| Clone Name | basd27a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116N23, full insert sequence Length = 1122 Score = 436 bits (220), Expect = e-119 Identities = 340/380 (89%) Strand = Plus / Plus Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 133 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 192 Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298 || || |||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 193 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 252 Query: 299 tttgattatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagat 358 ||||||| |||||| ||||| ||||| ||||| |||| || ||||| |||||||||||| Sbjct: 253 tttgattttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagat 312 Query: 359 ctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaa 418 || |||| |||||||||||||| ||||| |||||||||||||||||| || |||||| Sbjct: 313 ctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctcag 372 Query: 419 ttctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcac 478 || |||| || || ||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 373 ttttgcactgatcttcaggtggatccccaggatattgttatgcttgtcatatcatggcac 432 Query: 479 atgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtca 538 |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| Sbjct: 433 atgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtca 492 Query: 539 attggggtagattcaattga 558 |||||||| ||||||||||| Sbjct: 493 attggggtggattcaattga 512
>dbj|AK061460.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B04, full insert sequence Length = 1173 Score = 436 bits (220), Expect = e-119 Identities = 340/380 (89%) Strand = Plus / Plus Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 164 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 223 Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298 || || |||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 224 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 283 Query: 299 tttgattatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagat 358 ||||||| |||||| ||||| ||||| ||||| |||| || ||||| |||||||||||| Sbjct: 284 tttgattttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagat 343 Query: 359 ctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaa 418 || |||| |||||||||||||| ||||| |||||||||||||||||| || |||||| Sbjct: 344 ctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctcag 403 Query: 419 ttctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcac 478 || |||| || || ||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 404 ttttgcactgatcttcaggtggatccccaggatattgttatgcttgtcatatcatggcac 463 Query: 479 atgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtca 538 |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| Sbjct: 464 atgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtca 523 Query: 539 attggggtagattcaattga 558 |||||||| ||||||||||| Sbjct: 524 attggggtggattcaattga 543
>dbj|AK098976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090L17, full insert sequence Length = 1140 Score = 428 bits (216), Expect = e-117 Identities = 339/380 (89%) Strand = Plus / Plus Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 133 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 192 Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298 || || |||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 193 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 252 Query: 299 tttgattatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagat 358 ||||||| |||||| ||||| ||||| ||||| |||| || ||||| |||||||||||| Sbjct: 253 tttgattttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagat 312 Query: 359 ctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaa 418 || |||| |||||||||||||| ||||| |||||||||||||||||| || |||||| Sbjct: 313 ctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctcag 372 Query: 419 ttctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcac 478 || |||| | || ||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 373 ttttgcactggtcttcaggtggatccccaggatattgttatgcttgtcatatcatggcac 432 Query: 479 atgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtca 538 |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| Sbjct: 433 atgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtca 492 Query: 539 attggggtagattcaattga 558 |||||||| ||||||||||| Sbjct: 493 attggggtggattcaattga 512
>dbj|AK104717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A08, full insert sequence Length = 1152 Score = 422 bits (213), Expect = e-115 Identities = 340/381 (89%), Gaps = 1/381 (0%) Strand = Plus / Plus Query: 179 atgcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggt 238 |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct: 142 atgcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggt 201 Query: 239 gcaagcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtct 298 || || |||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 202 gcgagtgagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagct 261 Query: 299 tttga-ttatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaaga 357 ||||| || |||||| ||||| ||||| ||||| |||| || ||||| ||||||||||| Sbjct: 262 tttgatttttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaaga 321 Query: 358 tctttacagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctca 417 ||| |||| |||||||||||||| ||||| |||||||||||||||||| || |||||| Sbjct: 322 tctgtacaacagatacaaagaacctgatgttgatatgatcatggtggaaggtgtatctca 381 Query: 418 attctgcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggca 477 || |||| || || ||||||||| |||||||| || |||||||||||||||||||| Sbjct: 382 gttttgcactgatcttcaggtggatccccaggatattgttatgcttgtcatatcatggca 441 Query: 478 catgaaagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtc 537 ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| Sbjct: 442 catgaaagctgccacaatgtgtgaatttactcgccaggaattcattggtggactgcagtc 501 Query: 538 aattggggtagattcaattga 558 ||||||||| ||||||||||| Sbjct: 502 aattggggtggattcaattga 522
>gb|BT016760.1| Zea mays clone Contig593 mRNA sequence Length = 1168 Score = 412 bits (208), Expect = e-112 Identities = 337/380 (88%) Strand = Plus / Plus Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242 |||||||||||||||||| ||||||||||||||| ||||||||| |||| || || || | Sbjct: 161 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccattaccggcgcca 220 Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302 | |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 221 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 280 Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362 | | ||||||||||| || |||||||||||| ||| |||| |||||||||||| ||| Sbjct: 281 acttcttctatagccaacctcaggtttctgtggtcaatactcggcatcttgaagatattt 340 Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422 || |||||| ||||||| ||||||||||||||| |||||||| || | ||||||||| | Sbjct: 341 tcaacagatataaagaacctgatgctgatatgataatggtggaaggaatatctcaatttt 400 Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482 |||| || ||| ||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 401 gcaatgatctgcaggttgatcctcaggatattgtcatgcttgtcatatcatggcacatga 460 Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542 |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 461 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcagtcaattg 520 Query: 543 gggtagattcaattgagaag 562 ||||||||||||| |||||| Sbjct: 521 gggtagattcaatcgagaag 540
>gb|AY596526.1| Saccharum officinarum clone SCCCLR1024D04, complete sequence Length = 1375 Score = 404 bits (204), Expect = e-109 Identities = 336/380 (88%) Strand = Plus / Plus Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242 |||||||||||||||||| ||||||||||||||| ||||||||| ||||||| || || | Sbjct: 207 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccataaccggcgcca 266 Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302 | |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 267 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 326 Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362 | | ||||||||||| || ||| |||||| | ||| |||| |||||||||||| ||| Sbjct: 327 acttcttctatagccaacctcagatttctgcggtcaatactcggcatcttgaagatattt 386 Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422 || |||||| ||||||| ||||| |||||||||||||||||| || | ||||||| | | Sbjct: 387 tcaacagatataaagaacctgatggtgatatgatcatggtggaaggaatatctcaacttt 446 Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482 |||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 447 gcaatgatctgcaggtggatcctcaggatattgtcatgcttgtcatatcatggcacatga 506 Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542 |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 507 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcagtcaattg 566 Query: 543 gggtagattcaattgagaag 562 ||||||||||||| |||||| Sbjct: 567 gggtagattcaatcgagaag 586
>gb|AY105223.1| Zea mays PCO063855 mRNA sequence Length = 1286 Score = 404 bits (204), Expect = e-109 Identities = 336/380 (88%) Strand = Plus / Plus Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242 |||||||||||||||||| ||||||||||||||| ||||||||| |||| || || || | Sbjct: 255 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccattaccggcgcca 314 Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302 | |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 315 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 374 Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362 | | ||||||||||| || |||||||||||| ||| |||| |||||||||||| ||| Sbjct: 375 acttcttctatagccaacctcaggtttctgtggtcaatactcggcatcttgaagatattt 434 Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422 || |||||| ||||||| ||||||||||||||| |||||||| || | ||||||||| | Sbjct: 435 tcaacagatataaagaacctgatgctgatatgataatggtggaaggaatatctcaatttt 494 Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482 |||| || ||| ||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 495 gcaatgatctgcaggttgatcctcaggatattgtcatgcttgtcatatcatggcacatga 554 Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542 |||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| Sbjct: 555 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcaatcaattg 614 Query: 543 gggtagattcaattgagaag 562 ||||||||||||| |||||| Sbjct: 615 gggtagattcaatcgagaag 634
>gb|BT017398.1| Zea mays clone EL01N0328F07.c mRNA sequence Length = 1183 Score = 396 bits (200), Expect = e-107 Identities = 335/380 (88%) Strand = Plus / Plus Query: 183 ataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgcaa 242 |||||||||||||||||| ||||||||||||||| ||||||||| |||| || || || | Sbjct: 131 ataagctggggagaggaaaccgcgacaaggtgcagcagttcatgaccattaccggcgcca 190 Query: 243 gcgagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttg 302 | |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 191 gtgagaaggttgcccttcaggcactgaaagctagtgattggcacttggaaggagcttttg 250 Query: 303 attatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatcttt 362 | | ||||||||||| || |||||||||||| ||| |||| |||||||||||| ||| Sbjct: 251 acttcttctatagccaacctcaggtttctgtggtcaatactcggcatcttgaagatattt 310 Query: 363 acagcagatacaaagaacgtgatgctgatatgatcatggtggagggcacatctcaattct 422 || |||||| ||||||| ||||||||||||||| |||||||| || | ||||||||| | Sbjct: 311 tcaacagatataaagaacctgatgctgatatgataatggtggaaggaatatctcaatttt 370 Query: 423 gcaacgacctgttggtggatcctcaggatatcgtcatgcttgtcatatcatggcacatga 482 || || ||| ||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 371 gcggtgatctgcaggttgatcctcaggatattgtcatgcttgtcatatcatggcacatga 430 Query: 483 aagctgccacaatgtgtgaatttactcgtcaggaattcattgatggtctgcagtcaattg 542 |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 431 aagccgccacaatgtgtgaatttactcgtcaggaattcattggtggactgcagtcaattg 490 Query: 543 gggtagattcaattgagaag 562 ||||||||||||| |||||| Sbjct: 491 gggtagattcaatcgagaag 510
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 245 gagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttgat 304 |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 6942173 gagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagcttttgat 6942114 Query: 305 tatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatctttac 364 | |||||| ||||| ||||| ||||| |||| || ||||| |||||||||||||| ||| Sbjct: 6942113 tttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagatctgtac 6942054 Query: 365 agcagatacaaag 377 | ||||||||||| Sbjct: 6942053 aacagatacaaag 6942041 Score = 145 bits (73), Expect = 2e-31 Identities = 82/85 (96%) Strand = Plus / Minus Query: 460 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgtcaggaatt 519 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 6940932 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgccaggaatt 6940873 Query: 520 cattgatggtctgcagtcaattggg 544 ||||| ||| ||||||||||||||| Sbjct: 6940872 cattggtggactgcagtcaattggg 6940848 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 181 gcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgc 240 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 6942885 gcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggtgc 6942826 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 376 agaacgtgatgctgatatgatcatggtgga 405 ||||| ||||| |||||||||||||||||| Sbjct: 6941858 agaacctgatgttgatatgatcatggtgga 6941829
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 245 gagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttgat 304 |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 131698 gagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagcttttgat 131639 Query: 305 tatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatctttac 364 | |||||| ||||| ||||| ||||| |||| || ||||| |||||||||||||| ||| Sbjct: 131638 tttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagatctgtac 131579 Query: 365 agcagatacaaag 377 | ||||||||||| Sbjct: 131578 aacagatacaaag 131566 Score = 145 bits (73), Expect = 2e-31 Identities = 82/85 (96%) Strand = Plus / Minus Query: 460 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgtcaggaatt 519 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 130457 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgccaggaatt 130398 Query: 520 cattgatggtctgcagtcaattggg 544 ||||| ||| ||||||||||||||| Sbjct: 130397 cattggtggactgcagtcaattggg 130373 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 181 gcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgc 240 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 132410 gcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggtgc 132351 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 376 agaacgtgatgctgatatgatcatggtgga 405 ||||| ||||| |||||||||||||||||| Sbjct: 131383 agaacctgatgttgatatgatcatggtgga 131354
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 145 bits (73), Expect = 2e-31 Identities = 118/133 (88%) Strand = Plus / Minus Query: 245 gagaaggtcgcccttcaggctctgaaagctagtgattggcacttagaagggtcttttgat 304 |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| Sbjct: 1600 gagaaggtcgcccttcaggccctgaaagctagtgattggcacttggaaggagcttttgat 1541 Query: 305 tatttctatagccagccacaggtttctgtgacaaattctcgacatcttgaagatctttac 364 | |||||| ||||| ||||| ||||| |||| || ||||| |||||||||||||| ||| Sbjct: 1540 tttttctacagccaaccacaaatttctctgacgaactctcggcatcttgaagatctgtac 1481 Query: 365 agcagatacaaag 377 | ||||||||||| Sbjct: 1480 aacagatacaaag 1468 Score = 145 bits (73), Expect = 2e-31 Identities = 82/85 (96%) Strand = Plus / Minus Query: 460 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgtcaggaatt 519 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 359 gcttgtcatatcatggcacatgaaagctgccacaatgtgtgaatttactcgccaggaatt 300 Query: 520 cattgatggtctgcagtcaattggg 544 ||||| ||| ||||||||||||||| Sbjct: 299 cattggtggactgcagtcaattggg 275 Score = 103 bits (52), Expect = 6e-19 Identities = 58/60 (96%) Strand = Plus / Minus Query: 181 gcataagctggggagaggaagccgcgacaaggtgcaacagttcatgtccataactggtgc 240 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 2312 gcataagctggggagaggaagccgcgacaaggtgcagcagttcatgaccataactggtgc 2253 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Minus Query: 376 agaacgtgatgctgatatgatcatggtgga 405 ||||| ||||| |||||||||||||||||| Sbjct: 1285 agaacctgatgttgatatgatcatggtgga 1256
>gb|BT014482.1| Lycopersicon esculentum clone 133834R, mRNA sequence Length = 1176 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 470 tcatggcacatgaaagctgccacaatgtgtgaatt 504 |||||||||||||||||||| || ||||||||||| Sbjct: 544 tcatggcacatgaaagctgcaaccatgtgtgaatt 578
>ref|NM_112112.2| Arabidopsis thaliana unknown protein AT3G12760 mRNA, complete cds Length = 1131 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 257 cttcaggctctgaaagctagtgattggcac 286 ||||||||||| ||||| |||||||||||| Sbjct: 303 cttcaggctctcaaagccagtgattggcac 332
>gb|AC161376.2| Mus musculus BAC clone RP23-264M10 from chromosome 16, complete sequence Length = 199086 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 277 tgattggcacttagaagggtcttttg 302 |||||| ||||||||||||||||||| Sbjct: 36683 tgattgacacttagaagggtcttttg 36658
>gb|AC126055.4| Mus musculus BAC clone RP23-368O6 from chromosome 16, complete sequence Length = 197096 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 277 tgattggcacttagaagggtcttttg 302 |||||| ||||||||||||||||||| Sbjct: 169813 tgattgacacttagaagggtcttttg 169788
>gb|AY150404.1| Arabidopsis thaliana unknown protein (At3g12760) mRNA, complete cds Length = 784 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 257 cttcaggctctgaaagctagtgattggcac 286 ||||||||||| ||||| |||||||||||| Sbjct: 79 cttcaggctctcaaagccagtgattggcac 108
>gb|AY050926.1| Arabidopsis thaliana unknown protein (At3g12760) mRNA, complete cds Length = 1141 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 257 cttcaggctctgaaagctagtgattggcac 286 ||||||||||| ||||| |||||||||||| Sbjct: 303 cttcaggctctcaaagccagtgattggcac 332
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21 Length = 79125 Score = 44.1 bits (22), Expect = 0.49 Identities = 28/30 (93%) Strand = Plus / Plus Query: 257 cttcaggctctgaaagctagtgattggcac 286 ||||||||||| ||||| |||||||||||| Sbjct: 40291 cttcaggctctcaaagccagtgattggcac 40320
>gb|AC166081.3| Mus musculus 10 BAC RP24-184F11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161394 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 513 aggaattcattgatggtctgcagtc 537 ||||||| ||||||||||||||||| Sbjct: 22627 aggaatttattgatggtctgcagtc 22603
>gb|AC153367.5| Mus musculus 10 BAC RP23-182A11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204838 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 513 aggaattcattgatggtctgcagtc 537 ||||||| ||||||||||||||||| Sbjct: 92894 aggaatttattgatggtctgcagtc 92918
>ref|NM_130152.2| Arabidopsis thaliana unknown protein AT2G45890 mRNA, complete cds Length = 1585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 ttctcgacatcttgaagatc 359 |||||||||||||||||||| Sbjct: 1059 ttctcgacatcttgaagatc 1078
>gb|AC125448.16| Mus musculus chromosome 10, clone RP23-122D10, complete sequence Length = 188948 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ggtttctgtgacaaattctc 344 |||||||||||||||||||| Sbjct: 186868 ggtttctgtgacaaattctc 186887
>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 241022 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ggtttctgtgacaaattctc 344 |||||||||||||||||||| Sbjct: 8515 ggtttctgtgacaaattctc 8534
>gb|AC092585.2| Homo sapiens BAC clone RP11-20L17 from 7, complete sequence Length = 137446 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 348 atcttgaagatctttacagcagatacaa 375 |||||||||||||||| | ||||||||| Sbjct: 114876 atcttgaagatctttatatcagatacaa 114903
>emb|AL024509.1|HS522P13 Human DNA sequence from clone RP3-522P13 on chromosome 6p21.31-22.3 Contains a 60S Ribosomal Protein L21 pseudogene, a heterogeneous nuclear ribonucleoprotein A3 (HNRPA3) (FBRNP, D10S102) pseudogene, two novel genes and a CpG island, complete sequence Length = 150024 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tatgatcatggtggagggca 410 |||||||||||||||||||| Sbjct: 190 tatgatcatggtggagggca 171
>emb|BX537251.10| Zebrafish DNA sequence from clone DKEY-249G23 in linkage group 9, complete sequence Length = 169308 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ggagaggaagccgcgacaag 211 |||||||||||||||||||| Sbjct: 95006 ggagaggaagccgcgacaag 95025
>emb|BX005457.10| Zebrafish DNA sequence from clone DKEY-216J10 in linkage group 14, complete sequence Length = 70896 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cctgctccctctcgctgtca 46 |||||||||||||||||||| Sbjct: 757 cctgctccctctcgctgtca 738
>gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I18 map CIC02E07, complete sequence Length = 101647 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgacatcttgaagatc 359 |||||||||||||||||||| Sbjct: 41984 ttctcgacatcttgaagatc 41965
>emb|AL929254.12| Mouse DNA sequence from clone RP23-456I1 on chromosome 2, complete sequence Length = 222104 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aagctggggagaggaagccg 204 |||||||||||||||||||| Sbjct: 191551 aagctggggagaggaagccg 191532
>emb|AL844846.11| Mouse DNA sequence from clone RP23-358I19 on chromosome 2, complete sequence Length = 209013 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 aagctggggagaggaagccg 204 |||||||||||||||||||| Sbjct: 43144 aagctggggagaggaagccg 43125 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,199,802 Number of Sequences: 3902068 Number of extensions: 4199802 Number of successful extensions: 72526 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72442 Number of HSP's gapped (non-prelim): 82 length of query: 562 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 539 effective length of database: 17,143,297,704 effective search space: 9240237462456 effective search space used: 9240237462456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)