ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26f17 |
|---|---|
| Clone Library Name | barley_pub |
>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)| Length = 1267 Score = 127 bits (318), Expect = 4e-29 Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 4/203 (1%) Frame = +3 Query: 33 TNSDGSFFAGPLYEDIGYEVEASKAGYHLKQTGPY--SFACQKLGQILVHIYGEKDTEIL 206 T+ G++ GPL+ D+ Y V + K GY L F L + I E D + L Sbjct: 832 TDDKGAYSVGPLHSDLEYTVTSQKEGYVLTAVEGTIGDFKAYALAGVSFEIKAEDD-QPL 890 Query: 207 PTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNSGES 386 P VLLSLSG G +R N ++ G +F NL P YY + ++KEF+F PS+ I++ G++ Sbjct: 891 PGVLLSLSG-GLFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQN 949 Query: 387 RAVEFRATRVAFSAMGSVTLLTGQPKEGVFVEA--RSESRGYYEEATTDSLGRFRLRGLI 560 + R A+S G+V+ L G+P++GV +EA +++ Y E+ TD G+FRLRGL+ Sbjct: 950 LKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGLL 1009 Query: 561 PGSSYSIRVVAKDNPRLAAVERA 629 PG Y +++ A+ N +ERA Sbjct: 1010 PGCVYHVQLKAEGNDH---IERA 1029 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +3 Query: 204 LPTVLLSLSGEGGYRKNSVSG--SGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNS 377 L L SLS +G R +SG + TF+FDN+ P Y + + +++ + ++ +++ Sbjct: 518 LLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLE 577 Query: 378 GESRAVEFRAT 410 + AVEFR T Sbjct: 578 DDVSAVEFRQT 588
>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)| Length = 1222 Score = 127 bits (318), Expect = 4e-29 Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 4/203 (1%) Frame = +3 Query: 33 TNSDGSFFAGPLYEDIGYEVEASKAGYHLKQTGPY--SFACQKLGQILVHIYGEKDTEIL 206 T+ G++ GPL+ D+ Y V + K GY L F L + I E D + L Sbjct: 832 TDDKGAYSVGPLHSDLEYTVTSQKEGYVLTAVEGTIGDFKAYALAGVSFEIKAEDD-QPL 890 Query: 207 PTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNSGES 386 P VLLSLSG G +R N ++ G +F NL P YY + ++KEF+F PS+ I++ G++ Sbjct: 891 PGVLLSLSG-GLFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQN 949 Query: 387 RAVEFRATRVAFSAMGSVTLLTGQPKEGVFVEA--RSESRGYYEEATTDSLGRFRLRGLI 560 + R A+S G+V+ L G+P++GV +EA +++ Y E+ TD G+FRLRGL+ Sbjct: 950 LKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGLL 1009 Query: 561 PGSSYSIRVVAKDNPRLAAVERA 629 PG Y +++ A+ N +ERA Sbjct: 1010 PGCVYHVQLKAEGNDH---IERA 1029 Score = 37.0 bits (84), Expect = 0.049 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +3 Query: 204 LPTVLLSLSGEGGYRKNSVSG--SGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNS 377 L L SLS +G R +SG + TF+FDN+ P Y + + +++ + ++ +++ Sbjct: 518 LLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLE 577 Query: 378 GESRAVEFRAT 410 + AVEFR T Sbjct: 578 DDVSAVEFRQT 588
>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)| Length = 1222 Score = 127 bits (318), Expect = 4e-29 Identities = 75/203 (36%), Positives = 115/203 (56%), Gaps = 4/203 (1%) Frame = +3 Query: 33 TNSDGSFFAGPLYEDIGYEVEASKAGYHLKQTGPY--SFACQKLGQILVHIYGEKDTEIL 206 T+ G++ GPL+ D+ Y V + K GY L F L + I E D + L Sbjct: 832 TDDKGAYSVGPLHSDLEYTVTSQKEGYVLTAVEGTIGDFKAYALAGVSFEIKAEDD-QPL 890 Query: 207 PTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNSGES 386 P VLLSLSG G +R N ++ G +F NL P YY + ++KEF+F PS+ I++ G++ Sbjct: 891 PGVLLSLSG-GLFRSNLLTQDNGILTFSNLSPGQYYFKPMMKEFRFEPSSQMIEVQEGQN 949 Query: 387 RAVEFRATRVAFSAMGSVTLLTGQPKEGVFVEA--RSESRGYYEEATTDSLGRFRLRGLI 560 + R A+S G+V+ L G+P++GV +EA +++ Y E+ TD G+FRLRGL+ Sbjct: 950 LKITITGYRTAYSCYGTVSSLNGEPEQGVAMEAVGQNDCSIYGEDTVTDEEGKFRLRGLL 1009 Query: 561 PGSSYSIRVVAKDNPRLAAVERA 629 PG Y +++ A+ N +ERA Sbjct: 1010 PGCVYHVQLKAEGNDH---IERA 1029 Score = 37.4 bits (85), Expect = 0.037 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = +3 Query: 204 LPTVLLSLSGEGGYRKNSVSG--SGGTFSFDNLFPRSYYLRALLKEFKFTPSTVAIDLNS 377 L L SLS +G R +SG + TF+FDN+ P Y + + +++ + ++ +++ Sbjct: 518 LLVTLQSLSRQGEKRSLQLSGKVNAMTFTFDNVLPGKYKISIMHEDWCWKNKSLEVEVLE 577 Query: 378 GESRAVEFRAT 410 + AVEFR T Sbjct: 578 DDMSAVEFRQT 588
>BXG_CLOBO (Q60393) Botulinum neurotoxin type G precursor (EC 3.4.24.69)| (BoNT/G) (Bontoxilysin G) [Contains: Botulinum neurotoxin G light chain; Botulinum neurotoxin G heavy chain] Length = 1296 Score = 32.3 bits (72), Expect = 1.2 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = +3 Query: 99 SKAGYHLKQTGPYSFACQKLGQILVHIYGEKDTEILPTVLLSLSGEGGYRKNSVSGSGGT 278 SK HLK + P+ + IL+ ++ + I +LSLS GG R SG G T Sbjct: 830 SKVNRHLKDSIPFDLSLYTKDTILIQVFNNYISNISSNAILSLSYRGG-RLIDSSGYGAT 888 Query: 279 FS 284 + Sbjct: 889 MN 890
>CHSA_EMENI (P30584) Chitin synthase A (EC 2.4.1.16) (Chitin-UDP| acetyl-glucosaminyl transferase A) (Class-II chitin synthase A) Length = 1013 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = +2 Query: 398 VPCNPCCLQCHGFCNT--VNWPTKG 466 +P C LQC+ FCNT V W TKG Sbjct: 798 LPSYICTLQCYAFCNTHDVTWGTKG 822
>DNAJ1_STRCO (P40170) Chaperone protein dnaJ 1| Length = 399 Score = 30.4 bits (67), Expect = 4.6 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 222 SLSGEGGYRKNSVSGSGGTFSFD 290 +L G GG+R +G GGTF+FD Sbjct: 76 ALFGNGGFRPGPGAGGGGTFNFD 98
>RAB7_PEA (P31022) Ras-related protein Rab7| Length = 206 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = +3 Query: 282 SFDNL--FPRSYYLRALLKE---FKFTPSTVAIDLNSGESRAVEFRATRVAFSAMGSVTL 446 SFDNL + + ++A + F F ID++ G SR V + R +A G++ Sbjct: 95 SFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPY 154 Query: 447 LTGQPKEGVFVE 482 KEG+ VE Sbjct: 155 FETSAKEGINVE 166
>PARC_MYCGE (P47446) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase| IV subunit A) Length = 781 Score = 30.0 bits (66), Expect = 6.0 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 117 LKQTGPYSFACQKLGQILVHIYGEKDTEILPTVL-LSLSGEGGYRKNSVSGSGGTFSFDN 293 LK T PY + + +G+I+ + D+ I ++ +S S + + S+ G+ G+ DN Sbjct: 57 LKPTTPYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDN 116 Query: 294 LFPRSY 311 Y Sbjct: 117 AAAMRY 122
>NRCAM_HUMAN (Q92823) Neuronal cell adhesion molecule precursor (Nr-CAM)| (NgCAM-related cell adhesion molecule) (Ng-CAM-related) (hBravo) Length = 1304 Score = 30.0 bits (66), Expect = 6.0 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Frame = +3 Query: 366 DLNSGESRAVEFRATRVAFSAMGSVTLLT----GQPKEGVFVE--ARSESRGYYEEATTD 527 D+ +G+ +AV R + + +A + ++ G +VE + +E Sbjct: 1057 DVGAGKVQAVNTRISNLTAAAAETYANISWEYEGPEHVNFYVEYGVAGSKEEWRKEIVNG 1116 Query: 528 SLGRFRLRGLIPGSSYSIRVVA 593 S F L+GL+PG++Y +RV A Sbjct: 1117 SRSFFGLKGLMPGTAYKVRVGA 1138
>Y1849_AQUAE (O67701) Hypothetical protein aq_1849| Length = 219 Score = 29.6 bits (65), Expect = 7.8 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Frame = +3 Query: 30 KTNSDGSFFAGPLYEDIGYEVEASKAGYHLKQTG----------PYSFACQKLGQILVHI 179 + N +GS F PLYE++ V + G ++ Y+ +KLGQI+ + Sbjct: 71 RQNLEGSVFYSPLYEELRDIVSYIEGGIKNVKSSLEKQLADVHVEYTEVVEKLGQIMEVV 130 Query: 180 YGEKDTEI----LPTVLLSLSGEGGYRKNSVSGSGGTFSFDNLFPRSYYLRALLKEFK 341 K EI LPT L G + S+S DN+ + Y L +K+ K Sbjct: 131 ERLKQGEIEYGALPTGLDPAGALGEILRESLSEIAK--KIDNIKRKIYELDDTIKKVK 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,047,616 Number of Sequences: 219361 Number of extensions: 1425076 Number of successful extensions: 3991 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 3818 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3978 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
