>PTC1_BRARE (Q98864) Protein patched homolog 1 (Patched 1) (PTC1)|
          Length = 1220

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 271 PQRSHSIQRPSSIHASFCCLQLLQHNLAQISKSKTLSQKASIWSTVR 131
           P  S  ++RPS  HA+F         L QISK K + QKA +W   R
Sbjct: 28  PVNSDLLRRPSYCHAAFA--------LKQISKGKAVGQKAPLWIRAR 66

>ITA7_HUMAN (Q13683) Integrin alpha-7 precursor [Contains: Integrin alpha-7 heavy|
            chain; Integrin alpha-7 light chain]
          Length = 1181

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 460  GLCSLQEDVIHASVDDIERRLQEITVSDMSEKDDGESSLMSSGKDIAVWIMVSSA 624
            GLCS + +++H  VD  +RR +E+   +  E  + +   MS       W  VSSA
Sbjct: 937  GLCSPRPNILHLDVDSRDRRRRELEPPEQQEPGERQEPSMS-------WWPVSSA 984

>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC|
            2.1.1.43) (Trithorax-related protein 3) (TRX-related
            protein 3) (Protein SET DOMAIN GROUP 2)
          Length = 2351

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +1

Query: 490  HASVDDIERRLQEITVSDMSEKDDGESSLMSSGKDIAVWIMVSSASVAEYQHDLRAK 660
            +AS  +I+RRL ++     S + D  S L  +GK        SSAS +E + D+R++
Sbjct: 1498 YASDREIKRRLSKLNRKSFSSESDTSSELSDNGKS----DNYSSASASESESDIRSE 1550

>PT494_YEAST (P07390) COX3 mRNA-specific translational activator PET494|
          Length = 489

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
 Frame = +1

Query: 400 RTLLSTFAAPGNIVFQ----ILPLGLCSLQEDVIHASVDDIERRLQEITVSDMSEKDDGE 567
           RTL   F APGN++F     +  +G+ +    V  +S    E ++    VS   ++++ E
Sbjct: 62  RTLWRYFNAPGNLMFVTTNIVAFMGIVTYNTLVTISSERAFEEQMMAAQVSLAKQREELE 121

Query: 568 SSLMSSGKDIAVW-----IMVSSASVAEYQHDLRAKEHNAR 675
           ++ +S  +DI +      I      VA  + D   +E NA+
Sbjct: 122 TTALSLPRDIELRGEEDDIKWEQPDVAHVREDPLVEEQNAK 162

>HIS4_SYNPX (Q7U851) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 255

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 301 GPSIQELRKMPKSSSL-IIGHDGAGGFCLWDISKRTLLSTFAAPGNIVFQILPLGLCSLQ 477
           GP+++ LR M  SSS+ +I   G G  C+ D+     L      G IV + L  G   L 
Sbjct: 176 GPNLEALRTMAASSSVPVIASGGIG--CMADLLSLLPLEPLGVSGVIVGRALYDGRVDLA 233

Query: 478 EDVIHASVDDIERRLQEIT 534
           E V   +    E RLQ+IT
Sbjct: 234 EAVRALA----EPRLQDIT 248

>RL16_LACPL (Q88XX9) 50S ribosomal protein L16|
          Length = 144

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = -1

Query: 557 SFSDMSLTVISCNLLSMSSTEA*ITSSCKLQRPRGRIWKTMFPGAAKVDKSVRLEMSHKQ 378
           +F D  L  +  + +S    EA   +  +  +  G++W  +FP  +  +K V + M + +
Sbjct: 28  AFGDYGLQTLESHWISNRQIEAARVAMNRYMKRGGKVWIKIFPHKSYTEKGVGVRMGNGK 87

Query: 377 KPPA 366
             PA
Sbjct: 88  GTPA 91

>QUEF_HAEDU (Q7VL22) 7-cyano-7-deazaguanine reductase (EC 1.7.1.-)|
          Length = 279

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 273 LLRDHTPSSDHHPYMQVSAVFSCYNIIWL 187
           L RDH   ++  P+ Q + V++CY + WL
Sbjct: 35  LNRDHLGITEQQPFNQGADVWTCYEVSWL 63

>1A111_ARATH (Q9S9U6) 1-aminocyclopropane-1-carboxylate synthase 11 (EC|
           4.4.1.14) (ACC synthase 11) (S-adenosyl-L-methionine
           methylthioadenosine-lyase 11)
          Length = 460

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -2

Query: 196 NLAQISKSKTLSQKASIWSTVRCSPS*QIQSSENCHRTDP----LCTRSMNTQ 50
           +L  + KS T   + S+W+ + C     I    +CH  +P    +C  +M+ Q
Sbjct: 358 DLRHLLKSNTFEAEHSLWTKIVCEVGLNISPGSSCHCDEPGWFRVCFANMSDQ 410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,640,572
Number of Sequences: 219361
Number of extensions: 2086212
Number of successful extensions: 5396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5395
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)