ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd27a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009581.1| Triticum aestivum clone wre1n.pk0041.e8:fis, full... 496 e-137
2ref|XM_463047.1| Oryza sativa (japonica cultivar-group), mRNA 133 6e-28
3ref|XM_463048.3| Oryza sativa (japonica cultivar-group), mRNA 133 6e-28
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 133 6e-28
5gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 133 6e-28
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 133 6e-28
7dbj|AK120119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
8dbj|AK070707.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
9dbj|AK058458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 6e-28
10gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.7
11ref|XM_508712.1| PREDICTED: Pan troglodytes similar to contactin... 40 6.9
12ref|NM_175566.1| Homo sapiens contactin 5 (CNTN5), transcript va... 40 6.9
13ref|NM_014361.2| Homo sapiens contactin 5 (CNTN5), transcript va... 40 6.9
14gb|AC159197.3| Mus musculus BAC clone RP23-421P10 from chromosom... 40 6.9
15gb|AY217131.1| Taeniopygia guttata chromo-helicase DNA-binding p... 40 6.9
16ref|XM_542227.2| PREDICTED: Canis familiaris similar to Contacti... 40 6.9
17gb|BC039255.1| Homo sapiens contactin 5, mRNA (cDNA clone MGC:33... 40 6.9
18emb|AL592215.12| Mouse DNA sequence from clone RP23-172P19 on ch... 40 6.9
19gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.9
20dbj|AK021026.1| Mus musculus 4 days neonate male adipose cDNA, R... 40 6.9
21gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complet... 40 6.9
22gb|AE004452.1| Pseudomonas aeruginosa PAO1, section 13 of 529 of... 40 6.9
23dbj|AP003126.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.9
24gb|AC157663.2| Gallus gallus BAC clone CH261-38B6 from chromosom... 40 6.9
25emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chro... 40 6.9
26dbj|AB013803.2| Homo sapiens mRNA for hNB-2s, complete cds 40 6.9
27dbj|AB013802.2| Homo sapiens mRNA for hNB-2, complete cds 40 6.9 
>gb|BT009581.1| Triticum aestivum clone wre1n.pk0041.e8:fis, full insert mRNA
           sequence
          Length = 1109

 Score =  496 bits (250), Expect = e-137
 Identities = 420/476 (88%), Gaps = 3/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggcgtgagctcggctactaccggccaaaccacaagggcgtccagtgggcaggccaggtgc 61
           |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct: 452 ggcgtgagctcggctacttccggccaaaccacaagggcgtccaatgggcaggcccggtgc 511

                                                                       
Query: 62  tcccccatactctaccggtaaagccggatgttgggccagctcatgtctctcgcgaaagag 121
           ||||  ||||||||||| | ||||| ||||| || |||| ||| ||  |||| |||||||
Sbjct: 512 tccctgatactctaccgatgaagccagatgtgggcccagttcacgttcctcgtgaaagag 571

                                                                       
Query: 122 gcgccaccatggttggagctacacctttcgtggacaattacaatgtgccgatattctgca 181
           ||||||||||||| ||||||  |||||| || || |  ||||||||||||||||||||||
Sbjct: 572 gcgccaccatggtcggagctcaacctttggtcgagagctacaatgtgccgatattctgca 631

                                                                       
Query: 182 aggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctcc 241
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aggatgtcccaaccgtgagaagaatcacccggagggtgactggacggagcggagggctcc 691

                                                                       
Query: 242 caacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtg---ct 298
           |  | |||||||| ||||| || |||||||||||||||||||||||||| || ||    |
Sbjct: 692 cgtcagtacaggcacttgcacttttccatggcgacaattgcacggagatcgcatgttttt 751

                                                                       
Query: 299 tgctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcag 358
           ||||||||||||| || ||||| ||||||| |||||| |||||||| |||||||||||||
Sbjct: 752 tgctggatccagaccacgtcggcgccgatcgggttcaatggctggtggagcagattgcag 811

                                                                       
Query: 359 aagagcaagggcttgaggttgacaagggctatttcaccgacctgtccaaggatatgatgc 418
           | |||||||||||||| ||||| |||||||||||||| |||||||| ||| |||||||||
Sbjct: 812 aggagcaagggcttgaagttgaaaagggctatttcactgacctgtcaaagcatatgatgc 871

                                                                   
Query: 419 tggaacggtacttcgagatgatttctgcagctgattgacatgaccacaattttctt 474
           | ||| |||||| ||||||| ||||||||||||| ||||||| | ||| |||||||
Sbjct: 872 tagaaaggtactccgagatggtttctgcagctgactgacatgtcaacagttttctt 927



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 476  ttgtaatcatgcatgtctgcacttccatgtatgct 510
            |||||| |||||||||||||||||||||| |||||
Sbjct: 977  ttgtaaacatgcatgtctgcacttccatggatgct 1011
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>ref|XM_463047.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1284

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
           |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 730 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 789

                                                                       
Query: 241 ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
           || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 790 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 849

                                                                       
Query: 301 ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
           |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 850 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 909

                                              
Query: 361 gagcaagggcttgaggttgacaagggctatttcac 395
           |||||||| ||||||||||| ||||| || |||||
Sbjct: 910 gagcaaggacttgaggttgaaaaggggtacttcac 944
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>ref|XM_463048.3| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1739

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                        
Query: 181  aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
            |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 1357 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 1416

                                                                        
Query: 241  ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
            || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 1417 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 1476

                                                                        
Query: 301  ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
            |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 1477 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 1536

                                               
Query: 361  gagcaagggcttgaggttgacaagggctatttcac 395
            |||||||| ||||||||||| ||||| || |||||
Sbjct: 1537 gagcaaggacttgaggttgaaaaggggtacttcac 1571
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                            
Query: 181      aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
                |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 21202213 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 21202272

                                                                            
Query: 241      ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
                || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 21202273 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 21202332

                                                                            
Query: 301      ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
                |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 21202333 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 21202392

                                                   
Query: 361      gagcaagggcttgaggttgacaagggctatttcac 395
                |||||||| ||||||||||| ||||| || |||||
Sbjct: 21202393 gagcaaggacttgaggttgaaaaggggtacttcac 21202427
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>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
             sequence
          Length = 174910

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                         
Query: 181   aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
             |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 58128 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 58187

                                                                         
Query: 241   ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
             || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 58188 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 58247

                                                                         
Query: 301   ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
             |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 58248 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 58307

                                                
Query: 361   gagcaagggcttgaggttgacaagggctatttcac 395
             |||||||| ||||||||||| ||||| || |||||
Sbjct: 58308 gagcaaggacttgaggttgaaaaggggtacttcac 58342
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                            
Query: 181      aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
                |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 21195242 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 21195301

                                                                            
Query: 241      ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
                || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 21195302 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 21195361

                                                                            
Query: 301      ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
                |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 21195362 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 21195421

                                                   
Query: 361      gagcaagggcttgaggttgacaagggctatttcac 395
                |||||||| ||||||||||| ||||| || |||||
Sbjct: 21195422 gagcaaggacttgaggttgaaaaggggtacttcac 21195456
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>dbj|AK120119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025N19, full
           insert sequence
          Length = 1284

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
           |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 730 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 789

                                                                       
Query: 241 ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
           || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 790 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 849

                                                                       
Query: 301 ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
           |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 850 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 909

                                              
Query: 361 gagcaagggcttgaggttgacaagggctatttcac 395
           |||||||| ||||||||||| ||||| || |||||
Sbjct: 910 gagcaaggacttgaggttgaaaaggggtacttcac 944
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>dbj|AK070707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063J02, full
            insert sequence
          Length = 1745

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                        
Query: 181  aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
            |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 1363 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 1422

                                                                        
Query: 241  ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
            || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 1423 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 1482

                                                                        
Query: 301  ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
            |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 1483 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 1542

                                               
Query: 361  gagcaagggcttgaggttgacaagggctatttcac 395
            |||||||| ||||||||||| ||||| || |||||
Sbjct: 1543 gagcaaggacttgaggttgaaaaggggtacttcac 1577
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>dbj|AK058458.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H11, full
           insert sequence
          Length = 562

 Score =  133 bits (67), Expect = 6e-28
 Identities = 178/215 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aaggatgtcccgaccgtgagaagaatcacccggagggtgactggacggagcggagggctc 240
           |||||| |||| ||| | ||||| |||||||| ||||||||||| ||  | ||||| |||
Sbjct: 180 aaggatatcccaaccataagaaggatcacccgaagggtgactggtcgtggtggaggactc 239

                                                                       
Query: 241 ccaacggtacaggcgcttgctctcttccatggcgacaattgcacggagattgcgtgcttg 300
           || || || || |||||||| || | |||||| ||  | ||||| |||||||| ||||| 
Sbjct: 240 ccgacagtgcaagcgcttgccctttcccatggtgatgactgcacagagattgcatgcttc 299

                                                                       
Query: 301 ctggatccagatcatgtcggtgccgatcaggttcagtggctggttgagcagattgcagaa 360
           |||||||||||||||||| |||||||||||||||||  || ||| || ||||| |||| |
Sbjct: 300 ctggatccagatcatgtcagtgccgatcaggttcagcagcaggtggaacagatagcagca 359

                                              
Query: 361 gagcaagggcttgaggttgacaagggctatttcac 395
           |||||||| ||||||||||| ||||| || |||||
Sbjct: 360 gagcaaggacttgaggttgaaaaggggtacttcac 394
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 399    cctgtccaaggatatgatgctggaa 423
              |||||||||||| ||||||||||||
Sbjct: 761023 cctgtccaaggagatgatgctggaa 760999
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>ref|XM_508712.1| PREDICTED: Pan troglodytes similar to contactin 5 isoform short;
           neural adhesion molecule (LOC451500), mRNA
          Length = 2628

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 145 cctttcgtggacaattacaa 164
           ||||||||||||||||||||
Sbjct: 218 cctttcgtggacaattacaa 237
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>ref|NM_175566.1| Homo sapiens contactin 5 (CNTN5), transcript variant 2, mRNA
          Length = 3942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctttcgtggacaattacaa 164
            ||||||||||||||||||||
Sbjct: 1253 cctttcgtggacaattacaa 1272
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>ref|NM_014361.2| Homo sapiens contactin 5 (CNTN5), transcript variant 1, mRNA
          Length = 4164

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctttcgtggacaattacaa 164
            ||||||||||||||||||||
Sbjct: 1475 cctttcgtggacaattacaa 1494
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>gb|AC159197.3| Mus musculus BAC clone RP23-421P10 from chromosome 12, complete sequence
          Length = 188400

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    aagggcttgaggttgacaag 384
              ||||||||||||||||||||
Sbjct: 144763 aagggcttgaggttgacaag 144744
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>gb|AY217131.1| Taeniopygia guttata chromo-helicase DNA-binding protein (CHD1Z) mRNA,
            complete cds
          Length = 6951

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  gatattctgcaaggatgtcc 190
            ||||||||||||||||||||
Sbjct: 2626 gatattctgcaaggatgtcc 2607
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>ref|XM_542227.2| PREDICTED: Canis familiaris similar to Contactin 5 precursor (Neural
            recognition molecule NB-2) (hNB-2) (LOC485109), mRNA
          Length = 3438

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctttcgtggacaattacaa 164
            ||||||||||||||||||||
Sbjct: 1271 cctttcgtggacaattacaa 1290
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>gb|BC039255.1| Homo sapiens contactin 5, mRNA (cDNA clone MGC:33755 IMAGE:5273769),
            complete cds
          Length = 4327

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctttcgtggacaattacaa 164
            ||||||||||||||||||||
Sbjct: 1475 cctttcgtggacaattacaa 1494
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>emb|AL592215.12| Mouse DNA sequence from clone RP23-172P19 on chromosome 11 Contains two
              novel genes (4930452L02Rik and B430319H21Rik), the 3' end
              of the gene for a novel protein (1700019I23Rik), the gene
              for a novel protein (4933407G07Rik), the Pmp22 gene for
              peripheral myelin protein and a CpG island, complete
              sequence
          Length = 219468

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    gcagaagagcaagggcttga 374
              ||||||||||||||||||||
Sbjct: 197999 gcagaagagcaagggcttga 197980
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 399    cctgtccaaggatatgatgctgga 422
              |||||||||||| |||||||||||
Sbjct: 161839 cctgtccaaggaaatgatgctgga 161862
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>dbj|AK021026.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
           enriched library, clone:B430319H21 product:hypothetical
           protein, full insert sequence
          Length = 737

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 gcagaagagcaagggcttga 374
           ||||||||||||||||||||
Sbjct: 76  gcagaagagcaagggcttga 57
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>gb|AC093744.2| Homo sapiens BAC clone RP11-25B14 from 4, complete sequence
          Length = 188914

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    accacaattttcttattgta 480
              ||||||||||||||||||||
Sbjct: 132190 accacaattttcttattgta 132209
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>gb|AE004452.1| Pseudomonas aeruginosa PAO1, section 13 of 529 of the complete genome
          Length = 10104

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  ccagatcatgtcggtgccga 326
            ||||||||||||||||||||
Sbjct: 1315 ccagatcatgtcggtgccga 1334
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>dbj|AP003126.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-684F2, complete
             sequence
          Length = 183583

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   cctttcgtggacaattacaa 164
             ||||||||||||||||||||
Sbjct: 50308 cctttcgtggacaattacaa 50327
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>gb|AC157663.2| Gallus gallus BAC clone CH261-38B6 from chromosome unknown, complete
              sequence
          Length = 176280

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    ggacggagcggagggctccc 242
              ||||||||||||||||||||
Sbjct: 119969 ggacggagcggagggctccc 119988
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>emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chromosome 15, complete
              sequence
          Length = 220050

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 354    tgcagaagagcaagggcttg 373
              ||||||||||||||||||||
Sbjct: 199677 tgcagaagagcaagggcttg 199658
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>dbj|AB013803.2| Homo sapiens mRNA for hNB-2s, complete cds
          Length = 3682

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctttcgtggacaattacaa 164
            ||||||||||||||||||||
Sbjct: 993  cctttcgtggacaattacaa 1012
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>dbj|AB013802.2| Homo sapiens mRNA for hNB-2, complete cds
          Length = 3904

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 145  cctttcgtggacaattacaa 164
            ||||||||||||||||||||
Sbjct: 1215 cctttcgtggacaattacaa 1234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,554,079
Number of Sequences: 3902068
Number of extensions: 3554079
Number of successful extensions: 60315
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60191
Number of HSP's gapped (non-prelim): 123
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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