM_477103.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2292

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 156  cggccgccccacctgcgactgcctcctcttcgacc 190
            ||||||||||||| ||||||||||| ||| |||||
Sbjct: 1626 cggccgccccacccgcgactgcctcttctccgacc 1660

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 156     cggccgccccacctgcgactgcctcctcttcgacc 190
               ||||||||||||| ||||||||||| ||| |||||
Sbjct: 5923774 cggccgccccacccgcgactgcctcttctccgacc 5923740



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     gacggccgccccacctgcga 173
               ||||||||||||||||||||
Sbjct: 2461677 gacggccgccccacctgcga 2461658

>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 156   cggccgccccacctgcgactgcctcctcttcgacc 190
             ||||||||||||| ||||||||||| ||| |||||
Sbjct: 66222 cggccgccccacccgcgactgcctcttctccgacc 66188

>dbj|AK120944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037N02, full
            insert sequence
          Length = 2827

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 156  cggccgccccacctgcgactgcctcctcttcgacc 190
            ||||||||||||| ||||||||||| ||| |||||
Sbjct: 1856 cggccgccccacccgcgactgcctcttctccgacc 1890

>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 171 cgactgcctcctcttcgacctcgatgacac 200
           ||||||||| |||||||||||||| |||||
Sbjct: 210 cgactgcctgctcttcgacctcgacgacac 239

>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete
              sequence
          Length = 166888

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 156    cggccgccccacctgcgactgcctc 180
              ||||||||||||| |||||||||||
Sbjct: 135845 cggccgccccacccgcgactgcctc 135821

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 156      cggccgccccacctgcgactgcctc 180
                ||||||||||||| |||||||||||
Sbjct: 33529235 cggccgccccacccgcgactgcctc 33529259

>gb|AE012315.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 223
            of 460 of the complete genome
          Length = 11231

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 263  tcgacaagctcggcatcgaca 283
            |||||||||||||||||||||
Sbjct: 4671 tcgacaagctcggcatcgaca 4651

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 263     tcgacaagctcggcatcgaca 283
               |||||||||||||||||||||
Sbjct: 2516116 tcgacaagctcggcatcgaca 2516136

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 156      cggccgccccacctgcgactgcctc 180
                ||||||||||||| |||||||||||
Sbjct: 33619707 cggccgccccacccgcgactgcctc 33619731

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 266     acaagctcggcatcgacaagg 286
               |||||||||||||||||||||
Sbjct: 8553227 acaagctcggcatcgacaagg 8553247



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 146     acggcgacgacggccgcccc 165
               ||||||||||||||||||||
Sbjct: 6013895 acggcgacgacggccgcccc 6013876

>dbj|AK065100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001N01, full
            insert sequence
          Length = 2646

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 156  cggccgccccacctgcgactgcctc 180
            ||||||||||||| |||||||||||
Sbjct: 1811 cggccgccccacccgcgactgcctc 1835

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 138     cgccaagtacggcgacgacggccgc 162
               ||||||||||||||||||| |||||
Sbjct: 1616799 cgccaagtacggcgacgaccgccgc 1616775

>dbj|AB070944.1| Streptomyces avermitilis polyketide-4 biosynthetic gene cluster
          Length = 19601

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  acaagctcggcatcgacaagg 286
            |||||||||||||||||||||
Sbjct: 5167 acaagctcggcatcgacaagg 5187

>ref|XM_476616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1245

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  gacggccgccccacctgcga 173
            ||||||||||||||||||||
Sbjct: 1222 gacggccgccccacctgcga 1203

>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence
          Length = 357655

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 253    gaatacatggtcgacaagctcggc 276
              ||||||||| ||||||||||||||
Sbjct: 339745 gaatacatgctcgacaagctcggc 339768

>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 136     ggcgccaagtacggcgacgacggc 159
               ||||||||||||| ||||||||||
Sbjct: 3360984 ggcgccaagtacgacgacgacggc 3360961

>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 143    agtacggcgacgacggccgc 162
              ||||||||||||||||||||
Sbjct: 146393 agtacggcgacgacggccgc 146412

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 107     tcggccggccggtcgaaatgggcc 130
               ||||||||||||| ||||||||||
Sbjct: 1014301 tcggccggccggtggaaatgggcc 1014278

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 280     gacaagggcgtcagcctcga 299
               ||||||||||||||||||||
Sbjct: 2839163 gacaagggcgtcagcctcga 2839144

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    caagctcggcatcgacaagg 286
              ||||||||||||||||||||
Sbjct: 954149 caagctcggcatcgacaagg 954168

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      gacggccgccccacctgcga 173
                ||||||||||||||||||||
Sbjct: 16174431 gacggccgccccacctgcga 16174412

>gb|AF320981.3| Pseudomonas sp. S-47 B1,2O large a subunit (XylX), B1,2O small b
             subunit (XylY), B1,2O reductase component (XylZ),
             4CBA-dihydrodiol dehydrogenase (xylL), probable plant-type
             ferredoxin (xylT), catechol 2,3-dioxygenase (xylE),
             hydroxymuconic semialdehyde dehydrogenase (xylG),
             hydroxymuconic semialdehyde hydrolase (xylF),
             2-oxopent-4-enoate hydrotase (xylJ), acetaldehyde
             dehydrogenase (xylQ), 2-oxo-4-hydroxy pentanoate aldolase
             (xylK), 4-oxalocrotonate decarboxylase (xylI),
             4-oxalocrotonate tautomerase (xylH), putative transposase,
             regulatory protein (xylS), and regulatory protein (xylR)
             genes, complete cds
          Length = 16886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 277   atcgacaagggcgtcagcctcgag 300
             |||||| |||||||||||||||||
Sbjct: 16305 atcgaccagggcgtcagcctcgag 16328

>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gacggccgccccacctgcga 173
             ||||||||||||||||||||
Sbjct: 26657 gacggccgccccacctgcga 26638

>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gacggccgccccacctgcga 173
             ||||||||||||||||||||
Sbjct: 35424 gacggccgccccacctgcga 35405

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 159     ccgccccacctgcgactgcc 178
               ||||||||||||||||||||
Sbjct: 1606973 ccgccccacctgcgactgcc 1606954

>gb|U51165.1|COU51165 Cycloclasticus oligotrophus XYLX (XYLX), partial cds, membrane
            protein (XYLM), glutathione S-transferase (XYLK),
            2-hydroxy-5-methyl-6-oxohexa-2,4-dienoate dehydrogenase
            (XYLG), iron sulfur protein large subunit (XYLC1), iron
            sulfur protein small subunit (XYLC2), genes, complete cds
          Length = 5729

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 126  gggccacgagggcgccaagtacgg 149
            |||||||||||| |||||||||||
Sbjct: 4546 gggccacgagggtgccaagtacgg 4523

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 154      gacggccgccccacctgcga 173
                ||||||||||||||||||||
Sbjct: 16127664 gacggccgccccacctgcga 16127645

>emb|BX649219.2|CNS09SBY Oryza sativa chromosome 12, . BAC B1097F04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 165955

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gacggccgccccacctgcga 173
             ||||||||||||||||||||
Sbjct: 68912 gacggccgccccacctgcga 68931


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,047,760
Number of Sequences: 3902068
Number of extensions: 2047760
Number of successful extensions: 44324
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43581
Number of HSP's gapped (non-prelim): 743
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)