ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd26i09 |
|---|---|
| Clone Library Name | barley_pub |
>RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 SS+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 66 SSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>RARA_HUMAN (P10276) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 SS+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 66 SSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>RARA_CANFA (Q5FBR4) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 SS+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 66 SSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 32.3 bits (72), Expect = 0.61 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 +S+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 66 TSSEEIVPSPPTPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>RARA_NOTVI (P18514) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 32.3 bits (72), Expect = 0.61 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 +S+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 65 TSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 110
>RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)| Length = 460 Score = 32.3 bits (72), Expect = 0.61 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 +S+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 66 TSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 111
>RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)| Length = 447 Score = 32.0 bits (71), Expect = 0.79 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 +S+ E +P P PPP R++ CQD Y Y + C GC F Sbjct: 58 TSSEEIVPSPPSPPPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 103
>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 31.6 bits (70), Expect = 1.0 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 215 PLPPAAGPVSTFALDRVCRSWLSPPLPKRC---RTLAALLRP 331 PLPPA +ST LD C P LP C R L +LL+P Sbjct: 153 PLPPADCVLSTLCLDAAC-----PDLPTYCRALRNLGSLLKP 189
>OBF1_MOUSE (Q64693) POU domain class 2, associating factor 1 (B-cell-specific| coactivator OBF-1) (OCT binding factor 1) (BOB-1) (BOB1) (OCA-B) Length = 256 Score = 30.8 bits (68), Expect = 1.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +2 Query: 17 HHTRRYVQPCCPSFPSLAASYSNLATYHLSPMATTSSPR 133 + T YVQP CPS+ + S++ TY P+ T +PR Sbjct: 118 YSTDMYVQPVCPSYTVVGP--SSVLTYASPPLITNVTPR 154
>CYAA_PODAN (Q01513) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 2145 Score = 29.6 bits (65), Expect = 3.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +1 Query: 250 RLGPXLPFLAQSSAAEALPDPCRPPPTHRLHLLKIG 357 R+GP L+Q+ +AE L DP R P LL +G Sbjct: 1137 RIGPPTGALSQTPSAEELNDPSRRPSQASSSLLSVG 1172
>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1| precursor (Down syndrome cell adhesion molecule 2) Length = 2053 Score = 29.3 bits (64), Expect = 5.1 Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 1/62 (1%) Frame = +2 Query: 47 CPSFPSLAASYSNLA-TYHLSPMATTSSPRXXXXXXXXXXXXXXXXXXVCPSRLRFKPLP 223 CP P AS NLA TYH T P P R P P Sbjct: 1920 CPVVPPREASIRNLARTYHTQARHLTLDPASKSLGLPHPGAPAAASTATLPQRTLAMPAP 1979 Query: 224 PA 229 PA Sbjct: 1980 PA 1981
>RARG2_BRARE (Q90273) Retinoic acid receptor gamma-2 (RAR-gamma-2) (Fragment)| Length = 367 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 +S+ E +P PPP R++ CQD Y Y + C GC F Sbjct: 55 TSSEEMVPSSPSPPPPPRVYKPCFV---CQDKSSGYHYGVSSCEGCKGF 100
>RARG_BRARE (Q91392) Retinoic acid receptor gamma (RAR-gamma) (ZRAR gamma)| Length = 499 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 Query: 283 SSAAEALPDPCRPPPTHRLHLLKIGKRGCQDYRIPYGYSLQFCSGCHCF 429 +S+ E +P PPP R++ CQD Y Y + C GC F Sbjct: 55 TSSEEMVPSSPSPPPPPRVYKPCFV---CQDKSSGYHYGVSSCEGCKGF 100
>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)| Length = 667 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +2 Query: 188 VCPSRLRFKPLPPAAGPVSTFALDRVCRSWLSPPLPK 298 V PSR R PLPP + + + R+CR + PP PK Sbjct: 616 VPPSRER-PPLPPCEPILPSPRVKRLCRCQMPPPPPK 651 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,263,896 Number of Sequences: 219361 Number of extensions: 775057 Number of successful extensions: 2954 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2847 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2947 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
