ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26f01 |
|---|---|
| Clone Library Name | barley_pub |
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 32.3 bits (72), Expect = 0.30 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = +3 Query: 102 QSPNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPFQNMGQ 281 Q+ + G+ S +G Q GY Y G+ Q +Y Y NQG QNM Sbjct: 40 QTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPY-----NNQGQQQNMES 94 Query: 282 PVNQG 296 +QG Sbjct: 95 SGSQG 99
>CBP1_CAEEL (P34545) Protein cbp-1| Length = 2056 Score = 31.2 bits (69), Expect = 0.67 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Frame = +3 Query: 108 PNMPNGRPMP-QSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPFQNMGQP 284 PN NG +P + A Q YMP NG G G Q Q P + G P Sbjct: 1735 PNAQNGPGLPGMNPQMNANQSRYMP--NGPGLGQSGAPG---------QQQQPMYSSGMP 1783 Query: 285 VNQGNSIRGVNPELSP 332 + + + G+NP+ P Sbjct: 1784 MQRPGGLGGMNPQQQP 1799
>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated| factor 180) (BAF180) Length = 1689 Score = 30.8 bits (68), Expect = 0.87 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Frame = +3 Query: 117 PNGRPMPQSSVFGALQMGYM-PQYNGFS---YQPPGTYGLMQYPLSXMQNQGPFQNMGQP 284 P G P Q V G + MG M P + G + PPG GL P + NQG +G P Sbjct: 1491 PPGLPPLQGPVDGLVSMGSMQPLHPGGPPPHHLPPGVPGLPGIPPPGVMNQGVAPMVGTP 1550 Query: 285 VNQGN 299 G+ Sbjct: 1551 APGGS 1555
>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)| Length = 1090 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Frame = +3 Query: 120 NGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTY-----GLMQYPLSXMQNQGPFQNMGQP 284 +G P V L + G+ QPPG+Y P S N G Q GQ Sbjct: 26 SGSPYTNGPVHNTLMSPQVSSSQGYDSQPPGSYPRPMPAKTLNPFSAQSNYGGSQGSGQT 85 Query: 285 VN 290 +N Sbjct: 86 LN 87
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/53 (33%), Positives = 24/53 (45%) Frame = +3 Query: 135 PQSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPFQNMGQPVNQ 293 P G Q G Q G+ +PPG Q P + Q+QG +Q+ G P Q Sbjct: 344 PSGQQQGGHQQGRQGQEGGYQQRPPG-----QQP-NQTQSQGQYQSRGPPQQQ 390
>PAN1_YEAST (P32521) Protein PAN1| Length = 1480 Score = 29.6 bits (65), Expect = 1.9 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Frame = +3 Query: 102 QSPNMPNGRPMPQSSVF----GALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPFQ 269 QS N P G+P PQ + A +G MPQ G S+ + Q P + N G Sbjct: 34 QSSNQPQGQPQPQQQMAFNQPQATGIGGMPQSFGNSFS-----SMPQQPQTGYNNNG--- 85 Query: 270 NMGQPVNQGN 299 N G GN Sbjct: 86 NNGSVYGNGN 95
>GCN5_ASHGO (Q756G9) Histone acetyltransferase GCN5 (EC 2.3.1.48)| Length = 452 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +3 Query: 102 QSPNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGT--YGLMQYPLSXMQNQGPFQNM 275 Q ++ N P+ SV G + G+ P+ + + +P Y MQ L+ +QN Sbjct: 306 QFEDLDNIEPIDPMSVPGLREAGWTPEMDELAQRPKRGPHYATMQNVLTELQNHAAAWPF 365 Query: 276 GQPVNQ 293 QPVN+ Sbjct: 366 LQPVNR 371
>AMO1_SCHPO (O74315) Nucleoporin-like protein amo1 (Aberrent microtubule| protein 1) Length = 475 Score = 29.3 bits (64), Expect = 2.5 Identities = 20/55 (36%), Positives = 24/55 (43%) Frame = +3 Query: 102 QSPNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPF 266 Q+ N P VFG + NGF+ QPP T+ MQ P QGPF Sbjct: 326 QNLNTQFSLPNNSQPVFGHTSLTQPVNPNGFTVQPPATF--MQQP------QGPF 372
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +3 Query: 162 QMGYMPQYNGFSYQPPGTYG 221 Q GY P Y G+ Y P G YG Sbjct: 282 QQGYGPGYGGYDYSPYGYYG 301
>DHH1_YARLI (Q6C0X2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 522 Score = 28.9 bits (63), Expect = 3.3 Identities = 22/59 (37%), Positives = 22/59 (37%) Frame = +3 Query: 108 PNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPFQNMGQP 284 P G P PQ G G PQ G Y PP YG Q QG N GQP Sbjct: 462 PGPGYGYPPPQGFPQGMPPQGMPPQGAG-GYMPPTPYGYQQQGFPPQPPQG--FNNGQP 517
>SMAP1_HUMAN (Q8IYB5) Stromal membrane-associated protein 1| Length = 467 Score = 28.5 bits (62), Expect = 4.3 Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Frame = +3 Query: 102 QSPNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXM---QNQGPFQN 272 QSP+M G PMP + G Q G MP G G M P S Q Q P + Sbjct: 362 QSPSMMVGMPMP-NGFMGNAQTGVMPLPQNVVGPQGGMVGQMGAPQSKFGLPQAQQPQWS 420 Query: 273 MGQPVNQ--GNSIRGVNP 320 + Q Q G SI P Sbjct: 421 LSQMNQQMAGMSISSATP 438
>O52K2_HUMAN (Q8NGK3) Olfactory receptor 52K2| Length = 314 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +1 Query: 97 NCNLL-ICQMDAQCHSPQYLELYRWDICLSIMDLVIS 204 NC LL I Q DA H P YL L L+ +DLV+S Sbjct: 44 NCTLLLIIQADAALHEPMYLFL----AMLAAIDLVLS 76
>MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)| Length = 1020 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 7/63 (11%) Frame = +3 Query: 135 PQSSVFGALQMGYMPQYNGFSYQP-------PGTYGLMQYPLSXMQNQGPFQNMGQPVNQ 293 PQ + G G P+ F P PG + YP+ M + PF GQP + Sbjct: 928 PQQGLPGLSPSG--PELGAFGQSPTSQMSGRPGLHCAQAYPVRTMGQELPFAYSGQPGSS 985 Query: 294 GNS 302 G S Sbjct: 986 GLS 988
>34KD_MYCTU (P65637) 34 kDa antigenic protein homolog| Length = 303 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +3 Query: 129 PMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLM-QYPLSXMQNQGPFQNMGQPVNQGNSI 305 P P+ +G Q G QY + QP G YG + +Q+ GP Q QP G+ Sbjct: 164 PRPKFDPYG--QYGRYGQYGQYGVQPGGYYGQQGAQQAAGLQSPGP-QQSPQPPGYGSQY 220 Query: 306 RG 311 G Sbjct: 221 GG 222
>34KD_MYCBO (P65638) 34 kDa antigenic protein homolog| Length = 303 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +3 Query: 129 PMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLM-QYPLSXMQNQGPFQNMGQPVNQGNSI 305 P P+ +G Q G QY + QP G YG + +Q+ GP Q QP G+ Sbjct: 164 PRPKFDPYG--QYGRYGQYGQYGVQPGGYYGQQGAQQAAGLQSPGP-QQSPQPPGYGSQY 220 Query: 306 RG 311 G Sbjct: 221 GG 222
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%) Frame = +3 Query: 108 PNMPNGRPMPQSSVFG-------ALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGP 263 P+ + +P PQ S+ G +LQ G + Q+ G PP +GL P Q QGP Sbjct: 825 PSQSSAQPHPQPSLHGQGPPGPHSLQTGPLLQHPG----PPQPFGLPSQP---SQGQGP 876
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/34 (41%), Positives = 14/34 (41%) Frame = +3 Query: 108 PNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPP 209 P PNG P P S F PQ F Y PP Sbjct: 363 PQQPNGMPYPPYSPF--------PQPTNFQYPPP 388
>SSBP3_CHICK (Q98948) Single-stranded DNA-binding protein 3 (Sequence-specific| single-stranded-DNA-binding protein) Length = 368 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/71 (29%), Positives = 29/71 (40%) Frame = +3 Query: 108 PNMPNGRPMPQSSVFGALQMGYMPQYNGFSYQPPGTYGLMQYPLSXMQNQGPFQNMGQPV 287 P+ PN P S GA+ PGT L+ + + QG NMG P+ Sbjct: 137 PHNPNSMMGPHSQPPGAV---------------PGTQPLLPNSMDPTRQQG-HPNMGGPM 180 Query: 288 NQGNSIRGVNP 320 + N RG+ P Sbjct: 181 QRMNPPRGMGP 191
>ARI1A_HUMAN (O14497) AT-rich interactive domain-containing protein 1A (ARID| domain-containing protein 1A) (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like pr Length = 2285 Score = 27.3 bits (59), Expect = 9.7 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Frame = +3 Query: 102 QSPNMPNGRPMPQSSVFGALQMGYMPQYN--GFSYQPPGTYGLMQYPLSXMQNQGPFQ 269 Q +P +P P S A YN G +Y T + P QNQ PFQ Sbjct: 1401 QQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQ 1458 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,643,217 Number of Sequences: 219361 Number of extensions: 942437 Number of successful extensions: 1814 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1814 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
