ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC115040.7| Mus musculus chromosome 7, clone RP24-281E19, com... 42 2.6
2gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 42 2.6
3emb|AL645609.21| Mouse DNA sequence from clone RP23-432O10 on ch... 42 2.6
4gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 2.6
5emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in ... 42 2.6
6emb|AL358293.4|CNS05TE0 Human chromosome 14 DNA sequence BAC R-3... 42 2.6
7emb|AL844561.5| Mouse DNA sequence from clone RP23-214D2 on chro... 42 2.6

>gb|AC115040.7| Mus musculus chromosome 7, clone RP24-281E19, complete sequence
          Length = 172117

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 565   actgcccttgaaatttcctat 585
             |||||||||||||||||||||
Sbjct: 66832 actgcccttgaaatttcctat 66812



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>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 85    aacataaattctaatgcttaaaatggcgt 113
             |||||||||||||||  ||||||||||||
Sbjct: 22489 aacataaattctaatttttaaaatggcgt 22461



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>emb|AL645609.21| Mouse DNA sequence from clone RP23-432O10 on chromosome 11 Contains
            the 5' end of the Spred2 gene for sprouty protein with
            EVH-1 domain 2, related sequence and two CpG islands,
            complete sequence
          Length = 121493

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 696  tgcattctcatttgagccataatct 720
            ||||||||| |||||||||||||||
Sbjct: 2699 tgcattctcttttgagccataatct 2723



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 267     cagcagcgcatcgacgacgac 287
               |||||||||||||||||||||
Sbjct: 3284846 cagcagcgcatcgacgacgac 3284866



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>emb|BX088526.6| Zebrafish DNA sequence from clone CH211-51H9 in linkage group 8, complete
              sequence
          Length = 187161

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 66     ataaaaaccaaactgtccaaa 86
              |||||||||||||||||||||
Sbjct: 174663 ataaaaaccaaactgtccaaa 174643



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>emb|AL358293.4|CNS05TE0 Human chromosome 14 DNA sequence BAC R-398E10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197927

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 483   atcaagaccgtgtggacacaa 503
             |||||||||||||||||||||
Sbjct: 65254 atcaagaccgtgtggacacaa 65234



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>emb|AL844561.5| Mouse DNA sequence from clone RP23-214D2 on chromosome 2, complete
              sequence
          Length = 203361

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 291    atatttcacagctctagcatc 311
              |||||||||||||||||||||
Sbjct: 198145 atatttcacagctctagcatc 198165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,744,677
Number of Sequences: 3902068
Number of extensions: 5744677
Number of successful extensions: 97441
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97407
Number of HSP's gapped (non-prelim): 34
length of query: 753
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 730
effective length of database: 17,143,297,704
effective search space: 12514607323920
effective search space used: 12514607323920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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