Clone Name	basd26k12
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_463252.1| Oryza sativa (japonica cultivar-group), mRNA	246	5e-62
2	gb|BT018024.1| Zea mays clone EL01N0529F02.c mRNA sequence	230	3e-57
3	dbj|AK106686.1| Oryza sativa (japonica cultivar-group) cDNA clon...	198	1e-47
4	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	180	2e-42
5	gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genom...	180	2e-42
6	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	180	2e-42
7	ref|NM_118074.1| Arabidopsis thaliana unknown protein AT4G19540 ...	72	2e-09
8	gb|AY085137.1| Arabidopsis thaliana clone 13295 mRNA, complete s...	72	2e-09
9	emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, ...	62	2e-06
10	emb|AL021768.1|ATF24J7 Arabidopsis thaliana DNA chromosome 4, BA...	62	2e-06
11	dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...	60	6e-06
12	emb|CR685323.2|CNS0FRQV Tetraodon nigroviridis full-length cDNA	58	2e-05
13	emb|CR681871.2|CNS0FP2Z Tetraodon nigroviridis full-length cDNA	58	2e-05
14	emb|CR647266.2|CNS0EYEG Tetraodon nigroviridis full-length cDNA	58	2e-05
15	gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge...	58	2e-05
16	gb|CP000133.1| Rhizobium etli CFN 42, complete genome	56	9e-05
17	gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome	56	9e-05
18	gb|DQ118108.1| Sorghum bicolor plastid division regulator MinD m...	54	4e-04
19	emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete ch...	52	0.001
20	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	52	0.001
21	gb|CP000009.1| Gluconobacter oxydans 621H, complete genome	52	0.001
22	gb|CP000284.1| Methylobacillus flagellatus KT, complete genome	50	0.006
23	emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome	50	0.006
24	gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome	48	0.023
25	gb|AE009786.1|AE009786 Pyrobaculum aerophilum strain IM2 section...	48	0.023
26	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	48	0.023
27	gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c...	48	0.023
28	emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ...	46	0.089
29	ref|XM_723566.1| Plasmodium yoelii yoelii str. 17XNL polysacchar...	46	0.089
30	gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome	46	0.089
31	gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome	46	0.089
32	gb|AE004769.1| Pseudomonas aeruginosa PAO1, section 330 of 529 o...	46	0.089
33	emb|Z54207.1|HSNIFHDK H.seropedicae nifD, nifH and nifK genes	44	0.35
34	gb|AE011913.1| Xanthomonas axonopodis pv. citri str. 306, secti...	44	0.35
35	dbj|AB196476.1| Herbaspirillum sp. B501 nifH, nifD genes for nit...	44	0.35
36	gb|DQ073946.1| Herbaspirillum seropedicae strain S23 nitrogenase...	44	0.35
37	dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...	44	0.35
38	gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome	44	0.35
39	ref|NM_001030326.2| Xenopus tropicalis ELAVL3 protein (ELAVL3), ...	42	1.4
40	gb|AY098590.1| Burkholderia kururiensis strain KP23 NifH gene, p...	42	1.4
41	gb|BC080177.1| Xenopus tropicalis cDNA clone IMAGE:7030070	42	1.4
42	ref|XM_421229.1| PREDICTED: Gallus gallus similar to chromosome ...	42	1.4
43	gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome	42	1.4
44	gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome	42	1.4
45	emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom...	42	1.4
46	emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen...	42	1.4
47	dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c...	42	1.4
48	gb|DQ284983.1| Rhizobium sp. NCHA22 NifH (nifH) gene, partial cds	42	1.4
49	emb|BX950795.2| Gallus gallus finished cDNA, clone ChEST716l24	42	1.4
50	emb|CR761704.2| Xenopus tropicalis finished cDNA, clone TGas116i13	42	1.4
51	gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete...	42	1.4
52	gb|U17598.1|XLU17598 Xenopus laevis ribonucleoprotein (elrC) mRN...	42	1.4
53	gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome	40	5.5
54	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	5.5
55	gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence	40	5.5
56	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	5.5
57	ref|XM_956943.1| Neurospora crassa OR74A hypothetical protein (N...	40	5.5
58	ref|XM_330941.1| Neurospora crassa OR74A hypothetical protein (N...	40	5.5
59	gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome	40	5.5
60	ref|XM_875359.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
61	ref|XM_875285.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
62	ref|XM_875214.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
63	ref|XM_865099.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
64	ref|XM_875075.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
65	ref|XM_874989.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
66	ref|XM_615488.2| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
67	ref|XM_874833.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
68	ref|XM_874743.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
69	ref|XM_874658.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
70	ref|XM_874412.1| PREDICTED: Bos taurus similar to ELAV-like prot...	40	5.5
71	gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	5.5
72	gb|AC147066.2| Pan troglodytes BAC clone RP43-164F2 from 7, comp...	40	5.5
73	gb|AC146512.2| Pan troglodytes BAC clone RP43-16E21 from 7, comp...	40	5.5
74	ref|XM_855320.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
75	ref|XM_855281.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
76	ref|XM_532585.2| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
77	ref|XM_844876.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
78	ref|XM_855179.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
79	ref|XM_855143.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
80	ref|XM_855114.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
81	ref|XM_855083.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
82	ref|XM_855040.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
83	ref|XM_855005.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
84	ref|XM_854972.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
85	ref|XM_854932.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
86	ref|XM_854894.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
87	ref|XM_854856.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
88	ref|XM_854825.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
89	ref|XM_854786.1| PREDICTED: Canis familiaris similar to HUD3, tr...	40	5.5
90	gb|AC006332.3| Homo sapiens BAC clone RP11-376O14 from 7, comple...	40	5.5
91	gb|AC146185.2| Pan troglodytes BAC clone RP43-35O6 from 7, compl...	40	5.5
92	emb|AL592182.6| Human DNA sequence from clone RP11-567C20 on chr...	40	5.5
93	ref|NM_021952.2| Homo sapiens ELAV (embryonic lethal, abnormal v...	40	5.5
94	emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2	40	5.5
95	gb|BC036071.1| Homo sapiens ELAV (embryonic lethal, abnormal vis...	40	5.5
96	emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra...	40	5.5
97	emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence	40	5.5
98	gb|AY033998.1| Homo sapiens HUDPRO1 mRNA, complete cds	40	5.5
99	gb|AY033997.1| Homo sapiens HUD1 mRNA, complete cds	40	5.5
100	gb|AY033996.1| Homo sapiens HUD4 mRNA, complete cds	40	5.5
101	gb|AY033995.1| Homo sapiens HUD3 mRNA, complete cds	40	5.5
102	emb|CR625475.1| full-length cDNA clone CS0DD001YC24 of Neuroblas...	40	5.5
103	emb|CR613627.1| full-length cDNA clone CS0DD003YD17 of Neuroblas...	40	5.5
104	emb|CR595508.1| full-length cDNA clone CS0DC005YB08 of Neuroblas...	40	5.5
105	gb|AE012506.1| Xanthomonas campestris pv. campestris str. ATCC 3...	40	5.5
106	gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ...	40	5.5
107	gb|AE002098.2| Neisseria meningitidis MC58, complete genome	40	5.5
108	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	40	5.5
109	gb|AE009622.1| Brucella melitensis 16M chromosome I, section 179...	40	5.5
110	dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.5
111	gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I...	40	5.5
112	dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic D...	40	5.5
113	gb|AE005043.1| Halobacterium sp. NRC-1 section 74 of 170 of the ...	40	5.5
114	emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple...	40	5.5
115	gb|AC155274.2| Mus musculus BAC clone RP23-55F17 from 12, comple...	40	5.5
116	gb|U62986.1|PFU62986 Pseudomonas fragi cold acclimation protein ...	40	5.5
117	gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome	40	5.5
118	emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I,...	40	5.5
119	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	5.5
120	gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome	40	5.5
121	gb|M62843.1|HUMBRAINPR Human brain protein recognized by the ser...	40	5.5

---

>ref|XM_463252.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 879

 Score =  246 bits (124), Expect = 5e-62
 Identities = 189/212 (89%), Gaps = 8/212 (3%)
 Strand = Plus / Plus

                                                                       
Query: 209 atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
           |||||||||||||||||||| ||| ||||||| | ||| |||||||| ||||||||||| 
Sbjct: 274 atgaggatgattccagttgacaactatggagtacaatgcatgtccattgggtttcttgtt 333

                                                                       
Query: 269 gacaaagatgcaccaatcgtttggagaggt--------aatgagtgctcttgagaagatg 320
           ||||||||||||||||| ||||||||||||        ||||||||||||||||||||| 
Sbjct: 334 gacaaagatgcaccaattgtttggagaggtcctatggtaatgagtgctcttgagaagatt 393

                                                                       
Query: 321 acaaggggagtagcctggggtaatctggatgttcttgttgntgatatgccccccggcact 380
           |||||||| ||||||||||||||||| ||| ||||||||| |||||||||||| ||||||
Sbjct: 394 acaaggggggtagcctggggtaatcttgatattcttgttgttgatatgcccccgggcact 453

                                           
Query: 381 ggtgatgctcaactatcaatgtcccaaaggct 412
           ||||||||||| ||||||||||||||||||||
Sbjct: 454 ggtgatgctcagctatcaatgtcccaaaggct 485



 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39  gacatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgcagttaac 98
           |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 94  gacatcatcgccgtcgcctccgggaaaggcggcgtcggcaagtccaccactgcagttaac 153

                                                                       
Query: 99  attgctgtagcacttgcgaaggagtttaagctcaaggttggtttgctagatgctgatata 158
           ||||||||||||||||| ||| ||||| |||| ||||||||| || ||||||| || |||
Sbjct: 154 attgctgtagcacttgccaagaagtttcagcttaaggttggtctgttagatgccgacata 213

                                                           
Query: 159 tatgggccatccattcccacaatgatgcatctgcatgaaaagcctgaa 206
           ||||| |||||||| |||||||||||| |||| |||| ||| ||||||
Sbjct: 214 tatggaccatccatacccacaatgatgaatctccatgcaaaacctgaa 261

---

>gb|BT018024.1| Zea mays clone EL01N0529F02.c mRNA sequence
          Length = 907

 Score =  230 bits (116), Expect = 3e-57
 Identities = 257/307 (83%), Gaps = 18/307 (5%)
 Strand = Plus / Plus

                                                                       
Query: 124 ttaagctcaaggttggtttgctagatgctgatatatatgggccatccattcccacaatga 183
           |||||||  |||||||||||||||||||||   | ||||||||||||||||| |||||||
Sbjct: 14  ttaagcttcaggttggtttgctagatgctgccttttatgggccatccattcctacaatga 73

                                                                       
Query: 184 tgcatctgcatgaaaagcctgaa----------acatgaggatgattccagttgagaacc 233
           || | || ||||  |||||||||          |||||| |||  |||||||||||||||
Sbjct: 74  tgaacctccatgctaagcctgaagtaaatgaagacatgaagattcttccagttgagaacc 133

                                                                       
Query: 234 atggagtgcgatgtatgtccatcgggtttcttgtagacaaagatgcaccaatcgtttgga 293
           |||| |||||||| |||||||| || |||||||||||||| ||||||||||| |||||||
Sbjct: 134 atggtgtgcgatgcatgtccattggttttcttgtagacaatgatgcaccaattgtttgga 193

                                                                       
Query: 294 gaggt--------aatgagtgctcttgagaagatgacaaggggagtagcctggggtaatc 345
           |||||        ||||||||||||||||||||||||||||||||| || |||||  | |
Sbjct: 194 gaggtcctatggtaatgagtgctcttgagaagatgacaaggggagttgcttggggggacc 253

                                                                       
Query: 346 tggatgttcttgttgntgatatgccccccggcactggtgatgctcaactatcaatgtccc 405
           | ||| ||||||||| |||||||||||| |||||||| |||||||||||||| |||||||
Sbjct: 254 ttgatattcttgttgttgatatgcccccaggcactggcgatgctcaactatcgatgtccc 313

                  
Query: 406 aaaggct 412
           |||||||
Sbjct: 314 aaaggct 320

---

>dbj|AK106686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C02, full
           insert sequence
          Length = 2347

 Score =  198 bits (100), Expect = 1e-47
 Identities = 151/168 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39  gacatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgcagttaac 98
           |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gacatcatcgccgtcgcctccgggaaaggcggcgtcggcaagtccaccactgcagttaac 376

                                                                       
Query: 99  attgctgtagcacttgcgaaggagtttaagctcaaggttggtttgctagatgctgatata 158
           ||||||||||||||||| ||| ||||| |||| ||||||||| || ||||||| || |||
Sbjct: 377 attgctgtagcacttgccaagaagtttcagcttaaggttggtctgttagatgccgacata 436

                                                           
Query: 159 tatgggccatccattcccacaatgatgcatctgcatgaaaagcctgaa 206
           ||||| |||||||| |||||||||||| |||| |||| ||| ||||||
Sbjct: 437 tatggaccatccatacccacaatgatgaatctccatgcaaaacctgaa 484



 Score =  180 bits (91), Expect = 2e-42
 Identities = 111/118 (94%)
 Strand = Plus / Plus

                                                                        
Query: 295  aggtaatgagtgctcttgagaagatgacaaggggagtagcctggggtaatctggatgttc 354
            ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||
Sbjct: 1548 aggtaatgagtgctcttgagaagattacaaggggggtagcctggggtaatcttgatattc 1607

                                                                      
Query: 355  ttgttgntgatatgccccccggcactggtgatgctcaactatcaatgtcccaaaggct 412
            |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1608 ttgttgttgatatgcccccgggcactggtgatgctcagctatcaatgtcccaaaggct 1665



 Score =  115 bits (58), Expect = 1e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                       
Query: 209 atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
           |||||||||||||||||||| ||| ||||||| | ||| |||||||| ||||||||||| 
Sbjct: 497 atgaggatgattccagttgacaactatggagtacaatgcatgtccattgggtttcttgtt 556

                                         
Query: 269 gacaaagatgcaccaatcgtttggagaggt 298
           ||||||||||||||||| ||||||||||||
Sbjct: 557 gacaaagatgcaccaattgtttggagaggt 586

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  180 bits (91), Expect = 2e-42
 Identities = 111/118 (94%)
 Strand = Plus / Plus

                                                                            
Query: 295      aggtaatgagtgctcttgagaagatgacaaggggagtagcctggggtaatctggatgttc 354
                ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||
Sbjct: 23718748 aggtaatgagtgctcttgagaagattacaaggggggtagcctggggtaatcttgatattc 23718807

                                                                          
Query: 355      ttgttgntgatatgccccccggcactggtgatgctcaactatcaatgtcccaaaggct 412
                |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 23718808 ttgttgttgatatgcccccgggcactggtgatgctcagctatcaatgtcccaaaggct 23718865



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                            
Query: 88       ctgcagttaacattgctgtagcacttgcgaaggagtttaagctcaaggttggtttgctag 147
                |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| || |||
Sbjct: 23716047 ctgcagttaacattgctgtagcacttgccaagaagtttcagcttaaggttggtctgttag 23716106

                                                                           
Query: 148      atgctgatatatatgggccatccattcccacaatgatgcatctgcatgaaaagcctgaa 206
                |||| || |||||||| |||||||| |||||||||||| |||| |||| ||| ||||||
Sbjct: 23716107 atgccgacatatatggaccatccatacccacaatgatgaatctccatgcaaaacctgaa 23716165



 Score =  115 bits (58), Expect = 1e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                            
Query: 209      atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
                |||||||||||||||||||| ||| ||||||| | ||| |||||||| ||||||||||| 
Sbjct: 23717697 atgaggatgattccagttgacaactatggagtacaatgcatgtccattgggtttcttgtt 23717756

                                              
Query: 269      gacaaagatgcaccaatcgtttggagaggt 298
                ||||||||||||||||| ||||||||||||
Sbjct: 23717757 gacaaagatgcaccaattgtttggagaggt 23717786



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                       
Query: 39       gacatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgcag 93
                |||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23715657 gacatcatcgccgtcgcctccgggaaaggcggcgtcggcaagtccaccactgcag 23715711

---

>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete
             sequence
          Length = 120116

 Score =  180 bits (91), Expect = 2e-42
 Identities = 111/118 (94%)
 Strand = Plus / Plus

                                                                         
Query: 295   aggtaatgagtgctcttgagaagatgacaaggggagtagcctggggtaatctggatgttc 354
             ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||
Sbjct: 50802 aggtaatgagtgctcttgagaagattacaaggggggtagcctggggtaatcttgatattc 50861

                                                                       
Query: 355   ttgttgntgatatgccccccggcactggtgatgctcaactatcaatgtcccaaaggct 412
             |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 50862 ttgttgttgatatgcccccgggcactggtgatgctcagctatcaatgtcccaaaggct 50919



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                         
Query: 88    ctgcagttaacattgctgtagcacttgcgaaggagtttaagctcaaggttggtttgctag 147
             |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| || |||
Sbjct: 48101 ctgcagttaacattgctgtagcacttgccaagaagtttcagcttaaggttggtctgttag 48160

                                                                        
Query: 148   atgctgatatatatgggccatccattcccacaatgatgcatctgcatgaaaagcctgaa 206
             |||| || |||||||| |||||||| |||||||||||| |||| |||| ||| ||||||
Sbjct: 48161 atgccgacatatatggaccatccatacccacaatgatgaatctccatgcaaaacctgaa 48219



 Score =  115 bits (58), Expect = 1e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                         
Query: 209   atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
             |||||||||||||||||||| ||| ||||||| | ||| |||||||| ||||||||||| 
Sbjct: 49751 atgaggatgattccagttgacaactatggagtacaatgcatgtccattgggtttcttgtt 49810

                                           
Query: 269   gacaaagatgcaccaatcgtttggagaggt 298
             ||||||||||||||||| ||||||||||||
Sbjct: 49811 gacaaagatgcaccaattgtttggagaggt 49840



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                    
Query: 39    gacatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgcag 93
             |||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 47711 gacatcatcgccgtcgcctccgggaaaggcggcgtcggcaagtccaccactgcag 47765

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  180 bits (91), Expect = 2e-42
 Identities = 111/118 (94%)
 Strand = Plus / Plus

                                                                            
Query: 295      aggtaatgagtgctcttgagaagatgacaaggggagtagcctggggtaatctggatgttc 354
                ||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||
Sbjct: 23711776 aggtaatgagtgctcttgagaagattacaaggggggtagcctggggtaatcttgatattc 23711835

                                                                          
Query: 355      ttgttgntgatatgccccccggcactggtgatgctcaactatcaatgtcccaaaggct 412
                |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 23711836 ttgttgttgatatgcccccgggcactggtgatgctcagctatcaatgtcccaaaggct 23711893



 Score =  125 bits (63), Expect = 1e-25
 Identities = 105/119 (88%)
 Strand = Plus / Plus

                                                                            
Query: 88       ctgcagttaacattgctgtagcacttgcgaaggagtttaagctcaaggttggtttgctag 147
                |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| || |||
Sbjct: 23709075 ctgcagttaacattgctgtagcacttgccaagaagtttcagcttaaggttggtctgttag 23709134

                                                                           
Query: 148      atgctgatatatatgggccatccattcccacaatgatgcatctgcatgaaaagcctgaa 206
                |||| || |||||||| |||||||| |||||||||||| |||| |||| ||| ||||||
Sbjct: 23709135 atgccgacatatatggaccatccatacccacaatgatgaatctccatgcaaaacctgaa 23709193



 Score =  115 bits (58), Expect = 1e-22
 Identities = 82/90 (91%)
 Strand = Plus / Plus

                                                                            
Query: 209      atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
                |||||||||||||||||||| ||| ||||||| | ||| |||||||| ||||||||||| 
Sbjct: 23710725 atgaggatgattccagttgacaactatggagtacaatgcatgtccattgggtttcttgtt 23710784

                                              
Query: 269      gacaaagatgcaccaatcgtttggagaggt 298
                ||||||||||||||||| ||||||||||||
Sbjct: 23710785 gacaaagatgcaccaattgtttggagaggt 23710814



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 52/55 (94%)
 Strand = Plus / Plus

                                                                       
Query: 39       gacatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgcag 93
                |||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23708685 gacatcatcgccgtcgcctccgggaaaggcggcgtcggcaagtccaccactgcag 23708739

---

>ref|NM_118074.1| Arabidopsis thaliana unknown protein AT4G19540 mRNA, complete cds
          Length = 1215

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 152/192 (79%), Gaps = 8/192 (4%)
 Strand = Plus / Plus

                                                                       
Query: 209 atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
           |||| ||||||||||||||||||| |||||||   ||| ||||| || ||  ||||||| 
Sbjct: 444 atgaagatgattccagttgagaactatggagttaaatgcatgtcaatgggacttcttgtt 503

                                                                       
Query: 269 gacaaagatgcaccaatcgtttggagaggt--------aatgagtgctcttgagaagatg 320
           || |||||||||||| | || |||||||||        ||||||||||||||  ||||||
Sbjct: 504 gaaaaagatgcaccacttgtctggagaggtcctatggtaatgagtgctcttgctaagatg 563

                                                                       
Query: 321 acaaggggagtagcctggggtaatctggatgttcttgttgntgatatgccccccggcact 380
           ||||  ||||| |  |||||  |||| ||| |||| |||| ||||||||| || || || 
Sbjct: 564 acaaaaggagttgattggggagatcttgatattctcgttgttgatatgccacctggaacc 623

                       
Query: 381 ggtgatgctcaa 392
           ||||||||||||
Sbjct: 624 ggtgatgctcaa 635

---

>gb|AY085137.1| Arabidopsis thaliana clone 13295 mRNA, complete sequence
          Length = 1216

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 152/192 (79%), Gaps = 8/192 (4%)
 Strand = Plus / Plus

                                                                       
Query: 209 atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
           |||| ||||||||||||||||||| |||||||   ||| ||||| || ||  ||||||| 
Sbjct: 444 atgaagatgattccagttgagaactatggagttaaatgcatgtcaatgggacttcttgtt 503

                                                                       
Query: 269 gacaaagatgcaccaatcgtttggagaggt--------aatgagtgctcttgagaagatg 320
           || |||||||||||| | || |||||||||        ||||||||||||||  ||||||
Sbjct: 504 gaaaaagatgcaccacttgtctggagaggtcctatggtaatgagtgctcttgctaagatg 563

                                                                       
Query: 321 acaaggggagtagcctggggtaatctggatgttcttgttgntgatatgccccccggcact 380
           ||||  ||||| |  |||||  |||| ||| |||| |||| ||||||||| || || || 
Sbjct: 564 acaaaaggagttgattggggagatcttgatattctcgttgttgatatgccacctggaacc 623

                       
Query: 381 ggtgatgctcaa 392
           ||||||||||||
Sbjct: 624 ggtgatgctcaa 635

---

>emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51
          Length = 197114

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 295   aggtaatgagtgctcttgagaagatgacaaggggagtagcctggggtaatctggatgttc 354
             ||||||||||||||||||  ||||||||||  ||||| |  |||||  |||| ||| |||
Sbjct: 47974 aggtaatgagtgctcttgctaagatgacaaaaggagttgattggggagatcttgatattc 48033

                                                   
Query: 355   ttgttgntgatatgccccccggcactggtgatgctcaa 392
             | |||| ||||||||| || || || ||||||||||||
Sbjct: 48034 tcgttgttgatatgccacctggaaccggtgatgctcaa 48071



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                         
Query: 209   atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
             |||| ||||||||||||||||||| |||||||   ||| ||||| || ||  ||||||| 
Sbjct: 47790 atgaagatgattccagttgagaactatggagttaaatgcatgtcaatgggacttcttgtt 47849

                                           
Query: 269   gacaaagatgcaccaatcgtttggagaggt 298
             || |||||||||||| | || |||||||||
Sbjct: 47850 gaaaaagatgcaccacttgtctggagaggt 47879

---

>emb|AL021768.1|ATF24J7 Arabidopsis thaliana DNA chromosome 4, BAC clone F24J7 (ESSA project)
          Length = 86554

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 295   aggtaatgagtgctcttgagaagatgacaaggggagtagcctggggtaatctggatgttc 354
             ||||||||||||||||||  ||||||||||  ||||| |  |||||  |||| ||| |||
Sbjct: 50614 aggtaatgagtgctcttgctaagatgacaaaaggagttgattggggagatcttgatattc 50673

                                                   
Query: 355   ttgttgntgatatgccccccggcactggtgatgctcaa 392
             | |||| ||||||||| || || || ||||||||||||
Sbjct: 50674 tcgttgttgatatgccacctggaaccggtgatgctcaa 50711



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                         
Query: 209   atgaggatgattccagttgagaaccatggagtgcgatgtatgtccatcgggtttcttgta 268
             |||| ||||||||||||||||||| |||||||   ||| ||||| || ||  ||||||| 
Sbjct: 50430 atgaagatgattccagttgagaactatggagttaaatgcatgtcaatgggacttcttgtt 50489

                                           
Query: 269   gacaaagatgcaccaatcgtttggagaggt 298
             || |||||||||||| | || |||||||||
Sbjct: 50490 gaaaaagatgcaccacttgtctggagaggt 50519

---

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                     
Query: 51      gtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
               ||||||||||| || |||||||||||||||||||||||
Sbjct: 4151096 gtcgcctcgggcaagggcggcgtcggcaagtccaccac 4151133

---

>emb|CR685323.2|CNS0FRQV Tetraodon nigroviridis full-length cDNA
          Length = 1390

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 54  gcctcggggaaaggcggcgtcggcaagtccaccactgcagt 94
           |||||||||||||| || ||||| |||||||||||||||||
Sbjct: 238 gcctcggggaaaggtggtgtcggaaagtccaccactgcagt 278

---

>emb|CR681871.2|CNS0FP2Z Tetraodon nigroviridis full-length cDNA
          Length = 1400

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 54  gcctcggggaaaggcggcgtcggcaagtccaccactgcagt 94
           |||||||||||||| || ||||| |||||||||||||||||
Sbjct: 238 gcctcggggaaaggtggtgtcggaaagtccaccactgcagt 278

---

>emb|CR647266.2|CNS0EYEG Tetraodon nigroviridis full-length cDNA
          Length = 1399

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 54  gcctcggggaaaggcggcgtcggcaagtccaccactgcagt 94
           |||||||||||||| || ||||| |||||||||||||||||
Sbjct: 228 gcctcggggaaaggtggtgtcggaaagtccaccactgcagt 268

---

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                        
Query: 51      gtcgcctcggggaaaggcggcgtcggcaagtccaccactgc 91
               |||||||| || || ||||||||||||||||||||||||||
Sbjct: 1267741 gtcgcctccggcaagggcggcgtcggcaagtccaccactgc 1267701

---

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 41     catcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
              ||||||||| |||||||| || || ||||| |||||||||||||||||
Sbjct: 900250 catcattgccgtcgcctccggcaagggcggggtcggcaagtccaccac 900297

---

>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 40    acatcattgctgtcgcctcggggaaaggcggcgtcggcaa 79
             |||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 57912 acatcattgccgtcgcctcgggaaaaggcggcgtgggcaa 57873

---

>gb|DQ118108.1| Sorghum bicolor plastid division regulator MinD mRNA, complete cds;
           nuclear gene for plastid product
          Length = 1121

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 55  cctcggggaaaggcggcgtcggcaagtccaccact 89
           |||| ||||||||||||||||||||| ||||||||
Sbjct: 278 cctccgggaaaggcggcgtcggcaagaccaccact 312

---

>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 51    gtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
             |||||||| || |||||||||||||||||||| |||||
Sbjct: 44256 gtcgcctccggtaaaggcggcgtcggcaagtcgaccac 44293

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 42     atcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgc 91
              |||||||| || || ||||| ||||||||||||||||| || ||||||||
Sbjct: 130678 atcattgcggtggcgtcgggcaaaggcggcgtcggcaaatcgaccactgc 130727

---

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                             
Query: 43      tcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
               ||||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 1562147 tcattgcggtcgcatcgggcaagggcggcgtcgggaagtccaccac 1562102

---

>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                                
Query: 40      acatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
               |||||||||| ||||| || || |||||||| ||||| |||||||||||
Sbjct: 1111965 acatcattgccgtcgcttccggcaaaggcggggtcgggaagtccaccac 1111917



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 40     acatcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
              |||||||||| ||||| || || |||||||| ||||| |||||||||||
Sbjct: 968933 acatcattgccgtcgcttccggcaaaggcggggtcgggaagtccaccac 968885

---

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 40      acatcattgctgtcgcctcggggaaaggcggcgtcgg 76
               ||||||| || |||||||| |||||||||||||||||
Sbjct: 1363063 acatcatcgcggtcgcctccgggaaaggcggcgtcgg 1363099

---

>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 132     aaggttggtttgctagatgctgatatatatgggcca 167
               |||||||| ||||| ||||||||||| |||||||||
Sbjct: 1092523 aaggttggcttgcttgatgctgatatttatgggcca 1092488

---

>gb|AE009786.1|AE009786 Pyrobaculum aerophilum strain IM2 section 41 of 201 of the complete
           genome
          Length = 10664

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 56  ctcggggaaaggcggcgtcggcaagtcc 83
           |||||||||||| |||||||||||||||
Sbjct: 847 ctcggggaaaggaggcgtcggcaagtcc 874

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 54      gcctcggggaaaggcggcgtcggcaagtccaccactgcagttaa 97
               |||||||| |||||||| ||||||||||| ||||| || |||||
Sbjct: 4317717 gcctcgggcaaaggcggtgtcggcaagtcgaccaccgccgttaa 4317760

---

>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 51    gtcgcctcggggaaaggcggcgtcggcaagtc 82
             ||||| |||||||||||||| |||||||||||
Sbjct: 48405 gtcgcttcggggaaaggcggggtcggcaagtc 48374

---

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 57      tcggggaaaggcggcgtcggcaagtccaccactgc 91
               ||||| || |||||||| |||||||||||||||||
Sbjct: 3287479 tcgggcaagggcggcgtgggcaagtccaccactgc 3287445



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 62      gaaaggcggcgtcggcaagtccac 85
               ||||||||||||||||||| ||||
Sbjct: 4615505 gaaaggcggcgtcggcaagaccac 4615528

---

>ref|XM_723566.1| Plasmodium yoelii yoelii str. 17XNL polysaccharide export protein
           (PY07707) partial mRNA
          Length = 599

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 42  atcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
           |||||||| ||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 127 atcattgccgtcgcttcgggcaaaggaggggtcggcaagtcgaccac 173

---

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 54      gcctcggggaaaggcggcgtcggcaagtccaccac 88
               ||||| || |||||||||||||||||||| |||||
Sbjct: 2262057 gcctccggcaaaggcggcgtcggcaagtcgaccac 2262091



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 63      aaaggcggcgtcggcaagtccacca 87
               ||||||||||||||||| |||||||
Sbjct: 5009254 aaaggcggcgtcggcaaatccacca 5009230



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 66      ggcggcgtcggcaagtccaccact 89
               |||||| |||||||||||||||||
Sbjct: 4970050 ggcggcatcggcaagtccaccact 4970027

---

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                            
Query: 42    atcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
             |||||||| ||||| ||||| ||||| || ||||||||||| |||||
Sbjct: 52733 atcattgccgtcgcttcgggcaaaggaggggtcggcaagtcgaccac 52779



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 63     aaaggcggcgtcggcaagtccaccac 88
              ||||||||| ||||||||||||||||
Sbjct: 226275 aaaggcggcatcggcaagtccaccac 226300



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 62      gaaaggcggcgtcggcaagtccacc 86
               ||||||||||||||||||| |||||
Sbjct: 2533579 gaaaggcggcgtcggcaagaccacc 2533603

---

>gb|AE004769.1| Pseudomonas aeruginosa PAO1, section 330 of 529 of the complete
            genome
          Length = 13017

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 66   ggcggcgtcggcaagtccaccac 88
            |||||||||||||||||||||||
Sbjct: 1680 ggcggcgtcggcaagtccaccac 1658

---

>emb|Z54207.1|HSNIFHDK H.seropedicae nifD, nifH and nifK genes
          Length = 4241

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 63  aaaggcggcgtcggcaagtccaccac 88
           ||||||||| ||||||||||||||||
Sbjct: 598 aaaggcggcatcggcaagtccaccac 623

---

>gb|AE011913.1| Xanthomonas axonopodis pv. citri str. 306,  section 291 of 469 of the
            complete genome
          Length = 11331

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 66   ggcggcgtcggcaagtccaccactgc 91
            |||||||| |||||||||||||||||
Sbjct: 7697 ggcggcgtgggcaagtccaccactgc 7672

---

>dbj|AB196476.1| Herbaspirillum sp. B501 nifH, nifD genes for nitrogenase iron
           protein, nitrogenase Mo-Fe protein alpha chain, complete
           and partial cds
          Length = 2855

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 63  aaaggcggcgtcggcaagtccaccac 88
           ||||||||| ||||||||||||||||
Sbjct: 688 aaaggcggcatcggcaagtccaccac 713

---

>gb|DQ073946.1| Herbaspirillum seropedicae strain S23 nitrogenase iron protein
           (nifH) gene, partial cds
          Length = 1027

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 63  aaaggcggcgtcggcaagtccaccac 88
           ||||||||| ||||||||||||||||
Sbjct: 441 aaaggcggcatcggcaagtccaccac 416

---

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 51     gtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
              ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 948347 gtcgcgtcgggcaagggcggcgtcgggaagtccaccac 948384

---

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                           
Query: 42      atcattgctgtcgcctcggggaaaggcggcgtcggcaagtccaccactgcagttaacatt 101
               |||||||| || ||||||||||| ||||| || ||||| ||| |||| ||||| ||| ||
Sbjct: 2261258 atcattgccgtggcctcggggaagggcggggtgggcaaatccgccacggcagtcaacctt 2261199

                 
Query: 102     gc 103
               ||
Sbjct: 2261198 gc 2261197

---

>ref|NM_001030326.2| Xenopus tropicalis ELAVL3 protein (ELAVL3), mRNA
          Length = 1786

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 ttgtagacaaagatgcaccaa 284
           |||||||||||||||||||||
Sbjct: 956 ttgtagacaaagatgcaccaa 936

---

>gb|AY098590.1| Burkholderia kururiensis strain KP23 NifH gene, partial cds
          Length = 392

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 60 gggaaaggcggcgtcggcaagtccaccac 88
          |||||||| ||| ||||||||||||||||
Sbjct: 18 gggaaagggggcatcggcaagtccaccac 46

---

>gb|BC080177.1| Xenopus tropicalis cDNA clone IMAGE:7030070
          Length = 2248

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  ttgtagacaaagatgcaccaa 284
            |||||||||||||||||||||
Sbjct: 1277 ttgtagacaaagatgcaccaa 1257

---

>ref|XM_421229.1| PREDICTED: Gallus gallus similar to chromosome 14 open reading
           frame 127 (LOC423312), mRNA
          Length = 2053

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 135 gttggtttgctagatgctgatatatatgggccatccattcc 175
           ||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 322 gttggtttgcttgatgcagacatatatgggccttcaattcc 362

---

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 68      cggcgtcggcaagtccaccac 88
               |||||||||||||||||||||
Sbjct: 2901837 cggcgtcggcaagtccaccac 2901857

---

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 67     gcggcgtcggcaagtccaccactgc 91
              |||||||||||||| ||||||||||
Sbjct: 103305 gcggcgtcggcaagaccaccactgc 103281

---

>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 60     gggaaaggcggcgtcggcaagtccaccac 88
              |||||||||||  ||||||||||||||||
Sbjct: 225829 gggaaaggcgggatcggcaagtccaccac 225801

---

>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 56     ctcggggaaaggcggcgtcggcaagtccaccac 88
              |||||| || ||||||||||||||| |||||||
Sbjct: 142104 ctcgggcaagggcggcgtcggcaagaccaccac 142136

---

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 62     gaaaggcggcgtcggcaagtccaccactgcagt 94
              ||||||||||||||||||| |||| || |||||
Sbjct: 511469 gaaaggcggcgtcggcaagaccacgaccgcagt 511437



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                           
Query: 45      attgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
               ||||| || |||||||| || ||||| || ||||||||||||||
Sbjct: 3517752 attgcggtggcctcgggcaagggcggggtgggcaagtccaccac 3517709

---

>gb|DQ284983.1| Rhizobium sp. NCHA22 NifH (nifH) gene, partial cds
          Length = 800

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 60 gggaaaggcggcgtcggcaagtccaccac 88
          |||||||||||  ||||||||||||||||
Sbjct: 16 gggaaaggcggtatcggcaagtccaccac 44

---

>emb|BX950795.2| Gallus gallus finished cDNA, clone ChEST716l24
          Length = 1601

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 135 gttggtttgctagatgctgatatatatgggccatccattcc 175
           ||||||||||| ||||| || ||||||||||| || |||||
Sbjct: 611 gttggtttgcttgatgcagacatatatgggccttcaattcc 651

---

>emb|CR761704.2| Xenopus tropicalis finished cDNA, clone TGas116i13
          Length = 1786

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 264 ttgtagacaaagatgcaccaa 284
           |||||||||||||||||||||
Sbjct: 956 ttgtagacaaagatgcaccaa 936

---

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 62     gaaaggcggcgtcggcaagtccaccactgcagt 94
              ||||||||||||||||||| |||| || |||||
Sbjct: 523613 gaaaggcggcgtcggcaagaccacgaccgcagt 523581



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                           
Query: 45      attgctgtcgcctcggggaaaggcggcgtcggcaagtccaccac 88
               ||||| || |||||||| || ||||| || ||||||||||||||
Sbjct: 3513271 attgcggtggcctcgggcaagggcggggtgggcaagtccaccac 3513228

---

>gb|U17598.1|XLU17598 Xenopus laevis ribonucleoprotein (elrC) mRNA, complete cds
          Length = 1783

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 264  ttgtagacaaagatgcaccaa 284
            |||||||||||||||||||||
Sbjct: 1289 ttgtagacaaagatgcaccaa 1269

---

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 51      gtcgcctcggggaaaggcggcgtcggcaagtccacc 86
               ||||||||||| || |||||||| ||||| ||||||
Sbjct: 1920807 gtcgcctcgggcaagggcggcgtgggcaaatccacc 1920842

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aaaggcggcgtcggcaagtc 82
              ||||||||||||||||||||
Sbjct: 155116 aaaggcggcgtcggcaagtc 155135

---

>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence
          Length = 2107794

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ggcggcgtcggcaagtccac 85
             ||||||||||||||||||||
Sbjct: 63861 ggcggcgtcggcaagtccac 63880

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     aaaggcggcgtcggcaagtc 82
              ||||||||||||||||||||
Sbjct: 154924 aaaggcggcgtcggcaagtc 154943

---

>ref|XM_956943.1| Neurospora crassa OR74A hypothetical protein (NCU08825.1) partial
           mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  ggcggcgtcggcaagtccac 85
           ||||||||||||||||||||
Sbjct: 259 ggcggcgtcggcaagtccac 278

---

>ref|XM_330941.1| Neurospora crassa OR74A hypothetical protein (NCU08825.1) partial
           mRNA
          Length = 1035

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  ggcggcgtcggcaagtccac 85
           ||||||||||||||||||||
Sbjct: 259 ggcggcgtcggcaagtccac 278

---

>gb|DQ377804.1|DQ377804S1 Squirrelpox virus 1296/99, partial genome
          Length = 25260

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     cgccgccgcgaagggcgggc 21
             ||||||||||||||||||||
Sbjct: 21077 cgccgccgcgaagggcgggc 21058

---

>ref|XM_875359.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 13 (LOC535408), mRNA
          Length = 3962

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1115 ttgtagacaaagatgcacca 1096

---

>ref|XM_875285.1| PREDICTED: Bos taurus similar to ELAV-like protein 4
           (Paraneoplastic encephalomyelitis antigen HuD)
           (Hu-antigen D), transcript variant 12 (LOC535408), mRNA
          Length = 3775

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 942 ttgtagacaaagatgcacca 923

---

>ref|XM_875214.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 11 (LOC535408), mRNA
          Length = 3947

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1114 ttgtagacaaagatgcacca 1095

---

>ref|XM_865099.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 2 (LOC535408), mRNA
          Length = 4028

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1195 ttgtagacaaagatgcacca 1176

---

>ref|XM_875075.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 10 (LOC535408), mRNA
          Length = 4019

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1186 ttgtagacaaagatgcacca 1167

---

>ref|XM_874989.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 9 (LOC535408), mRNA
          Length = 4058

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1225 ttgtagacaaagatgcacca 1206

---

>ref|XM_615488.2| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 1 (LOC535408), mRNA
          Length = 3961

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1128 ttgtagacaaagatgcacca 1109

---

>ref|XM_874833.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 8 (LOC535408), mRNA
          Length = 3950

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1117 ttgtagacaaagatgcacca 1098

---

>ref|XM_874743.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 7 (LOC535408), mRNA
          Length = 3959

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1126 ttgtagacaaagatgcacca 1107

---

>ref|XM_874658.1| PREDICTED: Bos taurus similar to ELAV-like protein 4 (Paraneoplastic
            encephalomyelitis antigen HuD) (Hu-antigen D), transcript
            variant 6 (LOC535408), mRNA
          Length = 3986

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1153 ttgtagacaaagatgcacca 1134

---

>ref|XM_874412.1| PREDICTED: Bos taurus similar to ELAV-like protein 4
           (Paraneoplastic encephalomyelitis antigen HuD)
           (Hu-antigen D), transcript variant 3 (LOC535408), mRNA
          Length = 3813

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 980 ttgtagacaaagatgcacca 961

---

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 57      tcggggaaaggcggcgtcggcaagtccaccac 88
               ||||| || ||||| |||||||||||||||||
Sbjct: 1601105 tcgggcaagggcggtgtcggcaagtccaccac 1601136

---

>gb|AC147066.2| Pan troglodytes BAC clone RP43-164F2 from 7, complete sequence
          Length = 149431

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   ggtgatgctcaactatcaat 400
             ||||||||||||||||||||
Sbjct: 10303 ggtgatgctcaactatcaat 10284

---

>gb|AC146512.2| Pan troglodytes BAC clone RP43-16E21 from 7, complete sequence
          Length = 178648

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    ggtgatgctcaactatcaat 400
              ||||||||||||||||||||
Sbjct: 174197 ggtgatgctcaactatcaat 174216

---

>ref|XM_855320.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 17
            (LOC475361), mRNA
          Length = 4020

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1153 ttgtagacaaagatgcacca 1134

---

>ref|XM_855281.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 16
            (LOC475361), mRNA
          Length = 3981

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1114 ttgtagacaaagatgcacca 1095

---

>ref|XM_532585.2| PREDICTED: Canis familiaris similar to HUD3, transcript variant 1
           (LOC475361), mRNA
          Length = 3809

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 942 ttgtagacaaagatgcacca 923

---

>ref|XM_844876.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 3
            (LOC475361), mRNA
          Length = 4062

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1195 ttgtagacaaagatgcacca 1176

---

>ref|XM_855179.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 15
            (LOC475361), mRNA
          Length = 4004

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1137 ttgtagacaaagatgcacca 1118

---

>ref|XM_855143.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 14
            (LOC475361), mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1162 ttgtagacaaagatgcacca 1143

---

>ref|XM_855114.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 13
            (LOC475361), mRNA
          Length = 3889

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1022 ttgtagacaaagatgcacca 1003

---

>ref|XM_855083.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 12
            (LOC475361), mRNA
          Length = 3993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1126 ttgtagacaaagatgcacca 1107

---

>ref|XM_855040.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 11
            (LOC475361), mRNA
          Length = 3984

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1117 ttgtagacaaagatgcacca 1098

---

>ref|XM_855005.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 10
            (LOC475361), mRNA
          Length = 4002

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1135 ttgtagacaaagatgcacca 1116

---

>ref|XM_854972.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 9
           (LOC475361), mRNA
          Length = 3850

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 983 ttgtagacaaagatgcacca 964

---

>ref|XM_854932.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 8
           (LOC475361), mRNA
          Length = 3853

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 986 ttgtagacaaagatgcacca 967

---

>ref|XM_854894.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 7
           (LOC475361), mRNA
          Length = 3859

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 992 ttgtagacaaagatgcacca 973

---

>ref|XM_854856.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 6
            (LOC475361), mRNA
          Length = 3950

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1083 ttgtagacaaagatgcacca 1064

---

>ref|XM_854825.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 5
            (LOC475361), mRNA
          Length = 4006

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1124 ttgtagacaaagatgcacca 1105

---

>ref|XM_854786.1| PREDICTED: Canis familiaris similar to HUD3, transcript variant 4
           (LOC475361), mRNA
          Length = 3847

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 980 ttgtagacaaagatgcacca 961

---

>gb|AC006332.3| Homo sapiens BAC clone RP11-376O14 from 7, complete sequence
          Length = 153477

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    ggtgatgctcaactatcaat 400
              ||||||||||||||||||||
Sbjct: 144522 ggtgatgctcaactatcaat 144541

---

>gb|AC146185.2| Pan troglodytes BAC clone RP43-35O6 from 7, complete sequence
          Length = 156598

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    ggtgatgctcaactatcaat 400
              ||||||||||||||||||||
Sbjct: 141542 ggtgatgctcaactatcaat 141523

---

>emb|AL592182.6| Human DNA sequence from clone RP11-567C20 on chromosome 1 Contains the
             3' end of the ELAVL4 gene for ELAV (embryonic lethal,
             abnormal vision, Drosophila)-like 4 ((Hu antigen D) and
             two novel genes, complete sequence
          Length = 112873

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ttgtagacaaagatgcacca 283
             ||||||||||||||||||||
Sbjct: 38692 ttgtagacaaagatgcacca 38673

---

>ref|NM_021952.2| Homo sapiens ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D) (ELAVL4), mRNA
          Length = 1591

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1132 ttgtagacaaagatgcacca 1113

---

>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gggaaaggcggcgtcggcaa 79
             ||||||||||||||||||||
Sbjct: 59202 gggaaaggcggcgtcggcaa 59221

---

>gb|BC036071.1| Homo sapiens ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 4 (Hu antigen D), mRNA (cDNA clone
            MGC:33705 IMAGE:5286347), complete cds
          Length = 3951

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1094 ttgtagacaaagatgcacca 1075

---

>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 40     acatcattgctgtcgcctcggggaaaggcggcgtcggcaa 79
              ||||||| || |||||||| || ||||||||||| |||||
Sbjct: 248150 acatcatcgccgtcgcctctggcaaaggcggcgtgggcaa 248111

---

>emb|AJ297913.2|PPI297913 Plasmid pIPO2T, complete sequence
          Length = 45319

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   aaaggcggcgtcggcaagtc 82
            ||||||||||||||||||||
Sbjct: 8525 aaaggcggcgtcggcaagtc 8544

---

>gb|AY033998.1| Homo sapiens HUDPRO1 mRNA, complete cds
          Length = 1591

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1132 ttgtagacaaagatgcacca 1113

---

>gb|AY033997.1| Homo sapiens HUD1 mRNA, complete cds
          Length = 1582

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1123 ttgtagacaaagatgcacca 1104

---

>gb|AY033996.1| Homo sapiens HUD4 mRNA, complete cds
          Length = 1415

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 959 ttgtagacaaagatgcacca 940

---

>gb|AY033995.1| Homo sapiens HUD3 mRNA, complete cds
          Length = 1406

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 948 ttgtagacaaagatgcacca 929

---

>emb|CR625475.1| full-length cDNA clone CS0DD001YC24 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 907

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 514 ttgtagacaaagatgcacca 495

---

>emb|CR613627.1| full-length cDNA clone CS0DD003YD17 of Neuroblastoma Cot
            50-normalized of Homo sapiens (human)
          Length = 1467

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1093 ttgtagacaaagatgcacca 1074

---

>emb|CR595508.1| full-length cDNA clone CS0DC005YB08 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 1326

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 264 ttgtagacaaagatgcacca 283
           ||||||||||||||||||||
Sbjct: 923 ttgtagacaaagatgcacca 904

---

>gb|AE012506.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 414
           of 460 of the complete genome
          Length = 10939

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 62  gaaaggcggcgtcggcaagtccac 85
           ||||||||||||||||||| ||||
Sbjct: 824 gaaaggcggcgtcggcaagaccac 847

---

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 62      gaaaggcggcgtcggcaagtccac 85
               ||||||||||||||||||| ||||
Sbjct: 4646917 gaaaggcggcgtcggcaagaccac 4646940

---

>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 40      acatcattgctgtcgcctcggggaaaggcggcgtcggcaa 79
               ||||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 1945362 acatcatcgccgtcgcatcgggaaaaggcggcgtgggcaa 1945401

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 67      gcggcgtcggcaagtccacc 86
               ||||||||||||||||||||
Sbjct: 7112592 gcggcgtcggcaagtccacc 7112611

---

>gb|AE009622.1| Brucella melitensis 16M chromosome I, section 179 of 195 of the
            complete sequence
          Length = 14598

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   ggcggcgtcggcaagtccac 85
            ||||||||||||||||||||
Sbjct: 4823 ggcggcgtcggcaagtccac 4804

---

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 51      gtcgcctcggggaaaggcggcgtcggcaagtc 82
               |||||||| || || |||||||||||||||||
Sbjct: 3885329 gtcgcctccggcaagggcggcgtcggcaagtc 3885360

---

>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence
          Length = 2124241

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ggcggcgtcggcaagtccac 85
             ||||||||||||||||||||
Sbjct: 63505 ggcggcgtcggcaagtccac 63524

---

>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0592C05
          Length = 150478

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    gcggcgtcggcaagtccacc 86
             ||||||||||||||||||||
Sbjct: 64671 gcggcgtcggcaagtccacc 64690

---

>gb|AE005043.1| Halobacterium sp. NRC-1 section 74 of 170 of the complete genome
          Length = 11677

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 46   ttgctgtcgcctcggggaaaggcggcgtcggcaagtccac 85
            |||| |||||||| || ||||| || ||||||||||||||
Sbjct: 4146 ttgcggtcgcctccggcaaaggtggggtcggcaagtccac 4107

---

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 62      gaaaggcggcgtcggcaagtccac 85
               ||||||||||||||||||| ||||
Sbjct: 2808891 gaaaggcggcgtcggcaagaccac 2808868

---

>gb|AC155274.2| Mus musculus BAC clone RP23-55F17 from 12, complete sequence
          Length = 127447

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   tagcctggggtaatctggat 350
             ||||||||||||||||||||
Sbjct: 65456 tagcctggggtaatctggat 65437

---

>gb|U62986.1|PFU62986 Pseudomonas fragi cold acclimation protein B (capB) and ATPase genes,
            complete cds
          Length = 2154

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 54   gcctcggggaaaggcggcgtcggcaagtccaccactgcag 93
            |||||||| ||||||||||| || || |||||||| ||||
Sbjct: 1910 gcctcgggcaaaggcggcgtgggtaaatccaccacggcag 1871

---

>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 363     gatatgccccccggcactgg 382
               ||||||||||||||||||||
Sbjct: 1932110 gatatgccccccggcactgg 1932129

---

>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence,
             strain 2308
          Length = 2121359

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ggcggcgtcggcaagtccac 85
             ||||||||||||||||||||
Sbjct: 59906 ggcggcgtcggcaagtccac 59925

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 62      gaaaggcggcgtcggcaagtccac 85
               ||||||||||||||||||| ||||
Sbjct: 1995255 gaaaggcggcgtcggcaagaccac 1995278

---

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 52    tcgcctcggggaaaggcggcgtcggcaagtcc 83
             ||||||| || || ||||||||||||||||||
Sbjct: 70193 tcgcctccggtaagggcggcgtcggcaagtcc 70224

---

>gb|M62843.1|HUMBRAINPR Human brain protein recognized by the sera of patients with
            paraneoplastic sensory neuronopathy mRNA, complete cds
          Length = 1441

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  ttgtagacaaagatgcacca 283
            ||||||||||||||||||||
Sbjct: 1002 ttgtagacaaagatgcacca 983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,924,146
Number of Sequences: 3902068
Number of extensions: 2924146
Number of successful extensions: 76682
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75906
Number of HSP's gapped (non-prelim): 772
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---