ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26g13 |
|---|---|
| Clone Library Name | barley_pub |
>YA03_SCHPO (Q09676) Hypothetical protein C5H10.03 in chromosome I| Length = 219 Score = 36.2 bits (82), Expect = 0.064 Identities = 24/72 (33%), Positives = 35/72 (48%) Frame = +3 Query: 51 KTVYLXRHAQGLHNAEEEKDVVDYTLPALLDAQLTPLGWSQVDCLREHVAKCGLAKKIEL 230 KTVYL RH Q HN ++D + D LT G Q + L + + + I+ Sbjct: 7 KTVYLIRHGQAQHNVGPDED------HNIRDPVLTSEGIEQCEALAKELESKQI--PIDG 58 Query: 231 VIVXPLMRTLQT 266 ++ P+ RTLQT Sbjct: 59 IVCSPMRRTLQT 70
>RLMB_PSEPK (Q88DE7) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 248 Score = 34.3 bits (77), Expect = 0.24 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Frame = +3 Query: 204 CGLAKKIELVIVXPLMRTLQTAV--GVFGGGSCTDGES-------TSPLLMVEGAENSGR 356 CG A+ I LV V L RTL+ G++ G+ + E T PL+M+ GAE G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQQDLTGPLVMIMGAEGKGM 204 Query: 357 QPIXSLNC 380 + + +C Sbjct: 205 RRLTREHC 212
>RLMB_HAEIN (P44906) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 246 Score = 33.5 bits (75), Expect = 0.42 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT--------AVGVFGGGSCTDGES--TS 317 +Q+ + VA CG A+ + L+ V L RTL+ VG G + T +S T Sbjct: 132 AQLTSIARKVA-CGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTG 190 Query: 318 PLLMVEGAENSGRQPIXSLNCPPFLAL 398 PL +V GAE G + + +C +++ Sbjct: 191 PLALVMGAEGEGMRRLTREHCDQLISI 217
>RLMB_PHOLL (Q7MYU6) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 244 Score = 33.5 bits (75), Expect = 0.42 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCTDGES--TSP 320 +Q++ + VA CG A+ + L+ V L RTL+ VG G T +S T P Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTLYQSKLTGP 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 + +V GAE G + + +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_YERPE (Q8ZIV4) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 246 Score = 31.6 bits (70), Expect = 1.6 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQTA-------VGVFGGGSCT--DGESTSP 320 +Q++ + + VA G A+ + L+ V L RTL+ VG G T + T P Sbjct: 132 AQLNAIAKKVAS-GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHTLYQSKMTGP 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 + +V GAE G + + +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>TR10C_HUMAN (O14798) Tumor necrosis factor receptor superfamily member 10C| precursor (Decoy receptor 1) (DcR1) (Decoy TRAIL receptor without death domain) (TNF-related apoptosis-inducing ligand receptor 3) (TRAIL receptor 3) (TRAIL-R3) (Trail receptor wi Length = 259 Score = 31.6 bits (70), Expect = 1.6 Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Frame = +2 Query: 41 APMQNR--VPGEACPGSSQRGRREGCCRLHFTCAA*CP-THPSGLEPS*LPARACGEMWT 211 AP Q R GE CP S R G C C T+ S EPS P C Sbjct: 40 APQQQRHSFKGEECPAGSHRSEHTGACN---PCTEGVDYTNASNNEPSCFPCTVCKSDQK 96 Query: 212 SKKN*VGYCXPSNEDSADCSGGLWR 286 K + C + + C G +R Sbjct: 97 HKSS----CTMTRDTVCQCKEGTFR 117
>RLMB_ERWCT (Q6D127) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 244 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Frame = +3 Query: 204 CGLAKKIELVIVXPLMRTLQTA-------VGVFGGGSCTDGES--TSPLLMVEGAENSGR 356 CG A+ I ++ V L RT++ VG G T +S T PL +V GAE G Sbjct: 143 CGAAETIPVISVTNLARTMRLLQERNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGM 202 Query: 357 QPIXSLNCPPFLAL 398 + + +C +++ Sbjct: 203 RRLTREHCDELISI 216
>YKM8_YEAST (P36069) Hypothetical 33.8 kDa protein in MYO3-PGM1 intergenic| region Length = 295 Score = 31.2 bits (69), Expect = 2.1 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 15/146 (10%) Frame = +3 Query: 51 KTVYLXRHAQGLHNAE------EEKDVVDYTLPA-----LLDAQLTPLGWSQVDCLREHV 197 K + L RH QG HNA E+ D L LD++LTPLG QV +V Sbjct: 54 KLLILARHGQGYHNAAILRYGMEKWDAYWSLLSGDEHGEWLDSKLTPLGKDQVRRTGSNV 113 Query: 198 AKCGLAKKIELV----IVXPLMRTLQTAVGVFGGGSCTDGESTSPLLMVEGAENSGRQPI 365 +AK++ ++ P+ R L+T + ES +P+L +G + Sbjct: 114 L-LPMAKQLGMLPHVFFSSPMRRCLETFI-----------ESWTPVLAETQELPAGTKIS 161 Query: 366 XSLNCPPFLALEACREQLSVLTSDKR 443 + +E RE L T DKR Sbjct: 162 TRI-------IEGLRETLGSHTCDKR 180
>RLMB_VIBPA (Q87L11) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 247 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 9/74 (12%) Frame = +3 Query: 204 CGLAKKIELVIVXPLMRTLQTA-------VGVFGGGS--CTDGESTSPLLMVEGAENSGR 356 CG A+ + L+ V L RT++T VG G + + T PL +V GAE G Sbjct: 144 CGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPLAIVMGAEGDGM 203 Query: 357 QPIXSLNCPPFLAL 398 + + C + + Sbjct: 204 RRLTRETCDDLIKI 217
>RLMB_PSEAE (Q9HUM8) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 248 Score = 30.8 bits (68), Expect = 2.7 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%) Frame = +3 Query: 204 CGLAKKIELVIVXPLMRTLQTAV--GVFGGGSCTDGEST-------SPLLMVEGAENSGR 356 CG A+ I LV V L RTL+ G++ G+ + + T P ++V GAE G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGM 204 Query: 357 QPIXSLNCPPFLA 395 + + +C FLA Sbjct: 205 RRLTREHC-DFLA 216
>Y525_PSEAE (Q51484) Hypothetical protein PA0525| Length = 612 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -2 Query: 125 SVVYNILLFFRVVKTLGMPXQVHGFASVRGXQ 30 S+V ++LLF ++ LG P ++GF+SVR Q Sbjct: 447 SIVDSLLLFGEALQALGDPFALYGFSSVRRQQ 478
>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1086 Score = 30.4 bits (67), Expect = 3.5 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 14 QRRXSPVSRAPMQNRVPGEACPGSSQRGRREGCCR 118 +RR P P ++R PGEA G S GC R Sbjct: 403 RRRSQPKKSKPEESRSPGEATAGVSTLDEARGCSR 437
>K1849_MOUSE (Q69Z89) Protein KIAA1849| Length = 1099 Score = 30.4 bits (67), Expect = 3.5 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +2 Query: 29 PVSRAPMQNRVPGEACPGSSQRGRREGCCRLHFTCAA*CPTHPSGLEPS 175 PV+ AP PG +RG + G +C P+ P GLEP+ Sbjct: 892 PVTGAPRAQGPPGRQPTRGDRRGSQAGSLHTDSSCMLTPPSTPLGLEPA 940
>SYN_STAAN (P67572) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 396 LEACREQLSVLTSDKRSSXTRYRTLFP------AIDFSLIENDEDVLWGPXVIEPNESA 554 LE C+ +L +L D S + T FP AI+F E +D+ WG P+E+A Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETA 307
>SYN_STAAM (P67571) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 396 LEACREQLSVLTSDKRSSXTRYRTLFP------AIDFSLIENDEDVLWGPXVIEPNESA 554 LE C+ +L +L D S + T FP AI+F E +D+ WG P+E+A Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETA 307
>SYN_STAAC (Q5HFW9) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 30.4 bits (67), Expect = 3.5 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 396 LEACREQLSVLTSDKRSSXTRYRTLFP------AIDFSLIENDEDVLWGPXVIEPNESA 554 LE C+ +L +L D S + T FP AI+F E +D+ WG P+E+A Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETA 307
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.4 bits (67), Expect = 3.5 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -3 Query: 346 FSAPSTISNGDVLSPSVQLPPPKTPTAVCRVLIRGXTITNSIFFASPHFATCSRRQSTWL 167 F+A + S G L+P V + TPT RG T+T S + H AT +T + Sbjct: 3286 FTATPSSSPGTALTPPVWISTTTTPTT------RGSTVTPSSIPGTTHTATVLTTTTTTV 3339 Query: 166 QPRGVSWASSS 134 ++ SSS Sbjct: 3340 ATGSMATPSSS 3350 Score = 30.4 bits (67), Expect = 3.5 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -3 Query: 346 FSAPSTISNGDVLSPSVQLPPPKTPTAVCRVLIRGXTITNSIFFASPHFATCSRRQSTWL 167 F+A + S G L+P V + TPT RG T+T S + H AT +T + Sbjct: 2588 FTATPSSSPGTALTPPVWISTTTTPTT------RGSTVTPSSIPGTTHTATVLTTTTTTV 2641 Query: 166 QPRGVSWASSS 134 ++ SSS Sbjct: 2642 ATGSMATPSSS 2652
>RLMB_PSESM (Q87VK2) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 250 Score = 30.4 bits (67), Expect = 3.5 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Frame = +3 Query: 204 CGLAKKIELVIVXPLMRTLQTAV--GVFGGGSCTDGE-------STSPLLMVEGAENSGR 356 CG A+ I LV V L RTL+ G++ G+ + E T P +++ GAE G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGM 204 Query: 357 QPIXSLNC 380 + + +C Sbjct: 205 RRLTREHC 212
>RLMB_SHIFL (P63180) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.0 bits (66), Expect = 4.6 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCT--DGESTSP 320 +Q++ + VA CG A+ + L+ V L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 L +V GAE G + + +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ECOLI (P63177) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.0 bits (66), Expect = 4.6 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCT--DGESTSP 320 +Q++ + VA CG A+ + L+ V L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 L +V GAE G + + +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ECOL6 (P63178) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.0 bits (66), Expect = 4.6 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCT--DGESTSP 320 +Q++ + VA CG A+ + L+ V L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 L +V GAE G + + +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ECO57 (P63179) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.0 bits (66), Expect = 4.6 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCT--DGESTSP 320 +Q++ + VA CG A+ + L+ V L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 L +V GAE G + + +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>SYN_STAAW (Q8NWP3) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 396 LEACREQLSVLTSDKRSSXTRYRTLFP------AIDFSLIENDEDVLWGPXVIEPNESA 554 LE C+ +L +L D S + T FP AI+F E +D+ WG P+E+A Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKSEGFDDIEWGEDFGAPHETA 307
>SYN_STAAS (Q6G9A8) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 30.0 bits (66), Expect = 4.6 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 396 LEACREQLSVLTSDKRSSXTRYRTLFP------AIDFSLIENDEDVLWGPXVIEPNESA 554 LE C+ +L +L D S + T FP AI+F E +D+ WG P+E+A Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKSEGFDDIEWGEDFGAPHETA 307
>RLMB_SALTY (Q8ZKA2) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 29.6 bits (65), Expect = 6.0 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCTDGESTSP-- 320 +Q++ + VA CG A+ + L+ V L RT++ VG G T +S P Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGR 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 + +V GAE G + + +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_SALTI (Q8Z182) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 29.6 bits (65), Expect = 6.0 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT-------AVGVFGGGSCTDGESTSP-- 320 +Q++ + VA CG A+ + L+ V L RT++ VG G T +S P Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGR 190 Query: 321 LLMVEGAENSGRQPIXSLNCPPFLAL 398 + +V GAE G + + +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_PASMU (Q9CJP3) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 245 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%) Frame = +3 Query: 168 SQVDCLREHVAKCGLAKKIELVIVXPLMRTLQT--------AVGVFGGGSCT--DGESTS 317 +Q+ + VA CG A+ + L+ V L RTL+ VG G + T + T Sbjct: 132 AQLTAIARKVA-CGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTLYQTQLTG 190 Query: 318 PLLMVEGAENSGRQPIXSLNCPPFLAL 398 L +V GAE G + + +C +++ Sbjct: 191 GLALVMGAEGEGMRRLTREHCDQLISI 217
>SYN_STAAR (Q6GGV5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 29.6 bits (65), Expect = 6.0 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 396 LEACREQLSVLTSDKRSSXTRYRTLFP------AIDFSLIENDEDVLWGPXVIEPNESA 554 LE C+ +L +L D S + T FP AI+F E +D+ WG P+E+A Sbjct: 250 LENCKLELKMLERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETA 307
>SNG4_HUMAN (O95473) Synaptogyrin-4| Length = 234 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +3 Query: 387 FLALEACREQLSVLTSDKRSSXTRYRTLFPAIDFSLIENDEDVLW 521 FLA +C L + T + R + TR++T F +DF L VLW Sbjct: 74 FLAFLSCLAFLVLDTQETRIAGTRFKTAFQLLDFILA-----VLW 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,568,216 Number of Sequences: 219361 Number of extensions: 1763704 Number of successful extensions: 4519 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4301 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4512 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
