Clone Information

BLAST Search Result

Clone Name	basd26f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein,...	286	3e-77
2	IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein,...	199	7e-51
3	IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplas...	194	2e-49
4	Y617_SYNY3 (Q55707) Hypothetical protein sll0617	107	3e-23
5	PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog	75	1e-13
6	PSPA_SHIFL (P0AFM8) Phage shock protein A	74	5e-13
7	PSPA_ECOLI (P0AFM6) Phage shock protein A	74	5e-13
8	PSPA_ECO57 (P0AFM7) Phage shock protein A	74	5e-13
9	PSPA_BACSU (P54617) Phage shock protein A homolog	63	6e-10
10	LIAH_BACSU (O32201) Protein liaH	52	2e-06
11	MUTS2_BACHD (Q9K8A0) MutS2 protein	38	0.021
12	SAS6_BRARE (Q7ZVT3) Spindle assembly abnormal protein 6 homolog	36	0.080
13	DESM_CHICK (P02542) Desmin	36	0.080
14	RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome recept...	36	0.10
15	RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome recept...	36	0.10
16	POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase ...	35	0.14
17	RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosom...	35	0.14
18	PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)	35	0.23
19	PESC_BRARE (P79741) Pescadillo	35	0.23
20	DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (...	35	0.23
21	CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Chole...	34	0.40
22	DESM_HUMAN (P17661) Desmin	34	0.40
23	DESM_BOVIN (O62654) Desmin	34	0.40
24	DESM_RAT (P48675) Desmin	34	0.40
25	DESM_PIG (P02540) Desmin	34	0.40
26	DESM_MOUSE (P31001) Desmin	34	0.40
27	DESM_MESAU (P02541) Desmin	34	0.40
28	DESM_CANFA (Q5XFN2) Desmin	34	0.40
29	GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (M...	33	0.52
30	HIP1R_MOUSE (Q9JKY5) Huntingtin-interacting protein 1-related pr...	33	0.52
31	DDX27_HUMAN (Q96GQ7) Probable ATP-dependent RNA helicase DDX27 (...	33	0.52
32	RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)	33	0.68
33	FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)	33	0.88
34	FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)	33	0.88
35	GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (G...	33	0.88
36	VIME_CHICK (P09654) Vimentin	32	1.2
37	IF2_PSEHT (Q3IJ53) Translation initiation factor IF-2	32	1.2
38	SUBE_BACSU (P16396) Minor extracellular protease epr precursor (...	32	1.2
39	IVY1_YEAST (Q04934) Protein IVY1 (Interaction with VPS33 and YPT...	32	1.2
40	PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediat...	32	2.0
41	CP46A_MOUSE (Q9WVK8) Cytochrome p450 46A1 (EC 1.14.13.98) (Chole...	32	2.0
42	TMPB_TREPA (P19649) Treponemal membrane protein B precursor (Ant...	32	2.0
43	RMD1_YEAST (Q03441) Sporulation protein RMD1	31	2.6
44	FLIP1_MOUSE (Q9CS72) Filamin-A-interacting protein 1 (FILIP)	31	2.6
45	FLIDP_VIBPA (Q56705) Polar flagellar hook-associated protein 2 (...	31	3.4
46	TUP1_KLULA (P56094) Transcriptional repressor TUP1	31	3.4
47	HOS4_YEAST (P40480) Protein HOS4	31	3.4
48	AMIR_PSEAE (P10932) Aliphatic amidase regulator	31	3.4
49	PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal prot...	31	3.4
50	RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)	30	4.4
51	KIF3C_HUMAN (O14782) Kinesin-like protein KIF3C	30	4.4
52	HN1_HUMAN (Q9UK76) Hematological and neurological expressed 1 pr...	30	4.4
53	KIF3C_RAT (O55165) Kinesin-like protein KIF3C	30	4.4
54	KIF3C_MOUSE (O35066) Kinesin-like protein KIF3C	30	4.4
55	CLPB2_SYNPX (Q7U3T3) Chaperone clpB 2	30	5.7
56	DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein T...	30	5.7
57	MYSA_DROME (P05661) Myosin heavy chain, muscle	30	5.7
58	PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)	30	7.5
59	CS029_HUMAN (Q8WUQ7) Protein C19orf29 (NY-REN-24 antigen)	30	7.5
60	POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase ...	30	7.5
61	KRHB2_HUMAN (Q9NSB4) Keratin, type II cuticular Hb2 (Hair kerati...	30	7.5
62	LAM0_DROME (P08928) Lamin Dm0	30	7.5
63	GATB_FUSNN (Q8R680) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	30	7.5
64	PSA73_DROME (Q27575) Proteasome subunit alpha type 7-1B (EC 3.4....	30	7.5
65	PARC_SALTY (P26973) DNA topoisomerase 4 subunit A (EC 5.99.1.-) ...	30	7.5
66	DDLA_XANCP (Q8PDW3) D-alanine--D-alanine ligase A (EC 6.3.2.4) (...	30	7.5
67	POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase ...	29	9.8
68	RS2_CHRVO (Q7NVZ4) 30S ribosomal protein S2	29	9.8
69	PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated p...	29	9.8

>IM30_ORYSA (Q8S0J7) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 317

 Score =  286 bits (733), Expect = 3e-77
 Identities = 149/168 (88%), Positives = 158/168 (94%), Gaps = 1/168 (0%)
 Frame = +1

Query: 121 MEIRAPPTSLRLATPP-ATASFRPASLRTSFLNGSVSLRAVQVRQSNVNRFKCNAIRSNL 297
           MEIRAPPTSLRLA PP A+ASFR  +LRTSFLNGSVSLR +QVRQSNVNRFKCN IRSNL
Sbjct: 1   MEIRAPPTSLRLAPPPPASASFRRTALRTSFLNGSVSLRLIQVRQSNVNRFKCNGIRSNL 60

Query: 298 FDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKA 477
            DR +R+V+SYANA+LSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKA
Sbjct: 61  LDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKA 120

Query: 478 AEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQLDQQ 621
           AEQA  DWYRRAQLALQKG+EDLAREALKRRKSYA+NASSLKAQLDQQ
Sbjct: 121 AEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQ 168

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>IM30_ARATH (O80796) Probable membrane-associated 30 kDa protein, chloroplast|
           precursor
          Length = 330

 Score =  199 bits (505), Expect = 7e-51
 Identities = 107/170 (62%), Positives = 133/170 (78%), Gaps = 8/170 (4%)
 Frame = +1

Query: 136 PPTSLRLATPPATASFRPASLR-----TSFL-NGSVSLRAVQVRQSNVNRFKCNA--IRS 291
           PP     ++ P+T+S RP SLR     TSF  N S +LR   +R +  NR +CN      
Sbjct: 13  PPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRCNGHGATM 72

Query: 292 NLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 471
           NLF+R +R+V+SYANA++SSFEDPEKIL+Q V+EMN DLTKMRQATAQVLASQK+L+NKY
Sbjct: 73  NLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKY 132

Query: 472 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQLDQQ 621
           KAA+Q+  DWY+RAQLAL KG+EDLAREALKRRKS+A+NA++LK QLDQQ
Sbjct: 133 KAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQ 182

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>IM30_PEA (Q03943) Membrane-associated 30 kDa protein, chloroplast precursor|
           (M30)
          Length = 323

 Score =  194 bits (492), Expect = 2e-49
 Identities = 106/161 (65%), Positives = 125/161 (77%)
 Frame = +1

Query: 139 PTSLRLATPPATASFRPASLRTSFLNGSVSLRAVQVRQSNVNRFKCNAIRSNLFDRLTRL 318
           P+S  L  P AT  F    + T      +  R +++ +  V       +R NLFDR  R+
Sbjct: 18  PSSSLLKKPLATTLFGTRPVDT------LKFRVMRIAKP-VRGGGAIGVRMNLFDRFARV 70

Query: 319 VRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADAD 498
           V+SYANA++S+FEDPEKIL+QAVLEMNDDLTKMRQATAQVLASQKRLENKYKAA+QA  +
Sbjct: 71  VKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEE 130

Query: 499 WYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQLDQQ 621
           WYR+AQLALQKGEEDLAREALKRRKS+A+NASSLKAQLDQQ
Sbjct: 131 WYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQ 171

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>Y617_SYNY3 (Q55707) Hypothetical protein sll0617|
          Length = 267

 Score =  107 bits (267), Expect = 3e-23
 Identities = 54/109 (49%), Positives = 76/109 (69%)
 Frame = +1

Query: 295 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 474
           LFDRL R+VR+  N ++S  EDPEK+L+QAV++M +DL ++RQA A+ +A +KR E +  
Sbjct: 3   LFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLN 62

Query: 475 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQLDQQ 621
              Q    W  RA+LAL  GEE+LAREAL R+KS  + A++ + QL QQ
Sbjct: 63  QDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQ 111

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>PSPA_DEIRA (Q9RUB7) Phage shock protein A homolog|
          Length = 223

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 39/106 (36%), Positives = 64/106 (60%)
 Frame = +1

Query: 292 NLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 471
           ++FDRL+RL+R+  N ++S  EDP KI+DQA+ +M       R   A  +A   +LE + 
Sbjct: 2   SIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREA 61

Query: 472 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQ 609
               +  A++ ++A+ AL+ G EDLAREAL+R +++ + A     Q
Sbjct: 62  GTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQ 107

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>PSPA_SHIFL (P0AFM8) Phage shock protein A|
          Length = 221

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 36/106 (33%), Positives = 62/106 (58%)
 Frame = +1

Query: 295 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 474
           +F R   +V +  NA+L   EDP+K++   + EM D L ++R  +A+ LA +K+L  + +
Sbjct: 2   IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 61

Query: 475 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQL 612
            A   + +W  +A+LAL K  EDLAR AL  ++   +   SL+ ++
Sbjct: 62  QASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEV 107

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>PSPA_ECOLI (P0AFM6) Phage shock protein A|
          Length = 221

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 36/106 (33%), Positives = 62/106 (58%)
 Frame = +1

Query: 295 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 474
           +F R   +V +  NA+L   EDP+K++   + EM D L ++R  +A+ LA +K+L  + +
Sbjct: 2   IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 61

Query: 475 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQL 612
            A   + +W  +A+LAL K  EDLAR AL  ++   +   SL+ ++
Sbjct: 62  QASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEV 107

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>PSPA_ECO57 (P0AFM7) Phage shock protein A|
          Length = 221

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 36/106 (33%), Positives = 62/106 (58%)
 Frame = +1

Query: 295 LFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYK 474
           +F R   +V +  NA+L   EDP+K++   + EM D L ++R  +A+ LA +K+L  + +
Sbjct: 2   IFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIE 61

Query: 475 AAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQL 612
            A   + +W  +A+LAL K  EDLAR AL  ++   +   SL+ ++
Sbjct: 62  QASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEV 107

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>PSPA_BACSU (P54617) Phage shock protein A homolog|
          Length = 226

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 57/105 (54%)
 Frame = +1

Query: 292 NLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKY 471
           ++  R   ++ +  NA+L   E+PEK++DQ +  MN DL K++  TA V+A ++R + +Y
Sbjct: 1   SIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREY 60

Query: 472 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKA 606
              +         A  ALQ G E  AR+ L+R+ S     S L+A
Sbjct: 61  HECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQA 105

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>LIAH_BACSU (O32201) Protein liaH|
          Length = 225

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%)
 Frame = +1

Query: 343 LSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLA 522
           L   E+P+ +L+Q V +M  D+ K +Q   +      + + KY+ A +       +AQLA
Sbjct: 18  LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLA 77

Query: 523 LQKGEEDLAREALKRRKSYAENASSLKAQLDQ 618
              GEE+LA++AL   K     A+  KA  +Q
Sbjct: 78  FDAGEEELAKKALTEMKYLEGKAAEHKASYEQ 109

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>MUTS2_BACHD (Q9K8A0) MutS2 protein|
          Length = 785

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 26/78 (33%), Positives = 44/78 (56%)
 Frame = +1

Query: 322 RSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 501
           RS A AI       EKI++QA   +++D +++    A +  SQK  E+ ++ AE+A  + 
Sbjct: 488 RSNAFAISKRLGLEEKIIEQAKAHIDEDASQVESMIASLEQSQKSAESDWEEAEKALQE- 546

Query: 502 YRRAQLALQKGEEDLARE 555
             + +L LQK  +DL +E
Sbjct: 547 AEQLRLDLQKKLDDLEKE 564

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>SAS6_BRARE (Q7ZVT3) Spindle assembly abnormal protein 6 homolog|
          Length = 627

 Score = 36.2 bits (82), Expect = 0.080
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
 Frame = +1

Query: 277 NAIRSNLFDRLTRL-----------VRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQ 423
           N + +N F  LT L           ++ Y  + LSS ++ ++ L Q + +  +DLT+   
Sbjct: 124 NIVETNAFKHLTHLSLKLLPGSDTDIKKYLASCLSSVKEEKQQLQQKLRKTEEDLTR--- 180

Query: 424 ATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLK 603
              Q+  +Q+ L  K +  ++  ++W  +      +  +DL  E    R+   E  S L+
Sbjct: 181 ---QLNYAQQTLSEKSRELDKLRSEWTSQTTSLSSRHMQDLTAE----REKALETQSRLQ 233

Query: 604 AQLDQ 618
            Q +Q
Sbjct: 234 QQNEQ 238

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>DESM_CHICK (P02542) Desmin|
          Length = 463

 Score = 36.2 bits (82), Expect = 0.080
 Identities = 33/129 (25%), Positives = 59/129 (45%)
 Frame = +1

Query: 235 AVQVRQSNVNRFKCNAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTK 414
           A+ V + N  R K     + +++   R +R   +A+       E   D  +    D+L K
Sbjct: 125 ALMVAEVNRLRGKQPTRVAEMYEEELRELRRQVDALTGQRARVEVERDNLL----DNLQK 180

Query: 415 MRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENAS 594
           ++Q   + +  ++  EN   AA +AD D    A++ L++  E L  E    +K + E   
Sbjct: 181 LKQKLQEEIQLKQEAENNL-AAFRADVDAATLARIDLERRIESLQEEIAFLKKVHEEEIR 239

Query: 595 SLKAQLDQQ 621
            L+AQL +Q
Sbjct: 240 ELQAQLQEQ 248

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>RRBP1_MOUSE (Q99PL5) Ribosome-binding protein 1 (Ribosome receptor protein)|
            (mRRp)
          Length = 1605

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
 Frame = +1

Query: 277  NAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKR 456
            N+I  +  ++ T  V S  N  L+        L Q + ++N +L +  +A+ Q    +K 
Sbjct: 1005 NSILRDALNQATSQVESKQNTELAK-------LRQELSKVNKELVEKSEASRQEEQQRKA 1057

Query: 457  LENKYKAAE----QADADWYRRAQLALQKGEEDLAREALKRRKSYAE-NASSLKAQLDQQ 621
            LE K    E    Q  A  ++ ++ ALQK  E++ RE  + + S+A   A + KAQ  QQ
Sbjct: 1058 LEAKAATFEKQVLQLQAS-HKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQ 1116

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>RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor protein) (180|
            kDa ribosome receptor homolog) (ES/130-related protein)
          Length = 1410

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
 Frame = +1

Query: 277  NAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKR 456
            N+I  +  ++ T  V S  NA L+        L Q + +++ +L +  +A  Q    +K 
Sbjct: 802  NSILRDALNQATSQVESKQNAELAK-------LRQELSKVSKELVEKSEAVRQDEQQRKA 854

Query: 457  LENKYKAAE----QADADWYRRAQLALQKGEEDLAREALKRRKSYAE-NASSLKAQLDQQ 621
            LE K  A E    Q  A  +R ++ ALQK  ++++RE    + S+A   A + KAQ  QQ
Sbjct: 855  LEAKAAAFEKQVLQLQAS-HRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQ 913

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>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3163

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +1

Query: 328  YANAILSSFEDPEK--ILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 501
            Y  AI   +ED  +  +  QA   ++ DLT+           QK+ E + K  E+A+ + 
Sbjct: 2856 YLQAIFEDYEDGVEACVYHQAGETLDADLTE----------EQKQAEKEKKEREKAEKER 2905

Query: 502  YRRAQLALQKGEEDLAREALKRRK 573
             R+ QLA +KG +D+A+E  KR K
Sbjct: 2906 ERQKQLAFKKG-KDVAQEEGKRDK 2928

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>RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome receptor) (RRp)|
          Length = 1534

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
 Frame = +1

Query: 277  NAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKR 456
            N+I  +  ++ T  V S  N  L+        L Q + +++ +L +  +A  Q    +K 
Sbjct: 934  NSILRDALNQATSQVESKQNTELAK-------LRQELSKVSKELVEKSEAARQEEQQRKA 986

Query: 457  LENKYKAAE----QADADWYRRAQLALQKGEEDLAREALKRRKSYAE-NASSLKAQLDQQ 621
            LE K  A E    Q  A  ++ ++ ALQK  ++++RE  + + S+A   A + KAQ  QQ
Sbjct: 987  LETKTAALEKQVLQLQAS-HKESEEALQKRLDEVSRELCRSQTSHASLRADAEKAQEQQQ 1045

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>PLEC1_RAT (P30427) Plectin-1 (PLTN) (PCN)|
          Length = 4687

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
 Frame = +1

Query: 292  NLFDRLTRLVRSYANAILSSFEDPEKILDQAV---------------LEMNDDLTKMRQA 426
            N+ +RL    RS A A   + E+ E+  +QA                L+ + +     QA
Sbjct: 2214 NMLERL----RSEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQAQA 2269

Query: 427  TAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKA 606
             AQ  A + R E + +AA +A A+     Q AL+  ++  A   +++ K +AE     KA
Sbjct: 2270 QAQAAAEKLRKEAEQEAARRAQAE-----QAALK--QKQAADAEMEKHKKFAEQTLRQKA 2322

Query: 607  QLDQQ 621
            Q++Q+
Sbjct: 2323 QVEQE 2327

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>PESC_BRARE (P79741) Pescadillo|
          Length = 582

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +1

Query: 355 EDPEKILDQAVL-EMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQK 531
           ED E+  ++A L EM +  ++ +  + +V   + + EN+ +AAE+  A+  R A + ++K
Sbjct: 479 EDEEEAEEEANLAEMEEKRSQGKSLSVKVTPGKAKAENRARAAEEEKAEEKRLAIMMMKK 538

Query: 532 GEEDLAREALKRRKSYAENASSLKAQ 609
            E+ L  + +  +K     A+ L A+
Sbjct: 539 KEKYLYDKIMFGKKRKVREANKLAAK 564

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>DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)|
           (DEAD box protein 27)
          Length = 760

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
 Frame = +1

Query: 340 ILSSFEDPEKILDQ---AVLEMNDDLTKMRQATAQVLASQKRL-ENKYKAAEQADADWY- 504
           ++  F D  + L++   AVL++  +  +M+Q+ AQ+  +Q+ L + K  A ++ +  W+ 
Sbjct: 561 VILKFRDKIEKLEKDVYAVLQLEAEEKEMQQSEAQIDTAQRLLAKGKETADQEPERSWFQ 620

Query: 505 -----RRAQLALQKGEEDLAREALKRRKSYAENA 591
                ++ ++A    E DLA    K+RK + ++A
Sbjct: 621 TKEERKKEKIAKALQEFDLALRGKKKRKKFMKDA 654

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>CP46A_HUMAN (Q9Y6A2) Cytochrome p450 46A1 (EC 1.14.13.98) (Cholesterol|
           24-hydroxylase) (CH24H)
          Length = 500

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = +1

Query: 364 EKILDQAVLEMNDDLTKMRQATAQVLASQKR----LENKYKAAEQADADWYRRAQLALQK 531
           +K L QAV  M + +T  R   A+ L  +++    +    +   Q   DW +R + AL++
Sbjct: 208 QKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR 267

Query: 532 GEE---DLAREALKRRKSYAENASSL 600
           GEE   D+  + LK  +   ++   L
Sbjct: 268 GEEVPADILTQILKAEEGAQDDEGLL 293

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>DESM_HUMAN (P17661) Desmin|
          Length = 469

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 184 DDLQRLKAKLQEEIQLKEEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 242

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 243 EEEIRELQAQLQEQ 256

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>DESM_BOVIN (O62654) Desmin|
          Length = 469

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 184 DDLQRLKAKLQEEIQLKEEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 242

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 243 EEEIRELQAQLQEQ 256

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>DESM_RAT (P48675) Desmin|
          Length = 468

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 183 DDLQRLKAKLQEEIQLREEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 241

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 242 EEEIRELQAQLQEQ 255

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>DESM_PIG (P02540) Desmin|
          Length = 470

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 185 DDLQRLKAKLQEEIQLKEEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 243

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 244 EEEIRELQAQLQEQ 257

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>DESM_MOUSE (P31001) Desmin|
          Length = 468

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 183 DDLQRLKAKLQEEIQLREEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 241

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 242 EEEIRELQAQLQEQ 255

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>DESM_MESAU (P02541) Desmin|
          Length = 468

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 183 DDLQRLKAKLQEEIQLREEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 241

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 242 EEEIRELQAQLQEQ 255

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>DESM_CANFA (Q5XFN2) Desmin|
          Length = 468

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DDL +++    + +  ++  EN   AA +AD D    A++ L++  E L  E    +K +
Sbjct: 183 DDLQRLKAKLQEEIQLKEEAENNL-AAFRADVDAATLARIDLERRIESLNEEIAFLKKVH 241

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 242 EEEIRELQAQLQEQ 255

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>GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (Male-enhanced|
            antigen 2) (MEA-2)
          Length = 1487

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 23/85 (27%), Positives = 44/85 (51%)
 Frame = +1

Query: 283  IRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLE 462
            ++S  FD+   +  + AN  L   +  E++  +A   + +   KM++  + + ++QK ++
Sbjct: 932  LQSLKFDKEQMIALTEANETLK--KQIEELQQEAKKAITEQKQKMKRLGSDLTSAQKEMK 989

Query: 463  NKYKAAEQADADWYRRAQLALQKGE 537
             K+KA E A +   RR Q AL   E
Sbjct: 990  TKHKAYENAVSILSRRLQEALASKE 1014

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>HIP1R_MOUSE (Q9JKY5) Huntingtin-interacting protein 1-related protein|
           (Hip1-related)
          Length = 1068

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 25/109 (22%), Positives = 58/109 (53%)
 Frame = +1

Query: 289 SNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENK 468
           S L ++ + L+ ++A  +  + +  +++      +  +++ ++++  A  +   KR E++
Sbjct: 448 SKLKEKHSELINTHAELLRKNADTAKQLT--VTQQSQEEVARVKEQLAFQMEQAKR-ESE 504

Query: 469 YKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQLD 615
            K  EQ+D     + +LA + GE   A+EAL R +   ++ S L ++LD
Sbjct: 505 MKMEEQSDQLEKLKRELAARAGELARAQEALSRTE---QSGSELSSRLD 550

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>DDX27_HUMAN (Q96GQ7) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)|
           (DEAD box protein 27)
          Length = 796

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
 Frame = +1

Query: 382 AVLEMNDDLTKMRQATAQVLASQKRLE-NKYKAAEQADADWY------RRAQLALQKGEE 540
           AVL++  +  +M+Q+ AQ+  +++ LE  K    ++ +  W+      ++ ++A    E 
Sbjct: 612 AVLQLEAEEKEMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKALQEF 671

Query: 541 DLAREALKRRKSYAENA 591
           DLA    K+RK + ++A
Sbjct: 672 DLALRGKKKRKKFMKDA 688

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>RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 681

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 19/83 (22%), Positives = 43/83 (51%)
 Frame = +1

Query: 304 RLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAE 483
           R+  L RS+ +   +S  DP+K  D    E N++  K+   + +     ++++  +KA +
Sbjct: 229 RVKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKV--VSEKDKKRVEKVQESFKALD 286

Query: 484 QADADWYRRAQLALQKGEEDLAR 552
           +A  +W +  +  + + E++L R
Sbjct: 287 KAKKEWLKALEAPIDEKEDELVR 309

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>FLIP1_HUMAN (Q7Z7B0) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1213

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +1

Query: 262 NRFKCNAIRSNLFDRLTRLVRSYANAI------LSSFEDPEKILDQAVLEMNDDLTKMRQ 423
           ++ +C  +  NL ++   L +   N +      +   E  E  L++A L + DDLTK++ 
Sbjct: 445 SKSECTQLHLNL-EKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKS 503

Query: 424 ATAQVLASQKRLENKYKAAEQ 486
            T  ++  +K +  K K  E+
Sbjct: 504 FTVMLVDERKNMMEKIKQEER 524

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>FLIP1_RAT (Q8K4T4) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1212

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +1

Query: 262 NRFKCNAIRSNLFDRLTRLVRSYANAI------LSSFEDPEKILDQAVLEMNDDLTKMRQ 423
           ++ +C  +  NL ++   L +   N +      +   E  E  L++A L + DDLTK++ 
Sbjct: 444 SKSECTQLHLNL-EKEKNLTKDLLNELEVVKSRVKELECSESRLEKAELSLKDDLTKLKS 502

Query: 424 ATAQVLASQKRLENKYKAAEQ 486
            T  ++  +K +  K K  E+
Sbjct: 503 FTVMLVDERKNMMEKIKQEER 523

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>GOGA3_HUMAN (Q08378) Golgin subfamily A member 3 (Golgin-160) (Golgi|
            complex-associated protein of 170 kDa) (GCP170)
          Length = 1498

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = +1

Query: 283  IRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLE 462
            ++S  FD+   +  + AN  L   +  E++  +A   + +   KMR+  + + ++QK ++
Sbjct: 936  LQSLQFDKEQMVAVTEANEALK--KQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMK 993

Query: 463  NKYKAAEQADADWYRRAQLALQKGE 537
             K+KA E A     RR Q AL   E
Sbjct: 994  TKHKAYENAVGILSRRLQEALAAKE 1018

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>VIME_CHICK (P09654) Vimentin|
          Length = 459

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = +1

Query: 400 DDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSY 579
           DD+ ++R+   + +  ++  E+  ++  Q D D    A L L++  E L  E +  +K +
Sbjct: 173 DDIMRLREKLQEEMLQREEAESTLQSFRQ-DVDNASLAGLDLERPVESLQEEIVFLKKLH 231

Query: 580 AENASSLKAQLDQQ 621
            E    L+AQL +Q
Sbjct: 232 DEEIRELQAQLQEQ 245

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>IF2_PSEHT (Q3IJ53) Translation initiation factor IF-2|
          Length = 886

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +1

Query: 418 RQATAQVLASQKRLENKYKAAEQADADWYRRAQ-----LALQKGEEDLAREALKRRKSYA 582
           R+A A+  A QK++  +  A  + D     R Q      AL+K EE+  R+A + RK   
Sbjct: 156 RKADAERKAKQKQMTPEQSAKSEKDRIEAERLQKEAEEAALKKAEEEAKRQAEEARKLAE 215

Query: 583 ENASSLKAQLDQQ 621
           EN++  K + +++
Sbjct: 216 ENSARWKKEEEER 228

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>SUBE_BACSU (P16396) Minor extracellular protease epr precursor (EC 3.4.21.-)|
          Length = 645

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 238 VQVRQSNVNRFKCNAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKM 417
           V   QS + +   ++ +++L  RL ++  +       S    EK    A           
Sbjct: 508 VDSAQSAIGKLPASSEKTSLQKRLNKVKSTNLKTAQQSVSAAEKKSTDANAAKAQSAVNQ 567

Query: 418 RQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENA-S 594
            QA     A QKRL+   K    A+A     A+  ++K E+D      K+ K+ A++A +
Sbjct: 568 LQAGKDKTALQKRLDKVKKKVAAAEAKKVETAKAKVKKAEKD----KTKKSKTSAQSAVN 623

Query: 595 SLKA 606
            LKA
Sbjct: 624 QLKA 627

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>IVY1_YEAST (Q04934) Protein IVY1 (Interaction with VPS33 and YPT7 protein 1)|
          Length = 453

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +1

Query: 451 KRLENKYKAAEQADADWYRRAQLALQKGEE-DLAREALKRRKSYAENASSLKAQLDQ 618
           K +ENK+KA  +  +      +L LQ+    D+++  ++   SY E+ SSL+A+LDQ
Sbjct: 198 KIMENKFKAQSKEQS-----LKLKLQERHNFDISKRKIRNLISYRESLSSLQARLDQ 249

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>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
 Frame = +1

Query: 319  VRSYANAILSSFEDPEKILDQAVLE-------------MNDDLTKMRQATAQVLASQKRL 459
            +R  A A   + E+ E+  +QA  E             +     +  QA AQ  A+ ++L
Sbjct: 2005 LRGEAEAARRAAEEAEEAREQAEREAAQSRKQVEEAERLKQSAEEQAQARAQAQAAAEKL 2064

Query: 460  ENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQLDQQ 621
                K AEQ  A   +  Q AL+  ++  A   +++ K +AE     KAQ++Q+
Sbjct: 2065 R---KEAEQEAARRAQAEQAALK--QKQAADAEMEKHKKFAEQTLRQKAQVEQE 2113

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>CP46A_MOUSE (Q9WVK8) Cytochrome p450 46A1 (EC 1.14.13.98) (Cholesterol|
           24-hydroxylase) (CH24H)
          Length = 500

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +1

Query: 364 EKILDQAVLEMNDDLTKMRQATAQVLASQKR----LENKYKAAEQADADWYRRAQLALQK 531
           +K L QAV  M + ++  R   A+ +  +++    +    +   Q   DW +R + AL++
Sbjct: 208 QKPLSQAVKVMLEGISASRNTLAKFMPGKRKQLREIRESIRLLRQVGKDWVQRRREALKR 267

Query: 532 GEEDLAREALKRRKSYAENASSLKAQLD 615
           G ED+  + L +     E A   +  LD
Sbjct: 268 G-EDMPADILTQILKAEEGAQDDEVLLD 294

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>TMPB_TREPA (P19649) Treponemal membrane protein B precursor (Antigen tmpB)|
          Length = 325

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +1

Query: 403 DLTKMRQATAQVLASQKRLENKYKAAEQADADWYR----RAQLALQKGEEDLAREALKRR 570
           D  K  +  +Q+LA   + E   KAAE    +  R    +AQ   ++ EE+ AR+A + R
Sbjct: 140 DALKNVKPESQLLAKAAKEEAARKAAEARKLEEQRIAAQKAQEERKRAEEEAARKAAEAR 199

Query: 571 KSYAENASSLKAQLDQQ 621
           K   +  ++ KAQ +++
Sbjct: 200 KLEEQRIAAQKAQEERK 216

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>RMD1_YEAST (Q03441) Sporulation protein RMD1|
          Length = 430

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 496 QHQLVRQLCTCSRASFEMPRPVQWLAASLLNHHSSPRLPD 377
           +H L R    C+ +S+ M   V+WL      HH+ P+L D
Sbjct: 124 RHLLPRSTAYCTASSYNMKELVRWLKDCRKLHHTHPKLFD 163

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>FLIP1_MOUSE (Q9CS72) Filamin-A-interacting protein 1 (FILIP)|
          Length = 1211

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +1

Query: 262 NRFKCNAIRSNLFDRLTRLVRSYANAI------LSSFEDPEKILDQAVLEMNDDLTKMRQ 423
           ++ +C  +  NL ++   L +   N +      +   E  E  L++  L + DDLTK++ 
Sbjct: 445 SKSECTQLHLNL-EKEKNLTKDLLNELEVVKSRVKELECSESRLEKVELSLKDDLTKLKS 503

Query: 424 ATAQVLASQKRLENKYKAAEQ 486
            T  ++  +K +  K K  E+
Sbjct: 504 FTVMLVDERKNMMEKIKQEER 524

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>FLIDP_VIBPA (Q56705) Polar flagellar hook-associated protein 2 (HAP2) (Filament|
           cap protein) (Flagellar cap protein)
          Length = 670

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
 Frame = +1

Query: 301 DRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLA--------SQKR 456
           +R+     + +  +L S+E+PE  LD+  +E   D+     A +  L         +++ 
Sbjct: 298 ERIPGWTETASGTLLDSYEEPELELDEKAIEKAPDVPGWNNAASGTLTDSYVTTKEAKQL 357

Query: 457 LENKYKAAEQADADWYRRAQLALQKGEEDLAREALKR 567
           LE +    EQ  AD  +     +++GE  L+ E  K+
Sbjct: 358 LEQEKAEIEQKIADEKQELDAKVERGE--LSEEQAKQ 392

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>TUP1_KLULA (P56094) Transcriptional repressor TUP1|
          Length = 682

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +1

Query: 391 EMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLA-LQKGEEDLAREALKR 567
           ++ND L  +RQ  A V  SQ+   N Y+   Q D D+    QLA +Q+    +    L  
Sbjct: 10  KINDLLEAIRQEFANV--SQEA--NSYRLQNQKDYDFKINQQLAEMQQVRNTVYELELTH 65

Query: 568 RK---SYAENASSLKAQLDQQ 621
           RK   +Y E  S LK +L+Q+
Sbjct: 66  RKMKDAYEEEISRLKLELEQK 86

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>HOS4_YEAST (P40480) Protein HOS4|
          Length = 1083

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +1

Query: 322 RSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 501
           R  A   +   ED  ++L+ A  + N+D       T+    S+KRL++      Q   DW
Sbjct: 696 RRSATPRIEDEEDDTRMLNLADDDFNNDRDVKESTTSD---SRKRLDDNENVGTQYSLDW 752

Query: 502 YRRAQLALQKGEE 540
            +R   ALQ  E+
Sbjct: 753 KKRKTNALQDEEK 765

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>AMIR_PSEAE (P10932) Aliphatic amidase regulator|
          Length = 196

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
 Frame = +1

Query: 307 LTRLVRSYANAILSSFEDPEKILDQAVL--EMNDDLTKMRQATAQV---LASQKRLENKY 471
           L++++    + +++   D  ++L   V    +++++ K++Q T Q+   +A Q R+ N+ 
Sbjct: 94  LSQIIELECHGVITQPLDAHRVLPVLVSARRISEEMAKLKQKTEQLQERIAGQARI-NQA 152

Query: 472 KAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSL 600
           KA       W  R      +  + L+REA+KRR+   + A  L
Sbjct: 153 KALLMQRHGWDER------EAHQYLSREAMKRREPILKIAQEL 189

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>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 21/67 (31%), Positives = 37/67 (55%)
 Frame = +1

Query: 421  QATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSL 600
            +A AQ  A + R E + +AA +A A+     Q AL+  ++  A   +++ K +AE     
Sbjct: 2265 RAQAQAAAEKLRKEAEQEAARRAQAE-----QAALR--QKQAADAEMEKHKKFAEQTLRQ 2317

Query: 601  KAQLDQQ 621
            KAQ++Q+
Sbjct: 2318 KAQVEQE 2324

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>RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 671

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 18/83 (21%), Positives = 42/83 (50%)
 Frame = +1

Query: 304 RLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAE 483
           R+  L RS+ +   +S  D +K  D    E N++  K+   + +     ++++  +KA +
Sbjct: 219 RVKELFRSFDDDDENSVSDSKKDEDNEEDEENEERKKV--VSEKDKKRVEKVQESFKALD 276

Query: 484 QADADWYRRAQLALQKGEEDLAR 552
           +A  +W +  +  + + E++L R
Sbjct: 277 KAKKEWLKALEAPIDEREDELVR 299

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>KIF3C_HUMAN (O14782) Kinesin-like protein KIF3C|
          Length = 793

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +1

Query: 355 EDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKG 534
           E+ +K+L++   +M +DL + +QAT  + A  K +E+K     +   D     Q  L+  
Sbjct: 484 EEKQKLLEEKE-KMLEDLRREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELK 542

Query: 535 EEDLAREALKRRKSYAE 585
            +++A +  + R+   E
Sbjct: 543 RQEIAEQKRREREMQQE 559

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>HN1_HUMAN (Q9UK76) Hematological and neurological expressed 1 protein|
           (Androgen-regulated protein 2)
          Length = 154

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 421 QATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKS 576
           + T Q +   K   N +   E+  A W + A      G EDL    L+RR S
Sbjct: 36  EPTEQPVRKNKMASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNS 87

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>KIF3C_RAT (O55165) Kinesin-like protein KIF3C|
          Length = 796

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +1

Query: 355 EDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKG 534
           E+ +K+L++   +M +DL + +QAT  + A  K +E+K     +   D     Q  L+  
Sbjct: 486 EEKQKLLEEKE-KMLEDLKREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELK 544

Query: 535 EEDLAREALKRRKSYAE 585
            +++A +  + R+   E
Sbjct: 545 RQEIAEQKRREREMQQE 561

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>KIF3C_MOUSE (O35066) Kinesin-like protein KIF3C|
          Length = 796

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/77 (24%), Positives = 39/77 (50%)
 Frame = +1

Query: 355 EDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKG 534
           E+ +K+L++   +M +DL + +QAT  + A  K +E+K     +   D     Q  L+  
Sbjct: 486 EEKQKLLEEKE-KMLEDLRREQQATELLAAKYKAMESKLLIGGRNIMDHTNEQQKMLELK 544

Query: 535 EEDLAREALKRRKSYAE 585
            +++A +  + R+   E
Sbjct: 545 RQEIAEQKRREREMQQE 561

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>CLPB2_SYNPX (Q7U3T3) Chaperone clpB 2|
          Length = 900

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +1

Query: 370 ILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLA 549
           ++D+A  ++  ++T   Q   +  A  +R+E    AAE+A  +   R QL  Q+ E    
Sbjct: 429 LIDEAAAQLKIEVTSKPQVVEEAEADLRRVELALLAAEEAPEE--ERIQLQRQRLEVSSR 486

Query: 550 REALKRRKSYAENASSLKAQLDQQ 621
            + L+RR            QL QQ
Sbjct: 487 LDDLRRRWQEERTQLEELGQLLQQ 510

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>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)|
          Length = 1577

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/79 (27%), Positives = 38/79 (48%)
 Frame = +1

Query: 259  VNRFKCNAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQV 438
            V+R+  + + +N  +R  RLV S  N +LS F  P K++ +   ++ D      +  A+ 
Sbjct: 1083 VHRYISDQLFTNFKERTERLVISPLNQLLSMFTGPHKLVQKRFDKLLDFYNCTER--AEK 1140

Query: 439  LASQKRLENKYKAAEQADA 495
            L  +K LE    A    +A
Sbjct: 1141 LKDKKTLEELQSARNNYEA 1159

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>MYSA_DROME (P05661) Myosin heavy chain, muscle|
          Length = 1962

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 26/122 (21%)
 Frame = +1

Query: 331  ANAILSSFEDPEKILDQA----------VLEMNDDLTKMRQATAQVLASQKRLENKYK-- 474
            ANA+ +  E+   +L+QA          + + ++ L ++    A + A++++LE++ +  
Sbjct: 1677 ANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTL 1736

Query: 475  -------------AAEQADADWYRRAQLALQ-KGEEDLAREALKRRKSYAENASSLKAQL 612
                         + E+A       A+LA + + E+D A+   K RK+  +    L+ +L
Sbjct: 1737 HSDLDELLNEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRL 1796

Query: 613  DQ 618
            D+
Sbjct: 1797 DE 1798

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>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 7/111 (6%)
 Frame = +1

Query: 142  TSLRLATPPATASFRPASLRTSFLNGSVSL-------RAVQVRQSNVNRFKCNAIRSNLF 300
            T L   +PP+ +  R  S  +   + S+ L       +  Q  Q + +  K     +   
Sbjct: 1042 TVLSTGSPPSESPSRTGSAASGSSDSSIYLTSSVYSSKISQNGQQSQDVQKKETFPNVAE 1101

Query: 301  DRLTRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQK 453
            + + R++R     IL +++ PE++ +  + E  + L  MRQ   Q    QK
Sbjct: 1102 EPIWRMIRQTPERILMTYQVPERVKEVVLKEDLEKLESMRQQQPQFSHGQK 1152

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>CS029_HUMAN (Q8WUQ7) Protein C19orf29 (NY-REN-24 antigen)|
          Length = 690

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 23/84 (27%), Positives = 45/84 (53%)
 Frame = +1

Query: 328 YANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYR 507
           Y+  +L++ E P   LD  VLE ++DL +++        S+++L+    A+E A+  ++R
Sbjct: 491 YSPRLLTAHELP---LDAHVLEPDEDLQRLQ-------LSRQQLQVTGDASESAEDIFFR 540

Query: 508 RAQLALQKGEEDLAREALKRRKSY 579
           RA+  + + E   + E     K+Y
Sbjct: 541 RAKEGMGQDEAQFSVEMPLTGKAY 564

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>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3066

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 385 VLEMNDDLTKMRQATAQVLASQKRL-ENKYKAAEQADADWYRRAQLALQKGEEDLAREAL 561
           V++  + L K ++A  Q +  Q+RL  NK+ + +     W+  A L  + G    A  A+
Sbjct: 55  VIKHEEALRKFQEAFDQDVGIQRRLLVNKHSSIQSTKEGWFDLASLNFRAGSSKEA--AI 112

Query: 562 KRRKSYAENASSLKAQLDQQ 621
            RRK   E    L  + +QQ
Sbjct: 113 ARRKQ--EEEDFLNGKYEQQ 130

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>KRHB2_HUMAN (Q9NSB4) Keratin, type II cuticular Hb2 (Hair keratin, type II Hb2)|
          Length = 513

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +1

Query: 385 VLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQL-------ALQKGEED 543
           +LEMN  + +++Q T  V A + +LE     AEQ        A+        ALQK ++D
Sbjct: 336 ILEMNKLIQRLQQETENVKAQRCKLEGAIAEAEQQGEAALNDAKCKLAGLEEALQKAKQD 395

Query: 544 LA 549
           +A
Sbjct: 396 MA 397

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>LAM0_DROME (P08928) Lamin Dm0|
          Length = 622

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
 Frame = +1

Query: 229 LRAVQVRQSNVNRFKCNAIRSNLFDRLTRLVRSYANAILSSFEDPEKILDQAVL--EMND 402
           LRA    Q  +NR   + I+S   D++ RL  + A    S+ +  E++    V    +N 
Sbjct: 271 LRAQYEEQMQINR---DEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNA 327

Query: 403 DLTKMRQATAQVLASQKRLENKYKAAEQADADWYRRAQ-LALQKGEEDLAREALKRRKSY 579
           ++ ++ QA A + A  + LE       Q D D  R  Q + L + E    RE + ++   
Sbjct: 328 NINELEQANADLNARIRDLE------RQLDNDRERHGQEIDLLEKELIRLREEMTQQLKE 381

Query: 580 AENASSLKAQLD 615
            ++   +K  LD
Sbjct: 382 YQDLMDIKVSLD 393

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>GATB_FUSNN (Q8R680) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 481

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +1

Query: 310 TRLVRSYANAILSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQ 486
           +++ +      L    DPE I+ +  L    D +++ +   +VLA+ +++ + YK+A++
Sbjct: 387 SKIAKEVFEIALDDSRDPEIIVKEKGLVQLSDTSEIEKMVDEVLANNQKMVDDYKSADE 445

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>PSA73_DROME (Q27575) Proteasome subunit alpha type 7-1B (EC 3.4.25.1)|
           (Testis-specific proteasome 28 kDa subunit 1B)
           (Testis-specific alpha4-t2 proteasome subunit)
          Length = 252

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 257 FDWRTCTARRETLPLRKEVLREAGRKLAVAGGVASLRLVGGALISIDS 114
           ++WR  T  R + P+R  + + A   L +A   A+++ +   L+S+ S
Sbjct: 156 YEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTLVSVSS 203

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>PARC_SALTY (P26973) DNA topoisomerase 4 subunit A (EC 5.99.1.-) (Topoisomerase|
           IV subunit A)
          Length = 752

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 367 KILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADWY 504
           K+ +  +    D+L K R     +LAS++++    K   QADAD Y
Sbjct: 427 KLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAY 472

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>DDLA_XANCP (Q8PDW3) D-alanine--D-alanine ligase A (EC 6.3.2.4)|
           (D-alanylalanine synthetase A) (D-Ala-D-Ala ligase A)
          Length = 373

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
 Frame = -2

Query: 200 LREAGRKLAVAGGVASLRL----VGGALISID---------SGRSGGPDGEERNPGAPVV 60
           LR +GR LAV  G AS +L       AL  ID          G  G   G  R    P V
Sbjct: 74  LRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFV 133

Query: 59  GDGIVGA 39
           G G++G+
Sbjct: 134 GSGVLGS 140

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>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3164

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +1

Query: 328  YANAILSSFEDPEK--ILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQADADW 501
            Y  AI   +ED  +  +  QA   ++  LT            QK+ E + K  E+A+ + 
Sbjct: 2857 YLQAIFEDYEDGTEACVYHQAGETLDAGLTD----------EQKQAEKEKKEREKAEKER 2906

Query: 502  YRRAQLALQKGEEDLARE 555
             R+ QLAL+KG+     E
Sbjct: 2907 ERQRQLALKKGKNAAQEE 2924

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>RS2_CHRVO (Q7NVZ4) 30S ribosomal protein S2|
          Length = 243

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 233 RRETLPLRKEVLREAGRKLAVAGGVASLRLVGGALISIDSGRSGGPDGEERNPGAPVVG 57
           ++E L L++EV  +  R L   GG+  ++ +  A+  ID+G   G   E +  G PV+G
Sbjct: 132 KKELLDLQREV-EKLERSL---GGIKDMKGLPDAIFVIDTGYQKGTIVEAKKLGIPVIG 186

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>PUMA_PARUN (O61308) 227 kDa spindle- and centromere-associated protein (PUMA1)|
          Length = 1955

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +1

Query: 439  LASQKRLENKYKAAEQADADWYRRAQLALQKGEEDLAREALKRRKSYAENASSLKAQL 612
            LASQ ++     A  + DA+  +R  L  ++ EEDL R  +++ +   EN   L++QL
Sbjct: 1495 LASQLQISETKNADLRDDAERLKRDLLKAERVEEDLRRNLVEQTEIMREN-QQLRSQL 1551


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.126    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,226,152
Number of Sequences: 219361
Number of extensions: 1563562
Number of successful extensions: 6801
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 6230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6783
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result