ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK099013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 436 e-119
2dbj|AK061460.1| Oryza sativa (japonica cultivar-group) cDNA clon... 436 e-119
3dbj|AK098976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 428 e-117
4dbj|AK104717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 422 e-115
5gb|BT016760.1| Zea mays clone Contig593 mRNA sequence 412 e-112
6gb|AY596526.1| Saccharum officinarum clone SCCCLR1024D04, comple... 404 e-109
7gb|AY105223.1| Zea mays PCO063855 mRNA sequence 404 e-109
8gb|BT017398.1| Zea mays clone EL01N0328F07.c mRNA sequence 396 e-107
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
10dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
11dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
12gb|BT014482.1| Lycopersicon esculentum clone 133834R, mRNA sequence 54 5e-04
13ref|NM_112112.2| Arabidopsis thaliana unknown protein AT3G12760 ... 44 0.49
14gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosom... 44 0.49
15gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome... 44 0.49
16gb|AY150404.1| Arabidopsis thaliana unknown protein (At3g12760) ... 44 0.49
17gb|AY050926.1| Arabidopsis thaliana unknown protein (At3g12760) ... 44 0.49
18dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.49
19gb|AC166081.3| Mus musculus 10 BAC RP24-184F11 (Roswell Park Can... 42 1.9
20gb|AC153367.5| Mus musculus 10 BAC RP23-182A11 (Roswell Park Can... 42 1.9
21ref|NM_130152.2| Arabidopsis thaliana unknown protein AT2G45890 ... 40 7.6
22gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, c... 40 7.6
23gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 40 7.6
24gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complet... 40 7.6
25emb|AL024509.1|HS522P13 Human DNA sequence from clone RP3-522P13... 40 7.6
26emb|BX537251.10| Zebrafish DNA sequence from clone DKEY-249G23 i... 40 7.6
27emb|BX005457.10| Zebrafish DNA sequence from clone DKEY-216J10 i... 40 7.6
28gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map... 40 7.6
29emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chr... 40 7.6
30emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on ch... 40 7.6

>dbj|AK099013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116N23, full
           insert sequence
          Length = 1122

 Score =  436 bits (220), Expect = e-119
 Identities = 340/380 (89%)
 Strand = Plus / Plus

                                                                       
Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 133 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 192

                                                                       
Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298
           || || |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||
Sbjct: 193 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 252

                                                                       
Query: 299 tttgattatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagat 358
           ||||||| |||||| ||||| |||||  ||||| |||| || ||||| ||||||||||||
Sbjct: 253 tttgattttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagat 312

                                                                       
Query: 359 ctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaa 418
           || |||| |||||||||||||| ||||| |||||||||||||||||| ||   |||||| 
Sbjct: 313 ctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctcag 372

                                                                       
Query: 419 ttctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcac 478
           || ||||  || ||   ||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 373 ttttgcactgatcttcaggtggatccccaggatattgttatgcttgtcatatcatggcac 432

                                                                       
Query: 479 atgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtca 538
           |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 433 atgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtca 492

                               
Query: 539 attggggtagattcaattga 558
           |||||||| |||||||||||
Sbjct: 493 attggggtggattcaattga 512



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>dbj|AK061460.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B04, full
           insert sequence
          Length = 1173

 Score =  436 bits (220), Expect = e-119
 Identities = 340/380 (89%)
 Strand = Plus / Plus

                                                                       
Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 164 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 223

                                                                       
Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298
           || || |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||
Sbjct: 224 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 283

                                                                       
Query: 299 tttgattatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagat 358
           ||||||| |||||| ||||| |||||  ||||| |||| || ||||| ||||||||||||
Sbjct: 284 tttgattttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagat 343

                                                                       
Query: 359 ctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaa 418
           || |||| |||||||||||||| ||||| |||||||||||||||||| ||   |||||| 
Sbjct: 344 ctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctcag 403

                                                                       
Query: 419 ttctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcac 478
           || ||||  || ||   ||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 404 ttttgcactgatcttcaggtggatccccaggatattgttatgcttgtcatatcatggcac 463

                                                                       
Query: 479 atgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtca 538
           |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 464 atgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtca 523

                               
Query: 539 attggggtagattcaattga 558
           |||||||| |||||||||||
Sbjct: 524 attggggtggattcaattga 543



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>dbj|AK098976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090L17, full
           insert sequence
          Length = 1140

 Score =  428 bits (216), Expect = e-117
 Identities = 339/380 (89%)
 Strand = Plus / Plus

                                                                       
Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 133 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 192

                                                                       
Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298
           || || |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||
Sbjct: 193 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 252

                                                                       
Query: 299 tttgattatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagat 358
           ||||||| |||||| ||||| |||||  ||||| |||| || ||||| ||||||||||||
Sbjct: 253 tttgattttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagat 312

                                                                       
Query: 359 ctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaa 418
           || |||| |||||||||||||| ||||| |||||||||||||||||| ||   |||||| 
Sbjct: 313 ctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctcag 372

                                                                       
Query: 419 ttctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcac 478
           || ||||  |  ||   ||||||||| |||||||| || |||||||||||||||||||||
Sbjct: 373 ttttgcactggtcttcaggtggatccccaggatattgttatgcttgtcatatcatggcac 432

                                                                       
Query: 479 atgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtca 538
           |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct: 433 atgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtca 492

                               
Query: 539 attggggtagattcaattga 558
           |||||||| |||||||||||
Sbjct: 493 attggggtggattcaattga 512



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>dbj|AK104717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A08, full
           insert sequence
          Length = 1152

 Score =  422 bits (213), Expect = e-115
 Identities = 340/381 (89%), Gaps = 1/381 (0%)
 Strand = Plus / Plus

                                                                       
Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 142 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 201

                                                                       
Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298
           || || |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||
Sbjct: 202 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 261

                                                                       
Query: 299 tttga-ttatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaaga 357
           ||||| || |||||| ||||| |||||  ||||| |||| || ||||| |||||||||||
Sbjct: 262 tttgatttttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaaga 321

                                                                       
Query: 358 tctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctca 417
           ||| |||| |||||||||||||| ||||| |||||||||||||||||| ||   ||||||
Sbjct: 322 tctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctca 381

                                                                       
Query: 418 attctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggca 477
            || ||||  || ||   ||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 382 gttttgcactgatcttcaggtggatccccaggatattgttatgcttgtcatatcatggca 441

                                                                       
Query: 478 catgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtc 537
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 442 catgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtc 501

                                
Query: 538 aattggggtagattcaattga 558
           ||||||||| |||||||||||
Sbjct: 502 aattggggtggattcaattga 522



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>gb|BT016760.1| Zea mays clone Contig593 mRNA sequence
          Length = 1168

 Score =  412 bits (208), Expect = e-112
 Identities = 337/380 (88%)
 Strand = Plus / Plus

                                                                       
Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242
           |||||||||||||||||| ||||||||||||||| ||||||||| |||| || || || |
Sbjct: 161 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccattaccggcgcca 220

                                                                       
Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302
           | |||||||| ||||||||||| ||||||||||||||||||||||| |||||  ||||||
Sbjct: 221 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 280

                                                                       
Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362
           | |  ||||||||||| || ||||||||||||   ||| |||| |||||||||||| |||
Sbjct: 281 acttcttctatagccaacctcaggtttctgtggtcaatactcggcatcttgaagatattt 340

                                                                       
Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422
            || |||||| ||||||| ||||||||||||||| |||||||| || | ||||||||| |
Sbjct: 341 tcaacagatataaagaacctgatgctgatatgataatggtggaaggaatatctcaatttt 400

                                                                       
Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482
           |||| || |||  ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 401 gcaatgatctgcaggttgatcctcaggatattgtcatgcttgtcatatcatggcacatga 460

                                                                       
Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542
           |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 461 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcagtcaattg 520

                               
Query: 543 gggtagattcaattgagaag 562
           ||||||||||||| ||||||
Sbjct: 521 gggtagattcaatcgagaag 540



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>gb|AY596526.1| Saccharum officinarum clone SCCCLR1024D04, complete sequence
          Length = 1375

 Score =  404 bits (204), Expect = e-109
 Identities = 336/380 (88%)
 Strand = Plus / Plus

                                                                       
Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242
           |||||||||||||||||| ||||||||||||||| ||||||||| ||||||| || || |
Sbjct: 207 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccataaccggcgcca 266

                                                                       
Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302
           | |||||||| ||||||||||| ||||||||||||||||||||||| |||||  ||||||
Sbjct: 267 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 326

                                                                       
Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362
           | |  ||||||||||| || ||| |||||| |   ||| |||| |||||||||||| |||
Sbjct: 327 acttcttctatagccaacctcagatttctgcggtcaatactcggcatcttgaagatattt 386

                                                                       
Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422
            || |||||| ||||||| ||||| |||||||||||||||||| || | ||||||| | |
Sbjct: 387 tcaacagatataaagaacctgatggtgatatgatcatggtggaaggaatatctcaacttt 446

                                                                       
Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482
           |||| || |||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 gcaatgatctgcaggtggatcctcaggatattgtcatgcttgtcatatcatggcacatga 506

                                                                       
Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542
           |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 507 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcagtcaattg 566

                               
Query: 543 gggtagattcaattgagaag 562
           ||||||||||||| ||||||
Sbjct: 567 gggtagattcaatcgagaag 586



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>gb|AY105223.1| Zea mays PCO063855 mRNA sequence
          Length = 1286

 Score =  404 bits (204), Expect = e-109
 Identities = 336/380 (88%)
 Strand = Plus / Plus

                                                                       
Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242
           |||||||||||||||||| ||||||||||||||| ||||||||| |||| || || || |
Sbjct: 255 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccattaccggcgcca 314

                                                                       
Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302
           | |||||||| ||||||||||| ||||||||||||||||||||||| |||||  ||||||
Sbjct: 315 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 374

                                                                       
Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362
           | |  ||||||||||| || ||||||||||||   ||| |||| |||||||||||| |||
Sbjct: 375 acttcttctatagccaacctcaggtttctgtggtcaatactcggcatcttgaagatattt 434

                                                                       
Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422
            || |||||| ||||||| ||||||||||||||| |||||||| || | ||||||||| |
Sbjct: 435 tcaacagatataaagaacctgatgctgatatgataatggtggaaggaatatctcaatttt 494

                                                                       
Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482
           |||| || |||  ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 495 gcaatgatctgcaggttgatcctcaggatattgtcatgcttgtcatatcatggcacatga 554

                                                                       
Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542
           |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 555 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcaatcaattg 614

                               
Query: 543 gggtagattcaattgagaag 562
           ||||||||||||| ||||||
Sbjct: 615 gggtagattcaatcgagaag 634



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>gb|BT017398.1| Zea mays clone EL01N0328F07.c mRNA sequence
          Length = 1183

 Score =  396 bits (200), Expect = e-107
 Identities = 335/380 (88%)
 Strand = Plus / Plus

                                                                       
Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242
           |||||||||||||||||| ||||||||||||||| ||||||||| |||| || || || |
Sbjct: 131 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccattaccggcgcca 190

                                                                       
Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302
           | |||||||| ||||||||||| ||||||||||||||||||||||| |||||  ||||||
Sbjct: 191 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 250

                                                                       
Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362
           | |  ||||||||||| || ||||||||||||   ||| |||| |||||||||||| |||
Sbjct: 251 acttcttctatagccaacctcaggtttctgtggtcaatactcggcatcttgaagatattt 310

                                                                       
Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422
            || |||||| ||||||| ||||||||||||||| |||||||| || | ||||||||| |
Sbjct: 311 tcaacagatataaagaacctgatgctgatatgataatggtggaaggaatatctcaatttt 370

                                                                       
Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482
           ||   || |||  ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 371 gcggtgatctgcaggttgatcctcaggatattgtcatgcttgtcatatcatggcacatga 430

                                                                       
Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542
           |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 431 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcagtcaattg 490

                               
Query: 543 gggtagattcaattgagaag 562
           ||||||||||||| ||||||
Sbjct: 491 gggtagattcaatcgagaag 510



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                           
Query: 245     gagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttgat 304
               |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||||||
Sbjct: 6942173 gagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagcttttgat 6942114

                                                                           
Query: 305     tatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatctttac 364
               | |||||| ||||| |||||  ||||| |||| || ||||| |||||||||||||| |||
Sbjct: 6942113 tttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagatctgtac 6942054

                            
Query: 365     agcagatacaaag 377
               | |||||||||||
Sbjct: 6942053 aacagatacaaag 6942041



 Score =  145 bits (73), Expect = 2e-31
 Identities = 82/85 (96%)
 Strand = Plus / Minus

                                                                           
Query: 460     gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgtcaggaatt 519
               ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6940932 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgccaggaatt 6940873

                                        
Query: 520     cattgatggtctgcagtcaattggg 544
               ||||| ||| |||||||||||||||
Sbjct: 6940872 cattggtggactgcagtcaattggg 6940848



 Score =  103 bits (52), Expect = 6e-19
 Identities = 58/60 (96%)
 Strand = Plus / Minus

                                                                           
Query: 181     gcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgc 240
               |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 6942885 gcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggtgc 6942826



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 376     agaacgtgatgctgatatgatcatggtgga 405
               ||||| ||||| ||||||||||||||||||
Sbjct: 6941858 agaacctgatgttgatatgatcatggtgga 6941829



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>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0479H10
          Length = 139874

 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                          
Query: 245    gagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttgat 304
              |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||||||
Sbjct: 131698 gagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagcttttgat 131639

                                                                          
Query: 305    tatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatctttac 364
              | |||||| ||||| |||||  ||||| |||| || ||||| |||||||||||||| |||
Sbjct: 131638 tttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagatctgtac 131579

                           
Query: 365    agcagatacaaag 377
              | |||||||||||
Sbjct: 131578 aacagatacaaag 131566



 Score =  145 bits (73), Expect = 2e-31
 Identities = 82/85 (96%)
 Strand = Plus / Minus

                                                                          
Query: 460    gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgtcaggaatt 519
              ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 130457 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgccaggaatt 130398

                                       
Query: 520    cattgatggtctgcagtcaattggg 544
              ||||| ||| |||||||||||||||
Sbjct: 130397 cattggtggactgcagtcaattggg 130373



 Score =  103 bits (52), Expect = 6e-19
 Identities = 58/60 (96%)
 Strand = Plus / Minus

                                                                          
Query: 181    gcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgc 240
              |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 132410 gcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggtgc 132351



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 376    agaacgtgatgctgatatgatcatggtgga 405
              ||||| ||||| ||||||||||||||||||
Sbjct: 131383 agaacctgatgttgatatgatcatggtgga 131354



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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBb0061B07
          Length = 124766

 Score =  145 bits (73), Expect = 2e-31
 Identities = 118/133 (88%)
 Strand = Plus / Minus

                                                                        
Query: 245  gagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttgat 304
            |||||||||||||||||||| ||||||||||||||||||||||| |||||  ||||||||
Sbjct: 1600 gagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagcttttgat 1541

                                                                        
Query: 305  tatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatctttac 364
            | |||||| ||||| |||||  ||||| |||| || ||||| |||||||||||||| |||
Sbjct: 1540 tttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagatctgtac 1481

                         
Query: 365  agcagatacaaag 377
            | |||||||||||
Sbjct: 1480 aacagatacaaag 1468



 Score =  145 bits (73), Expect = 2e-31
 Identities = 82/85 (96%)
 Strand = Plus / Minus

                                                                       
Query: 460 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgtcaggaatt 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 359 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgccaggaatt 300

                                    
Query: 520 cattgatggtctgcagtcaattggg 544
           ||||| ||| |||||||||||||||
Sbjct: 299 cattggtggactgcagtcaattggg 275



 Score =  103 bits (52), Expect = 6e-19
 Identities = 58/60 (96%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgc 240
            |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 2312 gcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggtgc 2253



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 376  agaacgtgatgctgatatgatcatggtgga 405
            ||||| ||||| ||||||||||||||||||
Sbjct: 1285 agaacctgatgttgatatgatcatggtgga 1256



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>gb|BT014482.1| Lycopersicon esculentum clone 133834R, mRNA sequence
          Length = 1176

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 470 tcatggcacatgaaagctgccacaatgtgtgaatt 504
           |||||||||||||||||||| || |||||||||||
Sbjct: 544 tcatggcacatgaaagctgcaaccatgtgtgaatt 578



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>ref|NM_112112.2| Arabidopsis thaliana unknown protein AT3G12760 mRNA, complete cds
          Length = 1131

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 cttcaggctctgaaagctagtgattggcac 286
           ||||||||||| ||||| ||||||||||||
Sbjct: 303 cttcaggctctcaaagccagtgattggcac 332



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>gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosome 16, complete
             sequence
          Length = 199086

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 277   tgattggcacttagaagggtcttttg 302
             |||||| |||||||||||||||||||
Sbjct: 36683 tgattgacacttagaagggtcttttg 36658



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>gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome 16, complete sequence
          Length = 197096

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 277    tgattggcacttagaagggtcttttg 302
              |||||| |||||||||||||||||||
Sbjct: 169813 tgattgacacttagaagggtcttttg 169788



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>gb|AY150404.1| Arabidopsis thaliana unknown protein (At3g12760) mRNA, complete cds
          Length = 784

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 cttcaggctctgaaagctagtgattggcac 286
           ||||||||||| ||||| ||||||||||||
Sbjct: 79  cttcaggctctcaaagccagtgattggcac 108



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>gb|AY050926.1| Arabidopsis thaliana unknown protein (At3g12760) mRNA, complete cds
          Length = 1141

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 257 cttcaggctctgaaagctagtgattggcac 286
           ||||||||||| ||||| ||||||||||||
Sbjct: 303 cttcaggctctcaaagccagtgattggcac 332



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>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21
          Length = 79125

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 257   cttcaggctctgaaagctagtgattggcac 286
             ||||||||||| ||||| ||||||||||||
Sbjct: 40291 cttcaggctctcaaagccagtgattggcac 40320



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>gb|AC166081.3| Mus musculus 10 BAC RP24-184F11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 161394

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 513   aggaattcattgatggtctgcagtc 537
             ||||||| |||||||||||||||||
Sbjct: 22627 aggaatttattgatggtctgcagtc 22603



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>gb|AC153367.5| Mus musculus 10 BAC RP23-182A11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 204838

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 513   aggaattcattgatggtctgcagtc 537
             ||||||| |||||||||||||||||
Sbjct: 92894 aggaatttattgatggtctgcagtc 92918



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>ref|NM_130152.2| Arabidopsis thaliana unknown protein AT2G45890 mRNA, complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  ttctcgacatcttgaagatc 359
            ||||||||||||||||||||
Sbjct: 1059 ttctcgacatcttgaagatc 1078



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>gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, complete sequence
          Length = 188948

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ggtttctgtgacaaattctc 344
              ||||||||||||||||||||
Sbjct: 186868 ggtttctgtgacaaattctc 186887



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>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  ggtttctgtgacaaattctc 344
            ||||||||||||||||||||
Sbjct: 8515 ggtttctgtgacaaattctc 8534



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>gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complete sequence
          Length = 137446

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 348    atcttgaagatctttacagcagatacaa 375
              |||||||||||||||| | |||||||||
Sbjct: 114876 atcttgaagatctttatatcagatacaa 114903



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>emb|AL024509.1|HS522P13 Human DNA sequence from clone RP3-522P13 on chromosome 6p21.31-22.3
           Contains a 60S Ribosomal Protein L21 pseudogene, a
           heterogeneous nuclear ribonucleoprotein A3 (HNRPA3)
           (FBRNP, D10S102) pseudogene, two novel genes and a CpG
           island, complete sequence
          Length = 150024

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 tatgatcatggtggagggca 410
           ||||||||||||||||||||
Sbjct: 190 tatgatcatggtggagggca 171



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>emb|BX537251.10| Zebrafish DNA sequence from clone DKEY-249G23 in linkage group 9,
             complete sequence
          Length = 169308

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   ggagaggaagccgcgacaag 211
             ||||||||||||||||||||
Sbjct: 95006 ggagaggaagccgcgacaag 95025



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>emb|BX005457.10| Zebrafish DNA sequence from clone DKEY-216J10 in linkage group 14,
           complete sequence
          Length = 70896

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 27  cctgctccctctcgctgtca 46
           ||||||||||||||||||||
Sbjct: 757 cctgctccctctcgctgtca 738



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>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete
             sequence
          Length = 101647

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ttctcgacatcttgaagatc 359
             ||||||||||||||||||||
Sbjct: 41984 ttctcgacatcttgaagatc 41965



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>emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chromosome 2, complete
              sequence
          Length = 222104

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    aagctggggagaggaagccg 204
              ||||||||||||||||||||
Sbjct: 191551 aagctggggagaggaagccg 191532



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>emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on chromosome 2, complete
             sequence
          Length = 209013

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   aagctggggagaggaagccg 204
             ||||||||||||||||||||
Sbjct: 43144 aagctggggagaggaagccg 43125


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,199,802
Number of Sequences: 3902068
Number of extensions: 4199802
Number of successful extensions: 72526
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72442
Number of HSP's gapped (non-prelim): 82
length of query: 562
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 539
effective length of database: 17,143,297,704
effective search space: 9240237462456
effective search space used: 9240237462456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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