ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26h19 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 328 bits (841), Expect = 9e-90 Identities = 162/187 (86%), Positives = 171/187 (91%) Frame = +3 Query: 111 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 290 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 60 Query: 291 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXX 470 RKGRFAKDGLIQYRIVCQQVNVSSLE+VIKHFMQLSNEKAE+A++Q + Sbjct: 61 RKGRFAKDGLIQYRIVCQQVNVSSLEDVIKHFMQLSNEKAEQAKSQVEALEDALDVEDLE 120 Query: 471 XXKRPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 650 KRPEDLMLS+VSGEKGKDRSD+E VTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH Sbjct: 121 ADKRPEDLMLSFVSGEKGKDRSDKEVVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180 Query: 651 KAFQFCK 671 +AFQFCK Sbjct: 181 RAFQFCK 187
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 312 bits (799), Expect = 7e-85 Identities = 154/187 (82%), Positives = 165/187 (88%) Frame = +3 Query: 111 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 290 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+WQK LE+IM KYVELCVD+ Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM 60 Query: 291 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXX 470 R+GRFAKDGLIQYRIVCQQVN++SLEEVIKHFM L+ E+AE ARNQAQ Sbjct: 61 RRGRFAKDGLIQYRIVCQQVNINSLEEVIKHFMHLATERAELARNQAQALEEALDVEDLE 120 Query: 471 XXKRPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 650 KRPEDLMLSYVSGEKGKDRSDRE VTPWFKFLWETYRTVLEILRNNS+LEALYAMTAH Sbjct: 121 ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSRLEALYAMTAH 180 Query: 651 KAFQFCK 671 +AFQFCK Sbjct: 181 RAFQFCK 187
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 306 bits (783), Expect = 5e-83 Identities = 150/187 (80%), Positives = 164/187 (87%) Frame = +3 Query: 111 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 290 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+WQKPLEKIM KY++LCVDL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60 Query: 291 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXX 470 ++GRFAKDGLIQYRIVCQQVNVSSLEEVIKHF+ L+ +KAE+AR+QA Sbjct: 61 KRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQARSQADALEEALDVDDLE 120 Query: 471 XXKRPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 650 ++PEDL LS VSGEKGKDRSDRE VTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH Sbjct: 121 ADRKPEDLQLSIVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180 Query: 651 KAFQFCK 671 KAFQFCK Sbjct: 181 KAFQFCK 187
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 197 bits (502), Expect = 2e-50 Identities = 95/185 (51%), Positives = 133/185 (71%) Frame = +3 Query: 114 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 293 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 294 KGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXXX 473 K AK+GL QY+ +CQQVN+ SLE+V++ +++L+ EK E A+ ++Q Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKLAEEKTEAAKEESQ--QMVLDIEDLDN 120 Query: 474 XKRPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHK 653 + PE ++LS VSGE +DR+DR +TPW KFLWE+YR L++LRNNS++E LY A + Sbjct: 121 IQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQ 180 Query: 654 AFQFC 668 AF+FC Sbjct: 181 AFKFC 185
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 197 bits (500), Expect = 3e-50 Identities = 94/185 (50%), Positives = 133/185 (71%) Frame = +3 Query: 114 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 293 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 294 KGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXXX 473 K AK+GL QY+ +CQQVN+ SLE+V++ +++++ EK E A+ ++Q Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKMAEEKTEAAKEESQ--QMVLDIEDLDN 120 Query: 474 XKRPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHK 653 + PE ++LS VSGE +DR+DR +TPW KFLWE+YR L++LRNNS++E LY A + Sbjct: 121 IQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQ 180 Query: 654 AFQFC 668 AF+FC Sbjct: 181 AFKFC 185
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 179 bits (455), Expect = 5e-45 Identities = 88/182 (48%), Positives = 126/182 (69%), Gaps = 1/182 (0%) Frame = +3 Query: 126 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQK-PLEKIMMKYVELCVDLRKGR 302 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Q LE IMM+++ELCV LRKG+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLRKGK 66 Query: 303 FAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXXXXKR 482 AK+GL Y+ Q +V+++E V+KHF++L+N++ +EA+ +A + Sbjct: 67 IAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQEKADKISVEYVDDLEAT-ET 125 Query: 483 PEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHKAFQ 662 PE +M+S VSG+ K R+DR VTPW KFLW+ YRTVL+ILRNN++LE +Y + A+ AFQ Sbjct: 126 PESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANSAFQ 185 Query: 663 FC 668 FC Sbjct: 186 FC 187
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 173 bits (438), Expect = 5e-43 Identities = 85/183 (46%), Positives = 119/183 (65%) Frame = +3 Query: 120 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKG 299 F KPE ALKRAEELI VG++ AL LHD I ++R++ W E+IM+K++ELCVDL+K Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKKQ 65 Query: 300 RFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXXXXK 479 AKD L QY+ + QQ+NV SLE V+ HF++L+ ++ E+A Q Q Sbjct: 66 HLAKDALFQYKALTQQINVKSLETVVVHFLKLAEQRTEDA--QKQSIEKVEEIGDLDQGD 123 Query: 480 RPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHKAF 659 PE L+L+ VSG +DR DR + PW +FLW++YR LE+LRNN+++E LY + +F Sbjct: 124 VPERLLLAVVSGAAAQDRMDRTVLAPWLRFLWDSYRNCLELLRNNAQVEQLYHTISRHSF 183 Query: 660 QFC 668 FC Sbjct: 184 TFC 186
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 131 bits (330), Expect = 2e-30 Identities = 71/185 (38%), Positives = 108/185 (58%), Gaps = 4/185 (2%) Frame = +3 Query: 126 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKP--LEKIMMKYVELCVDLRKG 299 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P +E ++ K++E+ V+L+KG Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATPSTVEPVVFKFLEIGVELKKG 65 Query: 300 RFAKDGLIQYRIVCQ--QVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXXXXXXXX 473 + KDGL QY+ + Q + S+ V + F+ L K + +A Sbjct: 66 KLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQKQEIDDDLEG 125 Query: 474 XKRPEDLMLSYVSGEKGKDRSDREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHK 653 PE+L++S ++ + E +T W +F WE+YR VL++LRNN+ LE Y+ K Sbjct: 126 GVTPENLLISVYESDQSVAGFNDEAITSWLRFTWESYRAVLDLLRNNALLEITYSGVVKK 185 Query: 654 AFQFC 668 FC Sbjct: 186 TMHFC 190
>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid| antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3060 Score = 31.6 bits (70), Expect = 2.3 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +3 Query: 180 QAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYRIVCQQVNVS 359 QA L+ L D T R Q + ++ + C DL+ + GLI +I+CQ +S Sbjct: 1245 QAVLRGLIDYDTGIRLLETQLMISGLISPELRKCFDLKDAK--SHGLIDEQILCQLKELS 1302 Query: 360 SLEEVI 377 +E+I Sbjct: 1303 KAKEII 1308
>LFTR_CAMJE (Q9PNI5) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)| (L/F-transferase) (Leucyltransferase) (Phenyalanyltransferase) Length = 215 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = +3 Query: 537 DREFVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHKAF 659 D EF+T ++K + Y LE+ NN + +Y + K F Sbjct: 100 DDEFITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVF 140
>Y084_LACAC (Q5FMT8) UPF0247 protein LBA0084| Length = 159 Score = 31.2 bits (69), Expect = 3.0 Identities = 26/91 (28%), Positives = 41/91 (45%) Frame = +3 Query: 276 LCVDLRKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQXXXXXXX 455 +CV K ++ KD + +Y Q +S +V +Q+ +EKA E ++A+ Sbjct: 6 VCVGKLKEKYFKDAIAEY-----QKRLSRFAKVT--IVQVPDEKAPEKFSEAEDEKVKEI 58 Query: 456 XXXXXXXKRPEDLMLSYVSGEKGKDRSDREF 548 K +D YV+ KGK RS EF Sbjct: 59 EGQRILSKI-KDKEYVYVTAIKGKQRSSEEF 88
>IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 254 Score = 30.4 bits (67), Expect = 5.1 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +3 Query: 315 GLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEARNQAQ 434 G +YRIV + + EE++K +Q+ NEKA++ + + + Sbjct: 211 GAPRYRIVVKDKDYKKAEEILKKVVQIVNEKAKKLQVEVE 250
>HISX_CHLCH (Q3AR25) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 30.4 bits (67), Expect = 5.1 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = -3 Query: 483 DACQLQDLRHPEHLPVLVPDSW--LPQLSH 400 DAC + D+ PEHL + V W LP+L H Sbjct: 313 DACAVSDMLAPEHLELHVVQPWDILPKLKH 342
>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase| Length = 880 Score = 30.0 bits (66), Expect = 6.6 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Frame = +3 Query: 123 AKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGR 302 A + K+ E+ + K ++ ++ R K LE I K EL + + K + Sbjct: 201 ANEDELTKKLSEINEISSKLPPIRG-----ELEKVRENVKELESIKGKISELKIQVEKLK 255 Query: 303 FAKDGL------IQYRIVCQQVNVSSLEEVIKHFMQLSNEKAE 413 K GL I+ I ++ +S LEE++K +L ++ E Sbjct: 256 GRKKGLEEKIVQIERSIEEKKAKISELEEIVKDIPKLQEKEKE 298
>HISX_CHRVO (Q7P0F6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 434 Score = 30.0 bits (66), Expect = 6.6 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%) Frame = -3 Query: 483 DACQLQDLRHPEHLPVLV--PDSWLPQLSH 400 +AC++ + PEHL + V PD+ LPQL H Sbjct: 316 EACEISNYIAPEHLELSVADPDALLPQLRH 345
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 29.6 bits (65), Expect = 8.7 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +3 Query: 120 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIM---MKYVELCVDL 290 FAKPE+ + + + +A + LH ++ R + +EK M ++VE C Sbjct: 1005 FAKPESQILESGREQMDDEARAIISKLHKVLRPYLLRRLKADVEKQMPAKYEHVEFCRLS 1064 Query: 291 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQL 395 ++ R DG + + +N + +I MQL Sbjct: 1065 KRQRELYDGFLSRTDTKETLNSGNYLSIINCLMQL 1099
>HISX_PSEAE (Q9HVW9) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 440 Score = 29.6 bits (65), Expect = 8.7 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = -3 Query: 480 ACQLQDLRHPEHLPVLV--PDSWLPQLSH 400 AC + + PEHL + V P+SWLP++ H Sbjct: 323 ACAVANRIAPEHLELSVADPESWLPEIRH 351
>HISX_CHLTE (Q8KEY6) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 428 Score = 29.6 bits (65), Expect = 8.7 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -3 Query: 492 SPPDACQLQDLRHPEHLPVLVPDSW--LPQLSH 400 S +AC++ D+ PEHL + V + W LP L H Sbjct: 310 SMQEACKVSDMIAPEHLELHVDNPWEILPDLRH 342 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,014,525 Number of Sequences: 219361 Number of extensions: 1401995 Number of successful extensions: 4391 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4383 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
