ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAIR_MOUSE (Q61645) Protein hairless 31 3.0
2ILVD1_BRAJA (Q89LK8) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (... 29 8.8
3ILVD_XYLFT (Q87F63) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 29 8.8
4ILVD_XYLFA (Q9PH47) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 29 8.8

>HAIR_MOUSE (Q61645) Protein hairless|
          Length = 1182

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -1

Query: 236 PLASQTMLGIASGGSIKQGTEKRSPNPQRQHLTKHRRDRV*PTTSGSTGNGARR 75
           PLA   MLG+A GG ++Q  E   P       + H+RD       G TG G ++
Sbjct: 220 PLAESGMLGLAPGGHLQQACESEGP-------SLHQRD-------GETGAGRQQ 259



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>ILVD1_BRAJA (Q89LK8) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (DAD 1)|
          Length = 616

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -3

Query: 465 LYSLPF*E--ADIHPWKAKAHQISYYILCVVSKDMSRPNLISTSLRIHLPA 319
           LYSLP  E  AD   + A AH  +  ++C+ + D   P ++  +LR+++PA
Sbjct: 91  LYSLPSRELIADSVEYMANAH-CADGLVCISNCDKITPGMLMAALRLNIPA 140



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>ILVD_XYLFT (Q87F63) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 610

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 465 LYSLPF*E--ADIHPWKAKAHQISYYILCVVSKDMSRPNLISTSLRIHLP 322
           LYSLP  E  AD   + A AH  +  ++C+ + D   P ++  SLR+++P
Sbjct: 91  LYSLPSREIIADSVEYMANAH-CADALVCISNCDKITPGMLMASLRLNIP 139



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>ILVD_XYLFA (Q9PH47) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 610

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -3

Query: 465 LYSLPF*E--ADIHPWKAKAHQISYYILCVVSKDMSRPNLISTSLRIHLP 322
           LYSLP  E  AD   + A AH  +  ++C+ + D   P ++  SLR+++P
Sbjct: 91  LYSLPSREIIADSVEYMANAH-CADALVCISNCDKITPGMLMASLRLNIP 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,253,055
Number of Sequences: 219361
Number of extensions: 1593283
Number of successful extensions: 3950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3949
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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