ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26f06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081J06, full insert sequence Length = 1306 Score = 537 bits (271), Expect = e-149 Identities = 450/509 (88%), Gaps = 3/509 (0%) Strand = Plus / Plus Query: 115 gaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gcc 171 |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| Sbjct: 56 gaatcgatggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcc 115 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcgtttctctt 231 | ||||||||||||| | || | |||||||||||||||||||||||||||||||| ||| Sbjct: 116 tccgccagcttccgccggaccgcgctcaggacctccttcctcaacggcagcgtttcactt 175 Query: 232 cgagctgtgcaagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagt 291 || | | ||||| |||||||||||||||||||| ||||||||||| | |||| | ||| Sbjct: 176 agacttattcaagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagt 235 Query: 292 aacctctttgatagactaactaggcttgtcaggtcctatgcaaatgcaattctgagttca 351 |||||| |||||||| | ||||| |||| | |||||||||||||||| | | |||||| Sbjct: 236 aacctccttgatagattttctagggttgtaaagtcctatgcaaatgcagtcttaagttca 295 Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 |||||||||||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||| Sbjct: 296 tttgaagaccctgaaaagatcctagaccaggctgttttggaaatgaatgacgatttgaca 355 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaagaggctcgagaacaagtac 471 |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||| Sbjct: 356 aagatgcggcaagccactgcacaggtcttggcttctcaaaagcggcttgagaacaaatac 415 Query: 472 aaagctgccgaacaagctgatgctgactggtatcggagggctcaacttgctcttcaaaag 531 ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||| ||| Sbjct: 416 aaagccgctgaacaagcttctgatgattggtatcggagggctcaacttgctcttcagaag 475 Query: 532 ggtgaagaggatcttgctcgtgaagcccttaaacggcgcaaatcatatgctgaaaatgca 591 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 476 ggtgatgaggatcttgctcgtgaagcccttaagcggcgtaaatcatatgctgacaatgca 535 Query: 592 agctccttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||||||||| Sbjct: 536 agctccttaaaggcccagcttgatcagca 564
>dbj|AK067698.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116L10, full insert sequence Length = 1309 Score = 537 bits (271), Expect = e-149 Identities = 450/509 (88%), Gaps = 3/509 (0%) Strand = Plus / Plus Query: 115 gaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gcc 171 |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| Sbjct: 59 gaatcgatggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcc 118 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcgtttctctt 231 | ||||||||||||| | || | |||||||||||||||||||||||||||||||| ||| Sbjct: 119 tccgccagcttccgccggaccgcgctcaggacctccttcctcaacggcagcgtttcactt 178 Query: 232 cgagctgtgcaagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagt 291 || | | ||||| |||||||||||||||||||| ||||||||||| | |||| | ||| Sbjct: 179 agacttattcaagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagt 238 Query: 292 aacctctttgatagactaactaggcttgtcaggtcctatgcaaatgcaattctgagttca 351 |||||| |||||||| | ||||| |||| | |||||||||||||||| | | |||||| Sbjct: 239 aacctccttgatagattttctagggttgtaaagtcctatgcaaatgcagtcttaagttca 298 Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 |||||||||||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||| Sbjct: 299 tttgaagaccctgaaaagatcctagaccaggctgttttggaaatgaatgacgatttgaca 358 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaagaggctcgagaacaagtac 471 |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||| Sbjct: 359 aagatgcggcaagccactgcacaggtcttggcttctcaaaagcggcttgagaacaaatac 418 Query: 472 aaagctgccgaacaagctgatgctgactggtatcggagggctcaacttgctcttcaaaag 531 ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||| ||| Sbjct: 419 aaagccgctgaacaagcttctgatgattggtatcggagggctcaacttgctcttcagaag 478 Query: 532 ggtgaagaggatcttgctcgtgaagcccttaaacggcgcaaatcatatgctgaaaatgca 591 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 479 ggtgatgaggatcttgctcgtgaagcccttaagcggcgtaaatcatatgctgacaatgca 538 Query: 592 agctccttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||||||||| Sbjct: 539 agctccttaaaggcccagcttgatcagca 567
>dbj|AK058611.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-A10, full insert sequence Length = 1357 Score = 537 bits (271), Expect = e-149 Identities = 450/509 (88%), Gaps = 3/509 (0%) Strand = Plus / Plus Query: 115 gaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gcc 171 |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| Sbjct: 127 gaatcgatggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcc 186 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcgtttctctt 231 | ||||||||||||| | || | |||||||||||||||||||||||||||||||| ||| Sbjct: 187 tccgccagcttccgccggaccgcgctcaggacctccttcctcaacggcagcgtttcactt 246 Query: 232 cgagctgtgcaagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagt 291 || | | ||||| |||||||||||||||||||| ||||||||||| | |||| | ||| Sbjct: 247 agacttattcaagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagt 306 Query: 292 aacctctttgatagactaactaggcttgtcaggtcctatgcaaatgcaattctgagttca 351 |||||| |||||||| | ||||| |||| | |||||||||||||||| | | |||||| Sbjct: 307 aacctccttgatagattttctagggttgtaaagtcctatgcaaatgcagtcttaagttca 366 Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 |||||||||||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||| Sbjct: 367 tttgaagaccctgaaaagatcctagaccaggctgttttggaaatgaatgacgatttgaca 426 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaagaggctcgagaacaagtac 471 |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| ||| Sbjct: 427 aagatgcggcaagccactgcacaggtcttggcttctcaaaagcggcttgagaacaaatac 486 Query: 472 aaagctgccgaacaagctgatgctgactggtatcggagggctcaacttgctcttcaaaag 531 ||||| || ||||||||| || ||| ||||||||||||||||||||||||||||| ||| Sbjct: 487 aaagccgctgaacaagcttctgatgattggtatcggagggctcaacttgctcttcagaag 546 Query: 532 ggtgaagaggatcttgctcgtgaagcccttaaacggcgcaaatcatatgctgaaaatgca 591 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 547 ggtgatgaggatcttgctcgtgaagcccttaagcggcgtaaatcatatgctgacaatgca 606 Query: 592 agctccttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||||||||| Sbjct: 607 agctccttaaaggcccagcttgatcagca 635
>gb|AY105003.1| Zea mays PCO095419 mRNA sequence Length = 1460 Score = 535 bits (270), Expect = e-149 Identities = 450/510 (88%) Strand = Plus / Plus Query: 112 cccgaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccggcc 171 |||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||||||| ||| Sbjct: 194 cccgaatcaatggagattagggctccgccgacgagcctgaggctcgcgccgccgcccgcc 253 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcgtttctctt 231 | ||||||||||||| || | || |||||||||||||| ||||||||| || ||| Sbjct: 254 gccgccagcttccgccgaaccccgcttaggacctccttccttcgcggcagcgtgtcactt 313 Query: 232 cgagctgtgcaagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagt 291 || |||||||||||| || |||||||||||||||||||||||||| |||||| ||| Sbjct: 314 aaagttgtgcaagtacggcagtcaaatgtcaacagatttaagtgcaatagcatacgaagt 373 Query: 292 aacctctttgatagactaactaggcttgtcaggtcctatgcaaatgcaattctgagttca 351 |||||||||||||| ||||| ||| ||||||||||||| ||||||||| |||| ||||| Sbjct: 374 aacctctttgataggctaacaagggttgtcaggtcctacgcaaatgcagttctaagttcg 433 Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 |||||||||||||||||||| ||||| |||||||| |||||||||||||||| || ||| Sbjct: 434 tttgaagaccctgagaagattctagaccaggcagttctggagatgaatgatgacttgaca 493 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaagaggctcgagaacaagtac 471 ||||||||||| |||||||||||||||||||||||||||||| |||| ||||| || | Sbjct: 494 aagatgcggcaggccactgcacaggtcttggcatctcaaaagcggcttgagaataaatct 553 Query: 472 aaagctgccgaacaagctgatgctgactggtatcggagggctcaacttgctcttcaaaag 531 |||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 554 aaagctgcagaacaagcttctgctgattggtatcggagggctcaacttgctcttcaaaag 613 Query: 532 ggtgaagaggatcttgctcgtgaagcccttaaacggcgcaaatcatatgctgaaaatgca 591 ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct: 614 ggtgacgaggatcttgctcgtgaagcccttaagcggcgtaaatcatatgctgacaatgca 673 Query: 592 agctccttaaaggcccagcttgatcagcag 621 |||||||||| ||||||||||||||||| Sbjct: 674 agctccttaagatcccagcttgatcagcag 703
>ref|NM_190255.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 954 Score = 525 bits (265), Expect = e-146 Identities = 444/503 (88%), Gaps = 3/503 (0%) Strand = Plus / Plus Query: 121 atggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gccacagcc 177 |||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| | ||| Sbjct: 1 atggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcctccgcc 60 Query: 178 agcttccgcccggcctccctcaggacctccttcctcaacggcagcgtttctcttcgagct 237 |||||||||| | || | |||||||||||||||||||||||||||||||| ||| || | Sbjct: 61 agcttccgccggaccgcgctcaggacctccttcctcaacggcagcgtttcacttagactt 120 Query: 238 gtgcaagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagtaacctc 297 | ||||| |||||||||||||||||||| ||||||||||| | |||| | ||||||||| Sbjct: 121 attcaagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagtaacctc 180 Query: 298 tttgatagactaactaggcttgtcaggtcctatgcaaatgcaattctgagttcatttgaa 357 |||||||| | ||||| |||| | |||||||||||||||| | | |||||||||||| Sbjct: 181 cttgatagattttctagggttgtaaagtcctatgcaaatgcagtcttaagttcatttgaa 240 Query: 358 gaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaacaaagatg 417 |||||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||||||||| Sbjct: 241 gaccctgaaaagatcctagaccaggctgttttggaaatgaatgacgatttgacaaagatg 300 Query: 418 cggcaagccactgcacaggtcttggcatctcaaaagaggctcgagaacaagtacaaagct 477 |||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||| Sbjct: 301 cggcaagccactgcacaggtcttggcttctcaaaagcggcttgagaacaaatacaaagcc 360 Query: 478 gccgaacaagctgatgctgactggtatcggagggctcaacttgctcttcaaaagggtgaa 537 || ||||||||| || ||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 361 gctgaacaagcttctgatgattggtatcggagggctcaacttgctcttcagaagggtgat 420 Query: 538 gaggatcttgctcgtgaagcccttaaacggcgcaaatcatatgctgaaaatgcaagctcc 597 |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct: 421 gaggatcttgctcgtgaagcccttaagcggcgtaaatcatatgctgacaatgcaagctcc 480 Query: 598 ttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||| Sbjct: 481 ttaaaggcccagcttgatcagca 503
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 324 gtcctatgcaaatgcaattctgagttcatttgaagaccctgagaagatcctagatcaggc 383 |||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||||| Sbjct: 38907313 gtcctatgcaaatgcagtcttaagttcatttgaagaccctgaaaagatcctagaccaggc 38907254 Query: 384 agtcttggagatgaatgatgatttaacaaagatgcggcaagccactgcacaggt 437 || ||||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 38907253 tgttttggaaatgaatgacgatttgacaaagatgcggcaagccactgcacaggt 38907200 Score = 135 bits (68), Expect = 2e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 500 ggtatcggagggctcaacttgctcttcaaaagggtgaagaggatcttgctcgtgaagccc 559 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 38906784 ggtatcggagggctcaacttgctcttcagaagggtgatgaggatcttgctcgtgaagccc 38906725 Query: 560 ttaaacggcgcaaatcatatgctg 583 |||| ||||| ||||||||||||| Sbjct: 38906724 ttaagcggcgtaaatcatatgctg 38906701 Score = 107 bits (54), Expect = 4e-20 Identities = 98/112 (87%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 115 gaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gcc 171 |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| Sbjct: 38908625 gaatcgatggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcc 38908566 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcg 223 | ||||||||||||| | || | |||||||||||||||||||||||||||| Sbjct: 38908565 tccgccagcttccgccggaccgcgctcaggacctccttcctcaacggcagcg 38908514 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 241 caagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagtaacctcttt 300 ||||| |||||||||||||||||||| ||||||||||| | |||| | ||||||||| || Sbjct: 38907477 caagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagtaacctcctt 38907418 Query: 301 gataga 306 |||||| Sbjct: 38907417 gataga 38907412 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 586 aatgcaagctccttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||||||||||||||| Sbjct: 38906456 aatgcaagctccttaaaggcccagcttgatcagca 38906422
>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1078G07 Length = 199457 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 324 gtcctatgcaaatgcaattctgagttcatttgaagaccctgagaagatcctagatcaggc 383 |||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||||| Sbjct: 180195 gtcctatgcaaatgcagtcttaagttcatttgaagaccctgaaaagatcctagaccaggc 180136 Query: 384 agtcttggagatgaatgatgatttaacaaagatgcggcaagccactgcacaggt 437 || ||||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 180135 tgttttggaaatgaatgacgatttgacaaagatgcggcaagccactgcacaggt 180082 Score = 135 bits (68), Expect = 2e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 500 ggtatcggagggctcaacttgctcttcaaaagggtgaagaggatcttgctcgtgaagccc 559 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 179666 ggtatcggagggctcaacttgctcttcagaagggtgatgaggatcttgctcgtgaagccc 179607 Query: 560 ttaaacggcgcaaatcatatgctg 583 |||| ||||| ||||||||||||| Sbjct: 179606 ttaagcggcgtaaatcatatgctg 179583 Score = 107 bits (54), Expect = 4e-20 Identities = 98/112 (87%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 115 gaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gcc 171 |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| Sbjct: 181507 gaatcgatggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcc 181448 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcg 223 | ||||||||||||| | || | |||||||||||||||||||||||||||| Sbjct: 181447 tccgccagcttccgccggaccgcgctcaggacctccttcctcaacggcagcg 181396 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 241 caagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagtaacctcttt 300 ||||| |||||||||||||||||||| ||||||||||| | |||| | ||||||||| || Sbjct: 180359 caagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagtaacctcctt 180300 Query: 301 gataga 306 |||||| Sbjct: 180299 gataga 180294 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 586 aatgcaagctccttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||||||||||||||| Sbjct: 179338 aatgcaagctccttaaaggcccagcttgatcagca 179304
>dbj|AP003316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0696G06 Length = 142571 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 324 gtcctatgcaaatgcaattctgagttcatttgaagaccctgagaagatcctagatcaggc 383 |||||||||||||||| | | |||||||||||||||||||| ||||||||||| ||||| Sbjct: 72099 gtcctatgcaaatgcagtcttaagttcatttgaagaccctgaaaagatcctagaccaggc 72040 Query: 384 agtcttggagatgaatgatgatttaacaaagatgcggcaagccactgcacaggt 437 || ||||| |||||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 72039 tgttttggaaatgaatgacgatttgacaaagatgcggcaagccactgcacaggt 71986 Score = 135 bits (68), Expect = 2e-28 Identities = 80/84 (95%) Strand = Plus / Minus Query: 500 ggtatcggagggctcaacttgctcttcaaaagggtgaagaggatcttgctcgtgaagccc 559 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct: 71570 ggtatcggagggctcaacttgctcttcagaagggtgatgaggatcttgctcgtgaagccc 71511 Query: 560 ttaaacggcgcaaatcatatgctg 583 |||| ||||| ||||||||||||| Sbjct: 71510 ttaagcggcgtaaatcatatgctg 71487 Score = 107 bits (54), Expect = 4e-20 Identities = 98/112 (87%), Gaps = 3/112 (2%) Strand = Plus / Minus Query: 115 gaatcgatggagataagggccccgcctacgagcctcaggctcgcgacgccgccg---gcc 171 |||||||||||||| ||||| ||||| |||||||| ||||||||| |||||||| ||| Sbjct: 73411 gaatcgatggagattagggcgccgccgacgagcctgaggctcgcgccgccgccgccggcc 73352 Query: 172 acagccagcttccgcccggcctccctcaggacctccttcctcaacggcagcg 223 | ||||||||||||| | || | |||||||||||||||||||||||||||| Sbjct: 73351 tccgccagcttccgccggaccgcgctcaggacctccttcctcaacggcagcg 73300 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Minus Query: 241 caagtacgccaatcaaatgtcaacagatttaagtgcaacgccatacggagtaacctcttt 300 ||||| |||||||||||||||||||| ||||||||||| | |||| | ||||||||| || Sbjct: 72263 caagtgcgccaatcaaatgtcaacaggtttaagtgcaatggcataagaagtaacctcctt 72204 Query: 301 gataga 306 |||||| Sbjct: 72203 gataga 72198 Score = 69.9 bits (35), Expect = 9e-09 Identities = 35/35 (100%) Strand = Plus / Minus Query: 586 aatgcaagctccttaaaggcccagcttgatcagca 620 ||||||||||||||||||||||||||||||||||| Sbjct: 71242 aatgcaagctccttaaaggcccagcttgatcagca 71208
>gb|M73744.1|PEAIM30 Pisum sativum IM30 protein mRNA, complete cds Length = 1449 Score = 93.7 bits (47), Expect = 7e-16 Identities = 182/227 (80%) Strand = Plus / Plus Query: 394 atgaatgatgatttaacaaagatgcggcaagccactgcacaggtcttggcatctcaaaag 453 ||||| |||||||| || || ||||| ||||| || ||||| || ||||||||||||||| Sbjct: 355 atgaacgatgatttgactaaaatgcgtcaagctacagcacaagtattggcatctcaaaag 414 Query: 454 aggctcgagaacaagtacaaagctgccgaacaagctgatgctgactggtatcggagggct 513 | | || || || ||||| ||||| |||||||| || || |||||||| | || Sbjct: 415 cgattggaaaataaatacaaggctgcacaacaagcttctgaagagtggtatcgtaaagca 474 Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacggcgcaaa 573 |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 475 caacttgctcttcagaaaggtgaagaagatcttgctcgtgaagcacttaagcggcgtaaa 534 Query: 574 tcatatgctgaaaatgcaagctccttaaaggcccagcttgatcagca 620 || | ||| || ||||| || || || || || || ||||||||||| Sbjct: 535 tcttttgccgataatgccagttctttgaaagctcaacttgatcagca 581
>gb|AC137825.26| Medicago truncatula clone mth2-23j1, complete sequence Length = 130938 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacggcgcaaa 573 |||||||||||||| || |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 91815 caacttgctcttcagaaaggtgaagaagatcttgctcgtgaagcacttaagcggcgtaaa 91756 Query: 574 tc 575 || Sbjct: 91755 tc 91754
>ref|NM_105199.1| Arabidopsis thaliana unknown protein AT1G65260 mRNA, complete cds Length = 1293 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 ||||||||||| ||||| ||||| || || | ||| | || |||||| |||||| ||| Sbjct: 346 tttgaagacccggagaaaatcctggagcaaactgtcattgaaatgaatagtgatttgaca 405 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaag 453 |||||||| ||||||||||||||||| || ||||| |||||| Sbjct: 406 aagatgcgtcaagccactgcacaggttttagcatcacaaaag 447 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacg 566 |||||||||||| ||| || || ||||||||||| ||||| ||||||||||| Sbjct: 508 caacttgctcttgcaaaaggagatgaggatcttgcacgtgaggcccttaaacg 560
>gb|AY117153.1| Arabidopsis thaliana unknown protein (At1g65260) mRNA, complete cds Length = 1024 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 ||||||||||| ||||| ||||| || || | ||| | || |||||| |||||| ||| Sbjct: 277 tttgaagacccggagaaaatcctggagcaaactgtcattgaaatgaatagtgatttgaca 336 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaag 453 |||||||| ||||||||||||||||| || ||||| |||||| Sbjct: 337 aagatgcgtcaagccactgcacaggttttagcatcacaaaag 378 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacg 566 |||||||||||| ||| || || ||||||||||| ||||| ||||||||||| Sbjct: 439 caacttgctcttgcaaaaggagatgaggatcttgcacgtgaggcccttaaacg 491
>gb|AY045845.1| Arabidopsis thaliana unknown protein (At1g65260) mRNA, complete cds Length = 1202 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 ||||||||||| ||||| ||||| || || | ||| | || |||||| |||||| ||| Sbjct: 286 tttgaagacccggagaaaatcctggagcaaactgtcattgaaatgaatagtgatttgaca 345 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaag 453 |||||||| ||||||||||||||||| || ||||| |||||| Sbjct: 346 aagatgcgtcaagccactgcacaggttttagcatcacaaaag 387 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacg 566 |||||||||||| ||| || || ||||||||||| ||||| ||||||||||| Sbjct: 448 caacttgctcttgcaaaaggagatgaggatcttgcacgtgaggcccttaaacg 500
>emb|BX815857.1|CNS0ABQQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH13ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1226 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 ||||||||||| ||||| ||||| || || | ||| | || |||||| |||||| ||| Sbjct: 309 tttgaagacccggagaaaatcctggagcaaactgtcattgaaatgaatagtgatttgaca 368 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaag 453 |||||||| ||||||||||||||||| || ||||| |||||| Sbjct: 369 aagatgcgtcaagccactgcacaggttttagcatcacaaaag 410 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 538 gaggatcttgctcgtgaagcccttaaacg 566 ||||||||||| ||||| ||||||||||| Sbjct: 496 gaggatcttgcacgtgaggcccttaaacg 524
>gb|AY089093.1| Arabidopsis thaliana clone 32284 mRNA, complete sequence Length = 1292 Score = 67.9 bits (34), Expect = 4e-08 Identities = 85/102 (83%) Strand = Plus / Plus Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 ||||||||||| ||||| ||||| || || | ||| | || |||||| |||||| ||| Sbjct: 346 tttgaagacccggagaaaatcctggagcaaactgtcattgaaatgaatagtgatttgaca 405 Query: 412 aagatgcggcaagccactgcacaggtcttggcatctcaaaag 453 |||||||| ||||||||||||||||| || ||||| |||||| Sbjct: 406 aagatgcgtcaagccactgcacaggttttagcatcacaaaag 447 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacg 566 |||||||||||| ||| || || ||||||||||| ||||| ||||||||||| Sbjct: 508 caacttgctcttgcaaaaggagatgaggatcttgcacgtgaggcccttaaacg 560
>gb|DQ455146.1| Medicago truncatula cDNA-AFLP fragment BC23M34_75 sequence Length = 176 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagc 557 |||||||||||||| || |||||||| ||||||||||||||||| Sbjct: 129 caacttgctcttcagaaaggtgaagaagatcttgctcgtgaagc 172
>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence Length = 88292 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 352 tttgaagaccctgagaagatcctagatcaggcagtcttggagatgaatgatgatttaaca 411 ||||||||||| ||||| ||||| || || | ||| | || |||||| |||||| ||| Sbjct: 3135 tttgaagacccggagaaaatcctggagcaaactgtcattgaaatgaatagtgatttgaca 3194 Query: 412 aagatgcggcaagccactgcacaggt 437 |||||||| ||||||||||||||||| Sbjct: 3195 aagatgcgtcaagccactgcacaggt 3220 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 514 caacttgctcttcaaaagggtgaagaggatcttgctcgtgaagcccttaaacg 566 |||||||||||| ||| || || ||||||||||| ||||| ||||||||||| Sbjct: 3515 caacttgctcttgcaaaaggagatgaggatcttgcacgtgaggcccttaaacg 3567
>gb|AF162283.1|AF162283 Glycine max acetyl-CoA carboxylase (accB-1) gene, complete cds; nuclear gene for chloroplast product Length = 9080 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 500 ggtatcggagggctcaacttgctcttcaaaagggtgaagaggatcttgctcgtgaagccc 559 ||||||| ||||| |||||||||||||| ||||| || ||||| ||||| ||||| || | Sbjct: 509 ggtatcgaagggcgcaacttgctcttcagaagggagacgaggaacttgcccgtgaggcac 450 Query: 560 ttaa 563 |||| Sbjct: 449 ttaa 446 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tttgaagaccctgagaagat 371 |||||||||||||||||||| Sbjct: 972 tttgaagaccctgagaagat 953
>ref|XM_468445.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 147 cctcaggctcgcgacgccgccggcc 171 ||||||||||||| ||||||||||| Sbjct: 381 cctcaggctcgcgccgccgccggcc 357
>gb|AC118232.10| Mus musculus chromosome 9, clone RP23-462C3, complete sequence Length = 192990 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 cgacgccgccggccacagcca 178 ||||||||||||||||||||| Sbjct: 81415 cgacgccgccggccacagcca 81435
>ref|XM_984075.1| PREDICTED: Mus musculus hypothetical protein LOC670941 (LOC670941), mRNA Length = 919 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 cgacgccgccggccacagcca 178 ||||||||||||||||||||| Sbjct: 188 cgacgccgccggccacagcca 208
>ref|XM_985931.1| PREDICTED: Mus musculus hypothetical protein LOC666776 (LOC666776), mRNA Length = 919 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 cgacgccgccggccacagcca 178 ||||||||||||||||||||| Sbjct: 188 cgacgccgccggccacagcca 208
>ref|XM_994200.1| PREDICTED: Mus musculus hypothetical protein LOC676942 (LOC676942), mRNA Length = 919 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 cgacgccgccggccacagcca 178 ||||||||||||||||||||| Sbjct: 188 cgacgccgccggccacagcca 208
>dbj|AK144787.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730034J08 product:hypothetical protein, full insert sequence Length = 1691 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 cgacgccgccggccacagcca 178 ||||||||||||||||||||| Sbjct: 130 cgacgccgccggccacagcca 110
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 cctcaggctcgcgacgccgccggcc 171 ||||||||||||| ||||||||||| Sbjct: 35279958 cctcaggctcgcgccgccgccggcc 35279982
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 ccttcctcaacggcagcgttt 226 ||||||||||||||||||||| Sbjct: 2112641 ccttcctcaacggcagcgttt 2112621
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 cctcaggctcgcgacgccgccggcc 171 ||||||||||||| ||||||||||| Sbjct: 30292 cctcaggctcgcgccgccgccggcc 30316
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 147 cctcaggctcgcgacgccgccggcc 171 ||||||||||||| ||||||||||| Sbjct: 92008 cctcaggctcgcgccgccgccggcc 92032
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 cctccttcctcaacggcagcg 223 ||||||||||||||||||||| Sbjct: 3768886 cctccttcctcaacggcagcg 3768906
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 cgcgccgcccgtctccggcgaccc 36 |||| ||||||||||||||||||| Sbjct: 80255 cgcgacgcccgtctccggcgaccc 80278
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cgcgccgcccgtctccggcgaccc 36 |||| ||||||||||||||||||| Sbjct: 32663652 cgcgacgcccgtctccggcgaccc 32663629
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gacgccgccggccacagcca 178 |||||||||||||||||||| Sbjct: 304300 gacgccgccggccacagcca 304281
>emb|BX640432.1| Bordetella parapertussis strain 12822, complete genome; segment 10/14 Length = 346301 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 gacgccgccggccacagcca 178 |||||||||||||||||||| Sbjct: 29293 gacgccgccggccacagcca 29274
>gb|AC097511.1| Homo sapiens BAC clone RP11-393A12 from 4, complete sequence Length = 195252 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 caatcaaatgtcaacagatt 269 |||||||||||||||||||| Sbjct: 146276 caatcaaatgtcaacagatt 146257
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 cgcgccgcccgtctccggcgaccc 36 |||| ||||||||||||||||||| Sbjct: 32754162 cgcgacgcccgtctccggcgaccc 32754139
>emb|AL772302.20| Mouse DNA sequence from clone RP23-450F9 on chromosome 4, complete sequence Length = 202175 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gggttcctctcctctccatc 95 |||||||||||||||||||| Sbjct: 166878 gggttcctctcctctccatc 166897
>gb|AC109327.10| Homo sapiens chromosome 17, clone RP11-93C20, complete sequence Length = 113000 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 aagtacaaagctgccgaaca 485 |||||||||||||||||||| Sbjct: 110638 aagtacaaagctgccgaaca 110657
>gb|AC120024.22| Homo sapiens chromosome 17, clone CTD-2526A2, complete sequence Length = 136002 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 aagtacaaagctgccgaaca 485 |||||||||||||||||||| Sbjct: 41050 aagtacaaagctgccgaaca 41069
>emb|AL929207.5| Zebrafish DNA sequence from clone CH211-214P16 in linkage group 17, complete sequence Length = 70206 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 534 tgaagaggatcttgctcgtg 553 |||||||||||||||||||| Sbjct: 40600 tgaagaggatcttgctcgtg 40581
>emb|CR855880.13| Zebrafish DNA sequence from clone DKEY-215C14 in linkage group 17, complete sequence Length = 115843 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 tgaagaggatcttgctcgtg 553 |||||||||||||||||||| Sbjct: 79681 tgaagaggatcttgctcgtg 79700
>emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in linkage group 17, complete sequence Length = 156881 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 576 atatgctgaaaatgcaagct 595 |||||||||||||||||||| Sbjct: 36433 atatgctgaaaatgcaagct 36414
>gb|AC154176.5| Mus musculus BAC clone RP23-463F22 from chromosome 13, complete sequence Length = 193103 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 aatgatgatttaacaaagat 416 |||||||||||||||||||| Sbjct: 36813 aatgatgatttaacaaagat 36794
>emb|AL929437.11| Mouse DNA sequence from clone RP23-74P16 on chromosome 2, complete sequence Length = 123971 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ctccctcaggacctccttcc 211 |||||||||||||||||||| Sbjct: 21308 ctccctcaggacctccttcc 21327
>ref|NM_001004528.1| Danio rerio RAB3 GTPase activating protein subunit 2 (non-catalytic) (rab3gap2), mRNA Length = 4672 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 534 tgaagaggatcttgctcgtg 553 |||||||||||||||||||| Sbjct: 2069 tgaagaggatcttgctcgtg 2088 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,277,952 Number of Sequences: 3902068 Number of extensions: 5277952 Number of successful extensions: 107458 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107155 Number of HSP's gapped (non-prelim): 290 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
