ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd26i15 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 75.1 bits (183), Expect = 4e-14 Identities = 35/37 (94%), Positives = 36/37 (97%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLES 112 GEVIGVF S+QPSDTDLGAKAPKDVKIQGVWYAQLES Sbjct: 293 GEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 73.2 bits (178), Expect = 2e-13 Identities = 33/37 (89%), Positives = 35/37 (94%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLES 112 GEVIGVF S+QPSDTDLGAK PKDVKIQG+WYAQLES Sbjct: 297 GEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 72.0 bits (175), Expect = 4e-13 Identities = 32/36 (88%), Positives = 35/36 (97%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEVIGVF S+QPSDTDLG+KAPKDVKIQG+WYAQLE Sbjct: 294 GEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 71.6 bits (174), Expect = 5e-13 Identities = 32/36 (88%), Positives = 34/36 (94%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEVIGVF S+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 297 GEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 71.6 bits (174), Expect = 5e-13 Identities = 32/36 (88%), Positives = 34/36 (94%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEVIGVF S+QPSDTDLGAK PKDVKIQG+WYAQLE Sbjct: 294 GEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 70.1 bits (170), Expect = 1e-12 Identities = 32/36 (88%), Positives = 34/36 (94%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEVIGVF S+QPSDTDLGAK PKDVKI+GVWYAQLE Sbjct: 295 GEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 69.7 bits (169), Expect = 2e-12 Identities = 32/36 (88%), Positives = 33/36 (91%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEVIGVF S+QPSDTDLGAK PKDVKIQGVWY QLE Sbjct: 297 GEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 68.9 bits (167), Expect = 3e-12 Identities = 31/36 (86%), Positives = 33/36 (91%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEVIGVF S+QPSDTDLGAK PKDVKIQGVWY Q+E Sbjct: 296 GEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 67.4 bits (163), Expect = 9e-12 Identities = 34/38 (89%), Positives = 35/38 (92%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLESN 115 GEVIGVF SVQPSDTDL +APKDVKIQGVWYAQLESN Sbjct: 290 GEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 63.5 bits (153), Expect = 1e-10 Identities = 26/36 (72%), Positives = 32/36 (88%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GE+ GVF S+QPSDTDLGAK PKD+K+ G+WYAQL+ Sbjct: 256 GEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 62.8 bits (151), Expect = 2e-10 Identities = 26/35 (74%), Positives = 30/35 (85%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQL 106 GE+ GVF S+QPSDTDLGAK PKD+K GVWYAQ+ Sbjct: 300 GEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 62.0 bits (149), Expect = 4e-10 Identities = 26/35 (74%), Positives = 30/35 (85%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQL 106 GE+ GVF S+QPSDTDLGAK PKD+KI G+WY QL Sbjct: 257 GEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 53.5 bits (127), Expect = 1e-07 Identities = 21/38 (55%), Positives = 32/38 (84%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLESN 115 GE+ G+F S QPSDTDLGAK P DVK++G++Y +++++ Sbjct: 236 GEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 53.5 bits (127), Expect = 1e-07 Identities = 23/36 (63%), Positives = 30/36 (83%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GE+ G F S QPSDTDLGA PK+VKI+G++YA++E Sbjct: 238 GEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 52.8 bits (125), Expect = 2e-07 Identities = 23/35 (65%), Positives = 30/35 (85%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQL 106 GE+ GVF S QPSDTDLGAK P +VKI+G++YA++ Sbjct: 237 GEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 47.4 bits (111), Expect = 1e-05 Identities = 20/36 (55%), Positives = 27/36 (75%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GEV GVF ++QPSDTD+G K DVK+ G +Y ++E Sbjct: 238 GEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GE+ G F S Q SD D+GA P +VKIQGV+YA +E Sbjct: 235 GEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/36 (58%), Positives = 26/36 (72%) Frame = +2 Query: 2 GEVIGVFXSVQPSDTDLGAKAPKDVKIQGVWYAQLE 109 GE+ G F S Q SD D+GA P +VKIQGV+YA +E Sbjct: 235 GEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.4 bits (67), Expect = 1.2 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +2 Query: 32 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIPEVK--ILIFCACIR 163 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +2 Query: 32 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIPEVK--ILIFCACIRGLVGGEERIEATMC 205 QP + KD+K++G W +Q + N S E K IL C IR + R+ A C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLCNLIR-----QGRLTAPSC 345 Query: 206 XXVYL 220 V L Sbjct: 346 SEVPL 350
>GR22A_DROME (P58951) Putative gustatory receptor 22a| Length = 394 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = -2 Query: 273 FFFDNRSXNINRSLWFYTRYTHXHIVASILSSPPTNPRMHAQKMSIF 133 F FD+R +NRS W ++ +LS P+ ++ K+ +F Sbjct: 34 FTFDSRKRRLNRSKWLLAYGLVLNLTLLVLSMLPSTDDHNSVKVEVF 80
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%) Frame = -2 Query: 228 FYTRYTHX----HIVASILSSPPTNPRMHAQKMSI 136 FY+++T HI S+ S PP+ +H Q++++ Sbjct: 199 FYSKFTEYLEDFHIWLSLYSQPPSRSYLHTQRLAV 233
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 8.0 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -1 Query: 205 THCCLDSFLSTDQPTYACTKDEYL 134 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,539,851 Number of Sequences: 219361 Number of extensions: 607015 Number of successful extensions: 1491 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1490 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
