ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26i20 |
|---|---|
| Clone Library Name | barley_pub |
>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)| (Fragment) Length = 461 Score = 175 bits (444), Expect = 1e-43 Identities = 93/218 (42%), Positives = 136/218 (62%) Frame = +3 Query: 12 CGSFLIRHTKSAIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGPSNVCTK 191 CG FL HT++A+ +G + + +IN AL N +VQ+RLG+F+ + LGP +VCT Sbjct: 12 CGPFLAIHTEAAVRRGLVSQLEINWALANTMTVQMRLGMFDGEPSAHQYGNLGPRDVCTP 71 Query: 192 EHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYTGVPCDPIT 371 H++LA EA RQG VLL+N LPL + +A+IG ++ M G+Y GV C T Sbjct: 72 AHQQLALEAARQGIVLLENRGRSLPLSTRRHRTVAVIGPNSDVTVTMIGNYAGVACGYTT 131 Query: 372 FLKGMQAFVPQTTVAAGCKDVSCDSPDGFGEAIEAAKRADIVVVIAGLNLTQESEDLDRV 551 L+G+ + +T AGC DV C+ FG A AA++AD V++ GL+ + E+E +DR Sbjct: 132 PLQGIGRYT-RTIHQAGCTDVHCNGNQLFGAAEAAARQADATVLVMGLDQSIEAEFVDRA 190 Query: 552 TLLLPGRQQDLVNIIASVTKKPIVLVITGGGPVDVAFA 665 LLLPG QQ+LV+ +A ++ P +LV+ GGP+DV FA Sbjct: 191 GLLLPGHQQELVSRVARASRGPTILVLMSGGPIDVTFA 228
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 82.0 bits (201), Expect = 1e-15 Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 31/238 (13%) Frame = +3 Query: 30 RHTKSAIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGP-------SNVCT 188 ++ I+ GK+ +++ A ++ +V+ +GLF N ++ LGP +N + Sbjct: 326 KYLPGLIKSGKVTMAELDDATRHVLNVKYDMGLF-----NDPYSHLGPKESDPVDTNAES 380 Query: 189 KEHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYT--GVPCD 362 + HR+ A E R+ VLLKN LPLK+S IA++G A+ + G ++ GV Sbjct: 381 RLHRKEAREVARESVVLLKNRLETLPLKKSGT--IAVVGPLADSQRDVMGSWSAAGVANQ 438 Query: 363 PITFLKGMQAFVPQTTVAAGCKDVSCDSPDGF----------------------GEAIEA 476 +T L G+Q V K + + G EA++A Sbjct: 439 SVTVLAGIQNAVGDGAKILYAKGANITNDKGIVDFLNLYEEAVKIDPRSPQAMIDEAVQA 498 Query: 477 AKRADIVVVIAGLNLTQESEDLDRVTLLLPGRQQDLVNIIASVTKKPIVLVITGGGPV 650 AK+AD+VV + G + E R + +P Q+DL+ + T KP+VLV+ G P+ Sbjct: 499 AKQADVVVAVVGESQGMAHEASSRTNITIPQSQRDLITAL-KATGKPLVLVLMNGRPL 555
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 77.8 bits (190), Expect = 3e-14 Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 31/238 (13%) Frame = +3 Query: 30 RHTKSAIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGP-------SNVCT 188 ++ I+ GK+ +++ A ++ +V+ +GLF N ++ LGP +N + Sbjct: 326 KYLPGLIKSGKVTMAELDDAARHVLNVKYDMGLF-----NDPYSHLGPKESDPVDTNAES 380 Query: 189 KEHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYT--GVPCD 362 + HR+ A E R+ VLLKN LPLK+S IA++G A+ + G ++ GV Sbjct: 381 RLHRKEAREVARESLVLLKNRLETLPLKKSAT--IAVVGPLADSKRDVMGSWSAAGVADQ 438 Query: 363 PITFLKGMQAFVPQTTVAAGCKDVSCDSPDGF----------------------GEAIEA 476 +T L G++ V + K + S G EA++ Sbjct: 439 SVTVLTGIKNAVGENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQT 498 Query: 477 AKRADIVVVIAGLNLTQESEDLDRVTLLLPGRQQDLVNIIASVTKKPIVLVITGGGPV 650 AK++D+VV + G E R + +P Q+DL+ + T KP+VLV+ G P+ Sbjct: 499 AKQSDVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAAL-KATGKPLVLVLMNGRPL 555
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 72.4 bits (176), Expect = 1e-12 Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 12/216 (5%) Frame = +3 Query: 45 AIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGPSNVCTKEHRELAAEAVR 224 A++ GK+ E +N A+ + V + E EN + + H LA +A Sbjct: 264 AVKSGKLSENILNRAVERILKVIIMA--LENKKENAQYEQ--------DAHHRLARQAAA 313 Query: 225 QGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYTGVPCDPITFLKGMQAFVPQ 404 + VLLKN++ LPLK+S IALIGA ++ Y G IT + + + Sbjct: 314 ESMVLLKNEDDVLPLKKSGT--IALIGA-----FVKKPRYQGSGSSHITPTRLDDIY--E 364 Query: 405 TTVAAGCKDVSCDSPDGF------------GEAIEAAKRADIVVVIAGLNLTQESEDLDR 548 AG V+ +G+ EA +AA +D+ VV AGL ESE DR Sbjct: 365 EIKKAGADKVNLVYSEGYRLENDGIDEELINEAKKAASSSDVAVVFAGLPDEYESEGFDR 424 Query: 549 VTLLLPGRQQDLVNIIASVTKKPIVLVITGGGPVDV 656 + +P Q L+ +A V + IV+V+ G PV++ Sbjct: 425 THMSIPENQNRLIEAVAEV-QSNIVVVLLNGSPVEM 459
>BGLS_AGRTU (P27034) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 818 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/68 (36%), Positives = 45/68 (66%) Frame = +3 Query: 453 GFGEAIEAAKRADIVVVIAGLNLTQESEDLDRVTLLLPGRQQDLVNIIASVTKKPIVLVI 632 G EA+E A+++DIV+++ G ++E LD + LPGRQ++L+ +A T +V+V+ Sbjct: 532 GIAEAVETARKSDIVLLLVGREGEWDTEGLDLPDMRLPGRQEELIEAVAE-TNPNVVVVL 590 Query: 633 TGGGPVDV 656 GGP+++ Sbjct: 591 QTGGPIEM 598 Score = 52.4 bits (124), Expect = 1e-06 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 4/134 (2%) Frame = +3 Query: 42 SAIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGPSNVCTKEHRELAAEAV 221 +A+ +GK++ E + + + + R+G FEKA + L + E R L + Sbjct: 254 AAVREGKVKAETVRASARRILLLLERVGAFEKAPD------LAEHALDLPEDRALIRQLG 307 Query: 222 RQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYTGVPCD-PITFLKGMQAFV 398 +G VLLKND LPL +S IA+IG A A +MGG + ++ L+G++A + Sbjct: 308 AEGAVLLKNDG-VLPLAKSSFDQIAVIGPNAASARVMGGGSARIAAHYTVSPLEGIRAAL 366 Query: 399 PQTTV---AAGCKD 431 A GC + Sbjct: 367 SNANSLRHAVGCNN 380
>YBBD_BACSU (P40406) Hypothetical lipoprotein ybbD precursor (ORF1)| Length = 642 Score = 46.6 bits (109), Expect = 7e-05 Identities = 23/95 (24%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Frame = +3 Query: 24 LIRHTKSAIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGPSN--VCTKEH 197 +I+ K A++ G I E+ IN+++ + S++++ G++ N + ++ + V +K+H Sbjct: 364 VIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQH 423 Query: 198 RELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALI 302 + + + +LKN+ LP K K S I ++ Sbjct: 424 LKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIV 458
>BGLS_HANAN (P06835) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 825 Score = 44.3 bits (103), Expect = 3e-04 Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 27/175 (15%) Frame = +3 Query: 195 HRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYTGVPCDPITF 374 +R +A + +G VLLKN++ LPL R KV I+++G AA D D G C Sbjct: 401 NRAVALRSAVEGVVLLKNEHETLPLGREKVKRISILGQAAGD------DSKGTSCS---- 450 Query: 375 LKGMQAFVPQTTVAAGCKDVS--CDSPDGFG--------------------EAIEAAKRA 488 L+G + T +G S DG G A+++A A Sbjct: 451 LRGCGSGAIGTGYGSGAGTFSYFVTPADGIGARAQQEKISYEFIGDSWNQAAAMDSALYA 510 Query: 489 DIVVVIAGLNLTQESEDL-----DRVTLLLPGRQQDLVNIIASVTKKPIVLVITG 638 D + +A +E D+ D L L L+ I+S+ IV+V +G Sbjct: 511 DAAIEVANSVAGEEIGDVDGNYGDLNNLTLWHNAVPLIKNISSINNNTIVIVTSG 565
>BGLS_BUTFI (P16084) Beta-glucosidase A (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 830 Score = 42.0 bits (97), Expect = 0.002 Identities = 24/61 (39%), Positives = 36/61 (59%) Frame = +3 Query: 168 GPSNVCTKEHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYT 347 G +++H EL+ EA +G VLLKND + LP++ K + +AL G D Y+ GG + Sbjct: 19 GERVTASQKHIELSCEAACEGMVLLKNDRNVLPIR--KGTRVALFGKGVFD-YVKGGGGS 75 Query: 348 G 350 G Sbjct: 76 G 76
>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor| [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase); Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase)] Length = 654 Score = 36.2 bits (82), Expect = 0.091 Identities = 29/97 (29%), Positives = 50/97 (51%) Frame = +3 Query: 45 AIEKGKIQEEDINHALYNLFSVQLRLGLFEKANENQWFTRLGPSNVCTKEHRELAAEAVR 224 A++ GK+ E ++ ++ + + + GLFE+ N V + ++LA + Sbjct: 422 AVQDGKLTEARLDTSVNRILKQKFQTGLFERPYVN---ATQANDIVGRADWQQLADDTQA 478 Query: 225 QGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMG 335 + VLL+N N+ LPL+ K S + L G AAN A +G Sbjct: 479 RSLVLLQN-NNLLPLR--KGSRVWLHGIAANAAQEVG 512
>ALO_NEUCR (Q7SGY1) Putative D-arabinono-1,4-lactone oxidase (EC 1.1.3.37)| (ALO) (L-galactono-gamma-lactone oxidase) Length = 556 Score = 33.9 bits (76), Expect = 0.45 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 9/69 (13%) Frame = +3 Query: 429 DVSCDSP-----DGFGEAIEAAKRADIVVVIAGLNLTQESEDLDRVTLLLPG----RQQD 581 D++C S D F + I +VVV AG+ L Q S++LDR L LP +Q Sbjct: 88 DITCTSSWLVNLDNFNKVISVDHLTGLVVVQAGIRLYQLSDELDRRGLALPSLGSINEQS 147 Query: 582 LVNIIASVT 608 + I++ T Sbjct: 148 IAGAISTGT 156
>BGL1_SACFI (P22506) Beta-glucosidase 1 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 876 Score = 33.9 bits (76), Expect = 0.45 Identities = 22/64 (34%), Positives = 31/64 (48%) Frame = +3 Query: 171 PSNVCTKEHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYTG 350 PSN T++ A + + VLLKN+N+ LP+ K + L G AA G D G Sbjct: 402 PSNDFTED---TALKVAEESIVLLKNENNTLPISPEKAKRLLLSGIAA------GPDPIG 452 Query: 351 VPCD 362 C+ Sbjct: 453 YQCE 456
>BGL2_SACFI (P22507) Beta-glucosidase 2 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 880 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/71 (32%), Positives = 34/71 (47%) Frame = +3 Query: 171 PSNVCTKEHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGGDYTG 350 PSN T++ A + + VLLKN+ + LP+ +KV + L G AA G D G Sbjct: 406 PSNDFTED---TALKVAEESIVLLKNEKNTLPISPNKVRKLLLSGIAA------GPDPKG 456 Query: 351 VPCDPITFLKG 383 C + + G Sbjct: 457 YECSDQSCVDG 467
>AXUD1_HUMAN (Q96S65) Axin-1 up-regulated gene 1 protein (TGF-beta-induced| apoptosis protein 3) (TAIP-3) (URAX1 protein) Length = 589 Score = 31.2 bits (69), Expect = 2.9 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = +3 Query: 357 CDPITF---LKGMQAFVPQTTVAAGCKDVSCDSPDGFGEAIEAAKRADIVVVIAGLNLTQ 527 CDP T L G++ + T GC C++P G E +A + + + L L Q Sbjct: 245 CDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRLQLEQ 304 Query: 528 ESE 536 E+E Sbjct: 305 EAE 307
>VPK2_VARV (P33801) Serine/threonine-protein kinase 2 (EC 2.7.11.1)| Length = 439 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 584 KILLPAWKEKGHSIKIFALLSQVQPGNHNNNISSFSCFN 468 K+ L A+ E+ SIK LLS P N+NI+ + FN Sbjct: 191 KVFLKAFNERKDSIKFVKLLSHFYPAVINSNINVINYFN 229
>VPK2_VACCV (Q89121) Serine/threonine-protein kinase 2 (EC 2.7.11.1) (Vaccinia| protein kinase 2) Length = 439 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 584 KILLPAWKEKGHSIKIFALLSQVQPGNHNNNISSFSCFN 468 K+ L A+ E+ SIK LLS P N+NI+ + FN Sbjct: 191 KVFLKAFNERKDSIKFVKLLSHFYPAVINSNINVINYFN 229
>VPK2_VACCT (Q9JFE5) Serine/threonine-protein kinase 2 (EC 2.7.11.1) (Vaccinia| protein kinase 2) Length = 439 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 584 KILLPAWKEKGHSIKIFALLSQVQPGNHNNNISSFSCFN 468 K+ L A+ E+ SIK LLS P N+NI+ + FN Sbjct: 191 KVFLKAFNERKDSIKFVKLLSHFYPAVINSNINVINYFN 229
>VPK2_VACCC (P21095) Serine/threonine-protein kinase 2 (EC 2.7.11.1) (Vaccinia| protein kinase 2) Length = 439 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 584 KILLPAWKEKGHSIKIFALLSQVQPGNHNNNISSFSCFN 468 K+ L A+ E+ SIK LLS P N+NI+ + FN Sbjct: 191 KVFLKAFNERKDSIKFVKLLSHFYPAVINSNINVINYFN 229
>VPK2_VACCA (O57177) Serine/threonine-protein kinase 2 (EC 2.7.11.1) (Vaccinia| protein kinase 2) Length = 439 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 584 KILLPAWKEKGHSIKIFALLSQVQPGNHNNNISSFSCFN 468 K+ L A+ E+ SIK LLS P N+NI+ + FN Sbjct: 191 KVFLKAFNERKDSIKFVKLLSHFYPAVINSNINVINYFN 229
>VPK2_VACCP (P29884) Serine/threonine-protein kinase 2 (EC 2.7.11.1) (Vaccinia| protein kinase 2) Length = 405 Score = 31.2 bits (69), Expect = 2.9 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 584 KILLPAWKEKGHSIKIFALLSQVQPGNHNNNISSFSCFN 468 K+ L A+ E+ SIK LLS P N+NI+ + FN Sbjct: 158 KVFLKAFNERKDSIKFVKLLSHFYPAVINSNINVINYFN 196
>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 845 Score = 30.0 bits (66), Expect = 6.5 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +3 Query: 186 TKEHRELAAEAVRQGTVLLKNDNSFLPLKRSKVSHIALIGAAANDAYIMGG 338 TKE +L E VLLKN N++L K + H+ IG A GG Sbjct: 306 TKETSDLLREIAADSIVLLKNKNNYLTSKERRQYHV--IGPNAKAKTSSGG 354
>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced| apoptosis protein 3) (TAIP-3) Length = 583 Score = 29.6 bits (65), Expect = 8.5 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Frame = +3 Query: 357 CDPITF---LKGMQAFVPQTTVAAGCKDVSCDSPDGFGEAIEAAKRADIVVVIAGLNLTQ 527 CDP T L G++ + T+ GC C++P+G E + + + + L + Q Sbjct: 245 CDPETCSCSLAGIKCQMDHTSFPCGCCREGCENPNGRVEFNQTRVQTHFIHTLTRLQMEQ 304 Query: 528 ESEDL 542 +E L Sbjct: 305 GAESL 309 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,346,105 Number of Sequences: 219361 Number of extensions: 1811127 Number of successful extensions: 5529 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5518 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
