>Y4844_ARATH (O49453) Protein At4g28440|
          Length = 153

 Score =  160 bits (406), Expect = 2e-39
 Identities = 78/120 (65%), Positives = 95/120 (79%), Gaps = 3/120 (2%)
 Frame = +3

Query: 78  KRKPVFVKVDQLKPVTSGHTLVAKVLSSKTVL---QKARATGGPGPAAKPTRIAECLIGD 248
           KRKPVFVKV+QLKP T+GHTL  KV+ +  V+   +K R        ++P+RI ECLIGD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 249 ETGCVLFTARNDQVDVLKPGNTVIIRNAKIDMFKGSMRLAVDKWGRVEVTEPASFGVKED 428
           ETGC+LFTARNDQVD++KPG TVI+RN++IDMFKG+MRL VDKWGR+E T  ASF VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

>AT222_EMENI (Q5AVT9) Autophagy-related protein 22-2|
          Length = 593

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 21/130 (16%)
 Frame = -3

Query: 415 PKLAGSVTSTRPHLSTASLIDPLNISIFALRIMTVLPGFNTSTWSLRAVKRTQPVSSPMR 236
           P+ A S TS    LST      + +   A  ++ +L      T S  ++ ++ P + P+R
Sbjct: 250 PEKASSSTSPELQLSTRISSRGVGLGYCAAVLVQILSILLLFTLSKTSMGKSHP-TLPLR 308

Query: 235 HSAILVG-------------LAAGPGPPVA--------RAFWRTVLELSTLATSVWPLVT 119
              +LVG             L + PGPP+         R  WR           VW  V 
Sbjct: 309 FVLLLVGIWWAAFTVVCSRWLRSRPGPPLEGVTPGAGYRQKWR-----------VWLRVV 357

Query: 118 GLSWSTLTNT 89
           G +W +L NT
Sbjct: 358 GFAWKSLWNT 367

>RPOC_CAUCR (Q9AAU1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1396

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 285  QVDVLKPGNTVIIRNAKIDM--FKGSMRLAVDKWGRVEVTEPASFGV 419
            +V++L+PG+T +I+   +D   F      A+ + GR  VT+P   G+
Sbjct: 1259 KVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGI 1305

>TEAD4_MOUSE (Q62296) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (ETF-related factor 2) (ETFR-2)
           (TEF-1-related factor 1) (TEF-1-related factor FR-19)
           (RTEF-1)
          Length = 427

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 298 NTSTWSLRAVKRTQPVSSPMRHSAILVGLAAGPGPPVARAFWRTVL 161
           N +  S+ A+   Q VS+   HS +   LA GPG P    FW+  L
Sbjct: 117 NKALQSMAAMSSAQIVSATAFHSKM--ALARGPGYPAISGFWQGAL 160

>TEAD4_HUMAN (Q15561) Transcriptional enhancer factor TEF-3 (TEA domain family|
           member 4) (TEAD-4) (Transcription factor RTEF-1)
          Length = 427

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 283 SLRAVKRTQPVSSPMRHSAILVGLAAGPGPPVARAFWRTVL 161
           S+ A+   Q +S+   HS++   LA GPG P    FW+  L
Sbjct: 122 SMAAMSSAQIISATAFHSSM--ALARGPGRPAVSGFWQGAL 160

>RR2_PORPU (P51249) Chloroplast 30S ribosomal protein S2|
          Length = 241

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = +3

Query: 99  KVDQLKPVTSGHTLVAKVLSSKTVLQKARATGGPGPAAKPTRIAECL-IGDETGCVLFTA 275
           ++D+L+   +G   + ++     V+ + R T         T I ECL +G  T C+L T 
Sbjct: 140 ELDKLRKHLNGIKNMTRLPDIVVVVDQKRET---------TAIQECLKLGIPTICILDTN 190

Query: 276 RNDQV-DVLKPGNTVIIRNAKIDMFKGSMRLAVDKWGRVEVTE 401
            + ++ ++  P N   IR+ K+ + K +  +   K+G++E TE
Sbjct: 191 CSPEIINIPIPANDDAIRSIKLIIGKIADAIYEGKYGQMEPTE 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,910,424
Number of Sequences: 219361
Number of extensions: 1349610
Number of successful extensions: 3990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3986
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)