>ATG7_NEUCR (Q871U2) Autophagy-related protein 7 (Autophagy-related|
           E1-like-activating enzyme atg-7)
          Length = 699

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 61  CVAIIGNWRKNAKGDLLEKDTNFPEICSPTVLRD 162
           C+  +  W +N  GDL  +  N  E   PT L D
Sbjct: 305 CMPKVTGWERNGNGDLRPRVANLAEYMDPTRLAD 338

>TLR4_PONPY (Q8SPE9) Toll-like receptor 4 precursor (CD284 antigen)|
          Length = 828

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -2

Query: 384 CSNTSNMVRVGLNHVINPRNLVIRYFPPSKTYLEIPSEHRFGQICSPES 238
           C N+  ++   LNH++  +   +++FP S  +L + +++ F   C  +S
Sbjct: 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQNDFACTCEHQS 587

>SYK_WOLSU (Q7MAR1) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 507

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 369 NMVRVGLNHVINPRNLVIRYFPPSKTYLEIPS--EHRFGQICSPESIP*TYPH 217
           N    G++H  NP   +I ++   KTY E+ S  E  FG +     +P   PH
Sbjct: 253 NFRNEGMDHSHNPEFTMIEFYWAYKTYHELMSLTEELFGYLFERLGLPKILPH 305

>TLR4_GORGO (Q8SPE8) Toll-like receptor 4 precursor (CD284 antigen)|
          Length = 837

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -2

Query: 384 CSNTSNMVRVGLNHVINPRNLVIRYFPPSKTYLEIPSEHRFGQICSPES 238
           C N+  ++   LNH++  +   +++FP S  +L + +++ F   C  +S
Sbjct: 540 CLNSLRVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQNDFACTCEHQS 587

>TLR4_PANPA (Q9TTN0) Toll-like receptor 4 precursor (CD284 antigen)|
          Length = 839

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -2

Query: 384 CSNTSNMVRVGLNHVINPRNLVIRYFPPSKTYLEIPSEHRFGQICSPES 238
           C N+  ++   LNH++  +   +++FP S  +L + +++ F   C  +S
Sbjct: 542 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQNDFACTCEHQS 589

>TLR4_HUMAN (O00206) Toll-like receptor 4 precursor (hToll) (CD284 antigen)|
          Length = 839

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -2

Query: 384 CSNTSNMVRVGLNHVINPRNLVIRYFPPSKTYLEIPSEHRFGQICSPES 238
           C N+  ++   LNH++  +   +++FP S  +L + +++ F   C  +S
Sbjct: 542 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL-TQNDFACTCEHQS 589


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,704,939
Number of Sequences: 219361
Number of extensions: 1299028
Number of successful extensions: 2837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2837
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)