ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving pr... 283 1e-73
2ref|NM_193698.1| Oryza sativa (japonica cultivar-group), predic... 165 9e-38
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 165 9e-38
4dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic D... 165 9e-38
5dbj|AK119515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
6dbj|AK119188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
7dbj|AK119163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
8dbj|AK104760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
9dbj|AK104649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
10dbj|AK104080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
11dbj|AK103937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
12dbj|AK103920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
13dbj|AK067715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
14dbj|AK060886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
15gb|AY109341.1| Zea mays CL4601_3 mRNA sequence 135 8e-29
16dbj|D21109.1|RICYK174 Oryza sativa mRNA for oxygen-evolving prot... 84 3e-13
17dbj|AP006108.1| Lotus japonicus genomic DNA, chromosome 4, clone... 48 0.015
18gb|AY456395.1| 'Chlorella' ellipsoidea oxygen-evolving enhancer ... 46 0.058
19dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
20gb|AY071483.1| Drosophila melanogaster RE55321 full insert cDNA 42 0.90
21gb|DQ122908.1| Chlamydomonas incerta chloroplast oxygen-evolving... 42 0.90
22ref|NM_143543.2| Drosophila melanogaster Jonah 99Fi CG18030-RA (... 42 0.90
23ref|NM_143542.1| Drosophila melanogaster Jonah 99Fii CG2229-RA (... 42 0.90
24gb|AY070585.1| Drosophila melanogaster RE68767 full length cDNA 42 0.90
25gb|AY069737.1| Drosophila melanogaster LP05501 full length cDNA 42 0.90
26gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, r... 42 0.90
27gb|AE003774.3| Drosophila melanogaster chromosome 3R, section 11... 42 0.90
28gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequ... 40 3.6
29gb|DQ397575.1| Cenarchaeum symbiosum clone C11D05, complete sequ... 40 3.6
30gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, comple... 40 3.6
31dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.6
32emb|Z11999.1|LE33KOECP L.esculentum mRNA for 33kDa precursor pro... 40 3.6
33dbj|AB043960.2| Bruguiera gymnorrhiza psbO mRNA for oxygen evolv... 40 3.6 
>emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving protein of photosystem II
          Length = 1217

 Score =  283 bits (143), Expect = 1e-73
 Identities = 240/270 (88%), Gaps = 14/270 (5%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| ||||||||||||||||||||||||||||||      |
Sbjct: 894  cggcgaggtgatcggcgtcttcgagagcgtgcagccgtcagacaccgacctcg------a 947

                                                                        
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagtctaactagag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagtctaactagag 1007

                                                                        
Query: 121  cataccagaagtgaagatactc--atcttttgtgcatgcatacgtgggttggtcggtgga 178
            || | ||||||||||||   ||  ||||| ||||||||| ||||||||||| ||||||||
Sbjct: 1008 cagagcagaagtgaagaagatcctatcttgtgtgcatgcgtacgtgggttgatcggtgga 1067

                                                                        
Query: 179  gaggaaagaatcgaggcaacaa--tgtgttngtgngtgtatctagta---taaaaccaga 233
            ||||||| ||||||||||||||  |||||| ||| ||||||||||||   |||| |||| 
Sbjct: 1068 gaggaaacaatcgaggcaacaatgtgtgttggtgtgtgtatctagtaatctaaacccagg 1127

                                          
Query: 234  gtgatcggtttatattntagcttctgttat 263
            ||| |||||||||||| |||||||||||||
Sbjct: 1128 gtg-tcggtttatattttagcttctgttat 1156
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>ref|NM_193698.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 891  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 950

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 951  ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1000
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                            
Query: 1        cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
                |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 17346527 cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 17346586

                                                                  
Query: 61       ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
                || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 17346587 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 17346636
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>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1080D07
          Length = 173856

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1      cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
              |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 112788 cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 112847

                                                                
Query: 61     ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
              || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 112848 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 112897
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>dbj|AK119515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D11, full
            insert sequence
          Length = 1286

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 956  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1015

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1016 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1065
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>dbj|AK119188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G10, full
            insert sequence
          Length = 1217

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 963  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1022

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1023 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1072
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>dbj|AK119163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D09, full
            insert sequence
          Length = 1293

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 963  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1022

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1023 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1072
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>dbj|AK104760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G12, full
            insert sequence
          Length = 1292

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 960  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1019

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1020 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1069
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>dbj|AK104649.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B02, full
            insert sequence
          Length = 1272

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 940  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 999

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1000 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1049
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>dbj|AK104080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A06, full
            insert sequence
          Length = 1159

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 940  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 999

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1000 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1049
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>dbj|AK103937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G02, full
            insert sequence
          Length = 1290

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 960  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1019

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1020 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1069
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>dbj|AK103920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B04, full
            insert sequence
          Length = 1313

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 943  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1002

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1003 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1052
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>dbj|AK067715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119C03, full
            insert sequence
          Length = 1332

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 965  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1024

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1025 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1074
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>dbj|AK060886.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B05, full
            insert sequence
          Length = 1208

 Score =  165 bits (83), Expect = 9e-38
 Identities = 103/110 (93%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct: 960  cggcgaggtgattggcgtcttcgagagcgtgcagccgtcggacacagacctcggcgccaa 1019

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            || ||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1020 ggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctcgagt 1069
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>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence
          Length = 1460

 Score =  135 bits (68), Expect = 8e-29
 Identities = 98/110 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggcgaggtgataggcgtcttcnagagcgtgcagccgtcagacaccgacctcggcgccaa 60
            ||||||||| || ||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct: 1213 cggcgaggtcatcggcgtcttcgagagcgtgcagccgtccgacaccgacctcggggccaa 1272

                                                              
Query: 61   ggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctcgagt 110
            ||||||||||||||||||||||||     | |||||||| ||||||||||
Sbjct: 1273 ggcgcccaaggatgtcaagatccannnnntctggtacgctcagctcgagt 1322
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>dbj|D21109.1|RICYK174 Oryza sativa mRNA for oxygen-evolving protein, partial sequence
          Length = 328

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 50  ctcggcgccaaggcgcccaaggatgtcaagatccagggtgtgtggtacgcgcagctc 106
           |||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 30  ctcggcgcnaaggtgcccaaggatgtcaagatccaaggggtgtggtacgcgcagctc 86
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>dbj|AP006108.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT11O06, TM0194,
             complete sequence
          Length = 108277

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 68    aaggatgtcaagatccagggtgtgtggtacgcgcagctcgagtc 111
             |||||||| ||||||||||| || ||||| || |||||||||||
Sbjct: 66607 aaggatgtgaagatccagggagtttggtatgctcagctcgagtc 66564



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 68    aaggatgtcaagatccagggtgtgtggtacgcgcagctcgagtc 111
             |||||||| ||||||||||| || ||||| || ||||| |||||
Sbjct: 55704 aaggatgtgaagatccagggagtttggtatgctcagcttgagtc 55661
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>gb|AY456395.1| 'Chlorella' ellipsoidea oxygen-evolving enhancer protein 1 mRNA,
           partial cds
          Length = 817

 Score = 46.1 bits (23), Expect = 0.058
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 32  cagccgtcagacaccgacctcggcgccaaggcgcccaaggatgtcaagatc 82
           ||||| || ||||| ||||| ||  ||||||| ||||||||||||||||||
Sbjct: 439 cagccctctgacacagacctggggtccaaggcccccaaggatgtcaagatc 489
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>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0507H06
          Length = 136351

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  gtgtggtacgcgcagctcgagt 110
           ||||||||||||||||||||||
Sbjct: 7   gtgtggtacgcgcagctcgagt 28
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>gb|AY071483.1| Drosophila melanogaster RE55321 full insert cDNA
          Length = 952

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 68  aaggatgtcaagatccagggt 88
           |||||||||||||||||||||
Sbjct: 111 aaggatgtcaagatccagggt 131
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>gb|DQ122908.1| Chlamydomonas incerta chloroplast oxygen-evolving enhancer protein
           1 (Psb1) mRNA, complete cds; nuclear gene for
           chloroplast product
          Length = 1213

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 32  cagccgtcagacaccgacctcggcgccaaggcgcccaagga 72
           ||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 817 cagccctcggacactgacctgggcgccaaggcccccaagga 857
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>ref|NM_143543.2| Drosophila melanogaster Jonah 99Fi CG18030-RA (Jon99Fi), mRNA
          Length = 939

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 68  aaggatgtcaagatccagggt 88
           |||||||||||||||||||||
Sbjct: 111 aaggatgtcaagatccagggt 131
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>ref|NM_143542.1| Drosophila melanogaster Jonah 99Fii CG2229-RA (Jon99Fii), mRNA
          Length = 914

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 68  aaggatgtcaagatccagggt 88
           |||||||||||||||||||||
Sbjct: 111 aaggatgtcaagatccagggt 131
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>gb|AY070585.1| Drosophila melanogaster RE68767 full length cDNA
          Length = 937

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 68  aaggatgtcaagatccagggt 88
           |||||||||||||||||||||
Sbjct: 112 aaggatgtcaagatccagggt 132
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>gb|AY069737.1| Drosophila melanogaster LP05501 full length cDNA
          Length = 4651

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 68   aaggatgtcaagatccagggt 88
            |||||||||||||||||||||
Sbjct: 3812 aaggatgtcaagatccagggt 3832
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>gb|AC008299.5|AC008299 Drosophila melanogaster, chromosome 3R, region 99F4-99F11, BAC clone
             BACR48G16, complete sequence
          Length = 173844

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    aaggatgtcaagatccagggt 88
             |||||||||||||||||||||
Sbjct: 59844 aaggatgtcaagatccagggt 59864



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    aaggatgtcaagatccagggt 88
             |||||||||||||||||||||
Sbjct: 58585 aaggatgtcaagatccagggt 58565
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>gb|AE003774.3| Drosophila melanogaster chromosome 3R, section 112 of 118 of the
             complete sequence
          Length = 239051

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    aaggatgtcaagatccagggt 88
             |||||||||||||||||||||
Sbjct: 57427 aaggatgtcaagatccagggt 57447



 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    aaggatgtcaagatccagggt 88
             |||||||||||||||||||||
Sbjct: 56168 aaggatgtcaagatccagggt 56148
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>gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequence
          Length = 41295

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ccaaggatgtcaagatccag 85
             ||||||||||||||||||||
Sbjct: 19288 ccaaggatgtcaagatccag 19307
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>gb|DQ397575.1| Cenarchaeum symbiosum clone C11D05, complete sequence
          Length = 41867

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ccaaggatgtcaagatccag 85
             ||||||||||||||||||||
Sbjct: 36751 ccaaggatgtcaagatccag 36770
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>gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, complete sequence
          Length = 199954

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    agaggaaagaatcgaggcaa 197
              ||||||||||||||||||||
Sbjct: 120448 agaggaaagaatcgaggcaa 120467
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      ccgacctcggcgccaaggcg 64
               ||||||||||||||||||||
Sbjct: 3379480 ccgacctcggcgccaaggcg 3379461
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>emb|Z11999.1|LE33KOECP L.esculentum mRNA for 33kDa precursor protein of oxygen-evolving
           complex
          Length = 1175

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 65  cccaaggatgtcaagatccagggt 88
           |||||||||||||| |||||||||
Sbjct: 967 cccaaggatgtcaaaatccagggt 990
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>dbj|AB043960.2| Bruguiera gymnorrhiza psbO mRNA for oxygen evolving enhancer
           protein 1 precursor, complete cds
          Length = 1102

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 68  aaggatgtcaagatccaggg 87
           ||||||||||||||||||||
Sbjct: 961 aaggatgtcaagatccaggg 980


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,531,133
Number of Sequences: 3902068
Number of extensions: 1531133
Number of successful extensions: 24800
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24723
Number of HSP's gapped (non-prelim): 75
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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