ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26g02 |
|---|---|
| Clone Library Name | barley_pub |
>YA03_SCHPO (Q09676) Hypothetical protein C5H10.03 in chromosome I| Length = 219 Score = 39.3 bits (90), Expect = 0.011 Identities = 25/72 (34%), Positives = 37/72 (51%) Frame = +1 Query: 136 KTVYLVRHAQGLHNAEEEKDVVDYTLPALLDAQLTPLGWSQVDCLREHVAKCGLAKKIEL 315 KTVYL+RH Q HN ++D + D LT G Q + L + + + I+ Sbjct: 7 KTVYLIRHGQAQHNVGPDED------HNIRDPVLTSEGIEQCEALAKELESKQI--PIDG 58 Query: 316 VIVSPLMRTLQT 351 ++ SP+ RTLQT Sbjct: 59 IVCSPMRRTLQT 70
>YKM8_YEAST (P36069) Hypothetical 33.8 kDa protein in MYO3-PGM1 intergenic| region Length = 295 Score = 35.0 bits (79), Expect = 0.20 Identities = 56/201 (27%), Positives = 79/201 (39%), Gaps = 27/201 (13%) Frame = +1 Query: 136 KTVYLVRHAQGLHNAE------EEKDVVDYTLPA-----LLDAQLTPLGWSQVDCLREHV 282 K + L RH QG HNA E+ D L LD++LTPLG QV +V Sbjct: 54 KLLILARHGQGYHNAAILRYGMEKWDAYWSLLSGDEHGEWLDSKLTPLGKDQVRRTGSNV 113 Query: 283 AKCGLAKKIELV----IVSPLMRTLQTAVGVFGGGSCTDGESTSPLLMVEGAENSGRQPI 450 +AK++ ++ SP+ R L+T + ES +P+L E E I Sbjct: 114 L-LPMAKQLGMLPHVFFSSPMRRCLETFI-----------ESWTPVL-AETQELPAGTKI 160 Query: 451 SSLNCPPFLALEACREQLSVLTSDKRSSITRYRTLFPAIDFSLIEN------------DE 594 S+ +E RE L T DKR + + DFS ++ Sbjct: 161 ST------RIIEGLRETLGSHTCDKR--VAHSMAVDEYQDFSTESGHTVHWQYVPDYPED 212 Query: 595 DVLWGPDVIEPNESVAARGMN 657 D LW PD E + R +N Sbjct: 213 DELWLPDHRETCAEMDKRTLN 233
>RLMB_PSEPK (Q88DE7) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 248 Score = 35.0 bits (79), Expect = 0.20 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%) Frame = +1 Query: 289 CGLAKKIELVIVSPLMRTLQTAV--GVFGGGSCTDGES-------TSPLLMVEGAENSGR 441 CG A+ I LV V+ L RTL+ G++ G+ + E T PL+M+ GAE G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIYQQDLTGPLVMIMGAEGKGM 204 Query: 442 QPISSLNC 465 + ++ +C Sbjct: 205 RRLTREHC 212
>RLMB_HAEIN (P44906) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 246 Score = 34.3 bits (77), Expect = 0.35 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 10/87 (11%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT--------AVGVFGGGSCTDGES--TS 402 +Q+ + VA CG A+ + L+ V+ L RTL+ VG G + T +S T Sbjct: 132 AQLTSIARKVA-CGAAETVPLIRVTNLSRTLRDLQQNHNIWVVGTAGEATETIYQSKLTG 190 Query: 403 PLLMVEGAENSGRQPISSLNCPPFLAL 483 PL +V GAE G + ++ +C +++ Sbjct: 191 PLALVMGAEGEGMRRLTREHCDQLISI 217
>RLMB_PHOLL (Q7MYU6) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 244 Score = 34.3 bits (77), Expect = 0.35 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCTDGES--TSP 405 +Q++ + VA CG A+ + L+ V+ L RTL+ VG G T +S T P Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTLRLLQEYNIWVVGTAGEADHTLYQSKLTGP 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 + +V GAE G + ++ +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>SYN_STAAN (P67572) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 33.9 bits (76), Expect = 0.45 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = +1 Query: 481 LEACREQLSVLTSDKRSSITRYRTLFP------AIDFSLIENDEDVLWGPDVIEPNESVA 642 LE C+ +L +L D S + + T FP AI+F E +D+ WG D P+E+ Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAI 308 Query: 643 A 645 A Sbjct: 309 A 309
>SYN_STAAM (P67571) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 33.9 bits (76), Expect = 0.45 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = +1 Query: 481 LEACREQLSVLTSDKRSSITRYRTLFP------AIDFSLIENDEDVLWGPDVIEPNESVA 642 LE C+ +L +L D S + + T FP AI+F E +D+ WG D P+E+ Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAI 308 Query: 643 A 645 A Sbjct: 309 A 309
>SYN_STAAC (Q5HFW9) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 33.9 bits (76), Expect = 0.45 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = +1 Query: 481 LEACREQLSVLTSDKRSSITRYRTLFP------AIDFSLIENDEDVLWGPDVIEPNESVA 642 LE C+ +L +L D S + + T FP AI+F E +D+ WG D P+E+ Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAI 308 Query: 643 A 645 A Sbjct: 309 A 309
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 33.5 bits (75), Expect = 0.59 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 65 APPSPPQEWRRPAPSQPCIPRTDAKPCTW 151 APP PPQ+WR+P P +P +A W Sbjct: 727 APPLPPQDWRKPGPPS-FLPDLNANAAAW 754
>SYN_STAAW (Q8NWP3) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 33.5 bits (75), Expect = 0.59 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = +1 Query: 481 LEACREQLSVLTSDKRSSITRYRTLFP------AIDFSLIENDEDVLWGPDVIEPNESVA 642 LE C+ +L +L D S + + T FP AI+F E +D+ WG D P+E+ Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKSEGFDDIEWGEDFGAPHETAI 308 Query: 643 A 645 A Sbjct: 309 A 309
>SYN_STAAS (Q6G9A8) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 33.5 bits (75), Expect = 0.59 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = +1 Query: 481 LEACREQLSVLTSDKRSSITRYRTLFP------AIDFSLIENDEDVLWGPDVIEPNESVA 642 LE C+ +L +L D S + + T FP AI+F E +D+ WG D P+E+ Sbjct: 250 LENCKLELKILERDT-SKLEKVATPFPRISYDDAIEFLKSEGFDDIEWGEDFGAPHETAI 308 Query: 643 A 645 A Sbjct: 309 A 309
>SYN_STAAR (Q6GGV5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 430 Score = 33.1 bits (74), Expect = 0.77 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = +1 Query: 481 LEACREQLSVLTSDKRSSITRYRTLFP------AIDFSLIENDEDVLWGPDVIEPNESVA 642 LE C+ +L +L D S + + T FP AI+F E +D+ WG D P+E+ Sbjct: 250 LENCKLELKMLERDT-SKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAI 308 Query: 643 A 645 A Sbjct: 309 A 309
>RLMB_YERPE (Q8ZIV4) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 246 Score = 32.3 bits (72), Expect = 1.3 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQTA-------VGVFGGGSCT--DGESTSP 405 +Q++ + + VA G A+ + L+ V+ L RTL+ VG G T + T P Sbjct: 132 AQLNAIAKKVAS-GAAENVPLIKVTNLARTLRVLQEHNVWIVGTAGEADHTLYQSKMTGP 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 + +V GAE G + ++ +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ERWCT (Q6D127) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 244 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 9/74 (12%) Frame = +1 Query: 289 CGLAKKIELVIVSPLMRTLQTA-------VGVFGGGSCTDGES--TSPLLMVEGAENSGR 441 CG A+ I ++ V+ L RT++ VG G T +S T PL +V GAE G Sbjct: 143 CGAAETIPVISVTNLARTMRLLQERNIWIVGTAGEADHTLYQSKLTGPLALVMGAEGEGM 202 Query: 442 QPISSLNCPPFLAL 483 + ++ +C +++ Sbjct: 203 RRLTREHCDELISI 216
>RLMB_VIBPA (Q87L11) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 247 Score = 31.6 bits (70), Expect = 2.2 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Frame = +1 Query: 289 CGLAKKIELVIVSPLMRTLQTA-------VGVFGGGS--CTDGESTSPLLMVEGAENSGR 441 CG A+ + L+ V+ L RT++T VG G + + T PL +V GAE G Sbjct: 144 CGAAEVVPLIRVTNLARTMRTLQEQGIWFVGTAGEATHDIYQAKLTGPLAIVMGAEGDGM 203 Query: 442 QPISSLNCPPFLAL 483 + ++ C + + Sbjct: 204 RRLTRETCDDLIKI 217
>RLMB_PSEAE (Q9HUM8) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 248 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 9/73 (12%) Frame = +1 Query: 289 CGLAKKIELVIVSPLMRTLQTAV--GVFGGGSCTDGEST-------SPLLMVEGAENSGR 441 CG A+ I LV V+ L RTL+ G++ G+ + + T P ++V GAE G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLDLKGPTVLVMGAEGKGM 204 Query: 442 QPISSLNCPPFLA 480 + ++ +C FLA Sbjct: 205 RRLTREHC-DFLA 216
>RLMB_PSESM (Q87VK2) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 250 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Frame = +1 Query: 289 CGLAKKIELVIVSPLMRTLQTAV--GVFGGGSCTDGE-------STSPLLMVEGAENSGR 441 CG A+ I LV V+ L RTL+ G++ G+ + E T P +++ GAE G Sbjct: 145 CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELYQQDLTGPTIIIMGAEGKGM 204 Query: 442 QPISSLNC 465 + ++ +C Sbjct: 205 RRLTREHC 212
>RLMB_CHRVO (Q7NYX3) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 248 Score = 31.2 bits (69), Expect = 2.9 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 18/103 (17%) Frame = +1 Query: 289 CGLAKKIELVIVSPLMRTLQTA--VGVFGGGSCTDG-------ESTSPLLMVEGAENSGR 441 CG A+ + + V+ L RTL+ GV+ G+ + +++ PL V GAE G Sbjct: 144 CGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLYHFDASGPLAWVMGAEGEGM 203 Query: 442 QPISSLNC------PPFLALEACREQLS---VLTSDKRSSITR 543 + ++ +C P F +E+ +S VL+ +R + + Sbjct: 204 RRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQRVLK 246
>TR10C_HUMAN (O14798) Tumor necrosis factor receptor superfamily member 10C| precursor (Decoy receptor 1) (DcR1) (Decoy TRAIL receptor without death domain) (TNF-related apoptosis-inducing ligand receptor 3) (TRAIL receptor 3) (TRAIL-R3) (Trail receptor wi Length = 259 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Frame = +3 Query: 126 APMQNR--VPGEACPGSSQRGRREGCCRLHFTCAA*CP-THPSGLEPS*LPARACGEMWT 296 AP Q R GE CP S R G C C T+ S EPS P C Sbjct: 40 APQQQRHSFKGEECPAGSHRSEHTGACN---PCTEGVDYTNASNNEPSCFPCTVCKSDQK 96 Query: 297 SKKN*VGYCFPSNEDSADCSGGLWR 371 K + C + + C G +R Sbjct: 97 HKSS----CTMTRDTVCQCKEGTFR 117
>RLMB_SHIFL (P63180) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCT--DGESTSP 405 +Q++ + VA CG A+ + L+ V+ L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 L +V GAE G + ++ +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ECOLI (P63177) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCT--DGESTSP 405 +Q++ + VA CG A+ + L+ V+ L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 L +V GAE G + ++ +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ECOL6 (P63178) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCT--DGESTSP 405 +Q++ + VA CG A+ + L+ V+ L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 L +V GAE G + ++ +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_ECO57 (P63179) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.8 bits (68), Expect = 3.8 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCT--DGESTSP 405 +Q++ + VA CG A+ + L+ V+ L RT++ VG G T + T Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGR 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 L +V GAE G + ++ +C +++ Sbjct: 191 LALVMGAEGEGMRRLTREHCDELISI 216
>YEJF_ECOLI (P33916) Hypothetical ABC transporter ATP-binding protein yejF| Length = 529 Score = 30.8 bits (68), Expect = 3.8 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Frame = +1 Query: 157 HAQGLHNAEEEKDVVDYTLPA--LLDAQLTPLGWSQVDCLREHVAKCGLAKKIELVIVSP 330 + Q L N+E D V PA LLD + + + +R+ + K + + + +S Sbjct: 252 YTQKLLNSEPSGDPVPLPEPASTLLDVEQLQVAFP----IRKGILKRIVDHNVVVKNISF 307 Query: 331 LMRTLQTA--VGVFGGGSCTDGESTSPLLMVEGAENSGRQPISSLNCPPFLALEACREQL 504 +R +T VG G G T G + L+ +G+ QP+ +LN L + R ++ Sbjct: 308 TLRAGETLGLVGESGSGKSTTGLALLRLINSQGSIIFDGQPLQNLNRRQLLPI---RHRI 364 Query: 505 SVLTSDKRSSI 537 V+ D SS+ Sbjct: 365 QVVFQDPNSSL 375
>GPMB_YERPE (Q8ZIP0) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 30.8 bits (68), Expect = 3.8 Identities = 24/71 (33%), Positives = 32/71 (45%) Frame = +1 Query: 142 VYLVRHAQGLHNAEEEKDVVDYTLPALLDAQLTPLGWSQVDCLREHVAKCGLAKKIELVI 321 VYLVRH + L NA + D+ LT +G Q + + V G+ +I Sbjct: 4 VYLVRHGETLWNAARR-------IQGQSDSPLTEIGIRQAHLVAQRVRNQGITH----II 52 Query: 322 VSPLMRTLQTA 354 S L RT QTA Sbjct: 53 SSDLGRTQQTA 63
>RLMB_SALTY (Q8ZKA2) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCTDGESTSP-- 405 +Q++ + VA CG A+ + L+ V+ L RT++ VG G T +S P Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGR 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 + +V GAE G + ++ +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_SALTI (Q8Z182) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 243 Score = 30.4 bits (67), Expect = 5.0 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT-------AVGVFGGGSCTDGESTSP-- 405 +Q++ + VA CG A+ + L+ V+ L RT++ VG G T +S P Sbjct: 132 AQLNATAKKVA-CGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMPGR 190 Query: 406 LLMVEGAENSGRQPISSLNCPPFLAL 483 + +V GAE G + ++ +C +++ Sbjct: 191 MALVMGAEGEGMRRLTREHCDELISI 216
>RLMB_PASMU (Q9CJP3) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC| 2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase) Length = 245 Score = 30.4 bits (67), Expect = 5.0 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Frame = +1 Query: 253 SQVDCLREHVAKCGLAKKIELVIVSPLMRTLQT--------AVGVFGGGSCT--DGESTS 402 +Q+ + VA CG A+ + L+ V+ L RTL+ VG G + T + T Sbjct: 132 AQLTAIARKVA-CGAAEVVPLIRVTNLARTLRELQQKHNIWVVGTAGEATNTLYQTQLTG 190 Query: 403 PLLMVEGAENSGRQPISSLNCPPFLAL 483 L +V GAE G + ++ +C +++ Sbjct: 191 GLALVMGAEGEGMRRLTREHCDQLISI 217
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.4 bits (67), Expect = 5.0 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -2 Query: 431 FSAPSTISNGDVLSPSVQLPPPKTPTAVCRVLIRGETITNSIFFASPHFATCSRRQSTWL 252 F+A + S G L+P V + TPT RG T+T S + H AT +T + Sbjct: 3286 FTATPSSSPGTALTPPVWISTTTTPTT------RGSTVTPSSIPGTTHTATVLTTTTTTV 3339 Query: 251 QPRGVSWASSS 219 ++ SSS Sbjct: 3340 ATGSMATPSSS 3350 Score = 30.4 bits (67), Expect = 5.0 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -2 Query: 431 FSAPSTISNGDVLSPSVQLPPPKTPTAVCRVLIRGETITNSIFFASPHFATCSRRQSTWL 252 F+A + S G L+P V + TPT RG T+T S + H AT +T + Sbjct: 2588 FTATPSSSPGTALTPPVWISTTTTPTT------RGSTVTPSSIPGTTHTATVLTTTTTTV 2641 Query: 251 QPRGVSWASSS 219 ++ SSS Sbjct: 2642 ATGSMATPSSS 2652 Score = 29.6 bits (65), Expect = 8.5 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Frame = +3 Query: 132 MQNRVPGEACPGSSQRGRREGCCRLHFTCAA*CPTHPSGLEP----S*LPARACGEMWTS 299 MQ++ G C + +R C H CP + L+ LP C Sbjct: 333 MQHQECGSPCTDTCSNPQRAQLCEDHCVDGCFCPPGSTVLDDITHSGCLPLGQCPCTHGG 392 Query: 300 KKN*VGYCFPSNEDSADCSGGLWR 371 + G F + S CSGGLW+ Sbjct: 393 RTYSPGTSFNTTCSSCTCSGGLWQ 416
>K1849_MOUSE (Q69Z89) Protein KIAA1849| Length = 1099 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +3 Query: 114 PVSRAPMQNRVPGEACPGSSQRGRREGCCRLHFTCAA*CPTHPSGLEPS 260 PV+ AP PG +RG + G +C P+ P GLEP+ Sbjct: 892 PVTGAPRAQGPPGRQPTRGDRRGSQAGSLHTDSSCMLTPPSTPLGLEPA 940
>Y400_SYNY3 (Q55129) Hypothetical protein sll0400| Length = 164 Score = 30.4 bits (67), Expect = 5.0 Identities = 25/89 (28%), Positives = 41/89 (46%) Frame = +1 Query: 142 VYLVRHAQGLHNAEEEKDVVDYTLPALLDAQLTPLGWSQVDCLREHVAKCGLAKKIELVI 321 +YL+RH E+ D+ D D QLT G + + + + G+ + +L++ Sbjct: 3 LYLIRHGIA---QEQSPDIPDG------DRQLTKKGKDKTQRVAQRLQAIGV--EFDLIL 51 Query: 322 VSPLMRTLQTAVGVFGGGSCTDGESTSPL 408 SPL+R QTA + G E+ S L Sbjct: 52 TSPLVRAQQTAQILMDQGLAPQLETFSSL 80
>Y525_PSEAE (Q51484) Hypothetical protein PA0525| Length = 612 Score = 29.6 bits (65), Expect = 8.5 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = -1 Query: 210 SVVYNILLFFRVVKTLGMPHQVHGFASVR 124 S+V ++LLF ++ LG P ++GF+SVR Sbjct: 447 SIVDSLLLFGEALQALGDPFALYGFSSVR 475
>ISPG_PROST (P72241) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 365 Score = 29.6 bits (65), Expect = 8.5 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 5/109 (4%) Frame = +1 Query: 259 VDCLREHVAKCGLAKKIELVIVSPLMRTLQTAVGVFGGGSCTD-----GESTSPLLMVEG 423 VDCLR + G ++I V+ S + +GV GG D GE T P +VE Sbjct: 102 VDCLRINPGNIGSEERIRQVVDSARHHNIPIRIGVNGGSLEKDIQEKYGEPT-PEALVES 160 Query: 424 AENSGRQPISSLNCPPFLALEACREQLSVLTSDKRSSITRYRTLFPAID 570 A + LN F ++SV SD ++ YR L ID Sbjct: 161 AMRH-VDILDRLNFDQF--------KVSVKASDVFLAVGSYRLLAQKID 200
>Y101_NPVOP (P24653) Hypothetical 41.5 kDa protein in P6.5-VP48 intergenic| region (P40) (ORF3) (ORF102) Length = 354 Score = 29.6 bits (65), Expect = 8.5 Identities = 22/84 (26%), Positives = 38/84 (45%) Frame = +1 Query: 181 EEEKDVVDYTLPALLDAQLTPLGWSQVDCLREHVAKCGLAKKIELVIVSPLMRTLQTAVG 360 E + + +TL LL+ TP+ + VD +R A+C SP++R + + Sbjct: 175 EAQVSTLLHTLRTLLEMPTTPIDMTTVDVMRSSFARC---------FASPVLRYAKVVL- 224 Query: 361 VFGGGSCTDGESTSPLLMVEGAEN 432 + G D +T L+VE +N Sbjct: 225 LQGETVSRDERTTLEELLVERGDN 248 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,173,407 Number of Sequences: 219361 Number of extensions: 2175064 Number of successful extensions: 7128 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 6496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7099 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
