ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25p14 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 289 bits (146), Expect = 3e-75 Identities = 152/154 (98%) Strand = Plus / Plus Query: 200 tatggaatagagtaccggtattttaccggaatccatacataaattgtattccctttttat 259 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 5031 tatggaatagagtaccggtattttaccggaatccatacataaatcgtattccctttttat 5090 Query: 260 ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5091 ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 5150 Query: 320 gaaagttgctcatataatacatacataattgtat 353 |||||||| ||||||||||||||||||||||||| Sbjct: 5151 gaaagttggtcatataatacatacataattgtat 5184 Score = 220 bits (111), Expect = 2e-54 Identities = 150/165 (90%), Gaps = 4/165 (2%) Strand = Plus / Plus Query: 1 ggcacccttacttcacttttttattttgcatctctcattaaagagggagggaaggagtat 60 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 4867 ggcacccttacttcacttttttattttgcatctctcattaaagaggcagggaaggcgtat 4926 Query: 61 aggaannnnnnncactactcccgatcgataaagataaagaaagacacacatacgatatgt 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4927 aggaatttttttcactactcccgatcgataaagataaagaaagacacacatacgatatgt 4986 Query: 121 ggattagtagaattt----taggatattactctatctttctttat 161 ||||||||||||||| || |||||||||||||||||||||| Sbjct: 4987 ggattagtagaatttaggatattatattactctatctttctttat 5031
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 289 bits (146), Expect = 3e-75 Identities = 152/154 (98%) Strand = Plus / Plus Query: 200 tatggaatagagtaccggtattttaccggaatccatacataaattgtattccctttttat 259 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 16385 tatggaatagagtaccggtattttaccggaatccatacataaatcgtattccctttttat 16444 Query: 260 ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16445 ttcagacctcttttccccatctcacttctactgcttatttggatgtctatgtgacccata 16504 Query: 320 gaaagttgctcatataatacatacataattgtat 353 |||||||| ||||||||||||||||||||||||| Sbjct: 16505 gaaagttggtcatataatacatacataattgtat 16538 Score = 220 bits (111), Expect = 2e-54 Identities = 150/165 (90%), Gaps = 4/165 (2%) Strand = Plus / Plus Query: 1 ggcacccttacttcacttttttattttgcatctctcattaaagagggagggaaggagtat 60 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct: 16221 ggcacccttacttcacttttttattttgcatctctcattaaagaggcagggaaggcgtat 16280 Query: 61 aggaannnnnnncactactcccgatcgataaagataaagaaagacacacatacgatatgt 120 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16281 aggaatttttttcactactcccgatcgataaagataaagaaagacacacatacgatatgt 16340 Query: 121 ggattagtagaattt----taggatattactctatctttctttat 161 ||||||||||||||| || |||||||||||||||||||||| Sbjct: 16341 ggattagtagaatttaggatattatattactctatctttctttat 16385
>gb|M16840.1|WHTCPCA2 Wheat Asp-tRNA gene Length = 559 Score = 196 bits (99), Expect = 3e-47 Identities = 150/166 (90%), Gaps = 6/166 (3%) Strand = Plus / Plus Query: 1 ggcaccctt-acttcacttttttattttgcatctctcattaaagagggagggaaggagta 59 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 386 ggcacccttgacttcacttttttattttgcatctctcattaaagaggcagggaaggcgta 445 Query: 60 taggaannnnnnncactactcccgatcgataaagataaagaaagacacacatacgatatg 119 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 taggaatttttt-cactactcccgatcgataaagataaagaaagacacacatacgatatg 504 Query: 120 tggattagtagaattt----taggatattactctatctttctttat 161 |||||||||||||||| || |||||||||||||||||||||| Sbjct: 505 tggattagtagaatttaggatattatattactctatctttctttat 550
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 283 acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 342 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 17763 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 17822 Query: 343 cataattgtat 353 ||||||||||| Sbjct: 17823 cataattgtat 17833 Score = 123 bits (62), Expect = 4e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 157 tttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagtaccg 216 ||||||||||||||| ||||||||||| ||||||||| ||| ||||| ||| |||||||| Sbjct: 17378 tttatgatgataccaccctcatcttaacttcctattcgactcttatgaaatcgagtaccg 17437 Query: 217 gtattttaccggaatccatacataaa 242 |||||||||||||||||||||||||| Sbjct: 17438 gtattttaccggaatccatacataaa 17463 Score = 46.1 bits (23), Expect = 0.076 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 1 ggcacccttacttcactttt-ttattttgcatctctcattaaa 42 |||||||||||||||||||| || |||||||| ||||| |||| Sbjct: 17231 ggcacccttacttcacttttatttttttgcatttctcagtaaa 17273
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 283 acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 342 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 79888 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 79947 Query: 343 cataattgtat 353 ||||||||||| Sbjct: 79948 cataattgtat 79958 Score = 121 bits (61), Expect = 2e-24 Identities = 129/150 (86%), Gaps = 5/150 (3%) Strand = Plus / Plus Query: 93 gataaagaaagacacacatacgatatgtggattagtagaattttaggatattactctatc 152 ||||| ||||| || ||||| ||| ||||||||||| ||||| |||||| |||||||| Sbjct: 79435 gataaggaaaggcatacatatcatacgtggattagtataattt-aggatactactctatt 79493 Query: 153 tttctttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagt 212 ||| ||||| |||||| ||||||||||| ||||||||| ||| ||||| ||| |||| Sbjct: 79494 ttt----atgattataccaccctcatcttaacttcctattcgactcttatgaaatcgagt 79549 Query: 213 accggtattttaccggaatccatacataaa 242 |||||||||||||||||||||||||||||| Sbjct: 79550 accggtattttaccggaatccatacataaa 79579 Score = 46.1 bits (23), Expect = 0.076 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 1 ggcacccttacttcactttt-ttattttgcatctctcattaaa 42 |||||||||||||||||||| || |||||||| ||||| |||| Sbjct: 79348 ggcacccttacttcacttttctttttttgcatttctcagtaaa 79390
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 283 acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 342 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 17755 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 17814 Query: 343 cataattgtat 353 ||||||||||| Sbjct: 17815 cataattgtat 17825 Score = 123 bits (62), Expect = 4e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 157 tttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagtaccg 216 ||||||||||||||| ||||||||||| ||||||||| ||| ||||| ||| |||||||| Sbjct: 17370 tttatgatgataccaccctcatcttaacttcctattcgactcttatgaaatcgagtaccg 17429 Query: 217 gtattttaccggaatccatacataaa 242 |||||||||||||||||||||||||| Sbjct: 17430 gtattttaccggaatccatacataaa 17455 Score = 46.1 bits (23), Expect = 0.076 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 1 ggcacccttacttcactttt-ttattttgcatctctcattaaa 42 |||||||||||||||||||| || |||||||| ||||| |||| Sbjct: 17223 ggcacccttacttcacttttatttttttgcatttctcagtaaa 17265
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 125 bits (63), Expect = 1e-25 Identities = 69/71 (97%) Strand = Plus / Plus Query: 283 acttctactgcttatttggatgtctatgtgacccatagaaagttgctcatataatacata 342 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18261 acttctactgcttattgggatgtctatgtgacccatagaaagttggtcatataatacata 18320 Query: 343 cataattgtat 353 ||||||||||| Sbjct: 18321 cataattgtat 18331 Score = 121 bits (61), Expect = 2e-24 Identities = 129/150 (86%), Gaps = 5/150 (3%) Strand = Plus / Plus Query: 93 gataaagaaagacacacatacgatatgtggattagtagaattttaggatattactctatc 152 ||||| ||||| || ||||| ||| ||||||||||| ||||| |||||| |||||||| Sbjct: 17808 gataaggaaaggcatacatatcatacgtggattagtataattt-aggatactactctatt 17866 Query: 153 tttctttatgatgataccatcctcatcttaatttcctattccactgttatggaatagagt 212 ||| ||||| |||||| ||||||||||| ||||||||| ||| ||||| ||| |||| Sbjct: 17867 ttt----atgattataccaccctcatcttaacttcctattcgactcttatgaaatcgagt 17922 Query: 213 accggtattttaccggaatccatacataaa 242 |||||||||||||||||||||||||||||| Sbjct: 17923 accggtattttaccggaatccatacataaa 17952 Score = 46.1 bits (23), Expect = 0.076 Identities = 39/43 (90%), Gaps = 1/43 (2%) Strand = Plus / Plus Query: 1 ggcacccttacttcactttt-ttattttgcatctctcattaaa 42 |||||||||||||||||||| || |||||||| ||||| |||| Sbjct: 17721 ggcacccttacttcacttttctttttttgcatttctcagtaaa 17763
>emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, complete sequence Length = 174414 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 98 agaaagacacacatacgatatgtggatt 125 |||||||||||||||||| ||||||||| Sbjct: 174304 agaaagacacacatacgacatgtggatt 174331
>gb|AC007132.3| Homo sapiens BAC clone RP11-444A22 from 2, complete sequence Length = 157779 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 332 tataatacatacataattgtat 353 |||||||||||||||||||||| Sbjct: 128115 tataatacatacataattgtat 128094
>ref|XM_629597.1| Dictyostelium discoideum inositol 5-phosphatase (DDB0185180), partial mRNA Length = 4140 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 atcgataaagataaagaaaga 104 ||||||||||||||||||||| Sbjct: 2680 atcgataaagataaagaaaga 2700
>emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 on chromosome 6q16.3-21 Contains a novel gene and a chromatin assembly factor 1 p60 subunit (CHAF1B) pseudogene, complete sequence Length = 136299 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 ttcacttttttattttgcatc 32 ||||||||||||||||||||| Sbjct: 26939 ttcacttttttattttgcatc 26919
>emb|BX293556.14| Zebrafish DNA sequence from clone DKEY-21N20 in linkage group 11, complete sequence Length = 212880 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 240 aaattgtattccctttttatt 260 ||||||||||||||||||||| Sbjct: 104251 aaattgtattccctttttatt 104271
>gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170215 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 17 ttttttattttgcatctctcattaaagag 45 |||||||||||| |||||||||| ||||| Sbjct: 47265 ttttttattttgaatctctcattcaagag 47293
>gb|AC019212.4|AC019212 Homo sapiens BAC clone RP11-462H12 from X, complete sequence Length = 213793 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 ttcacttttttattttgcatctctc 36 |||||||||||||||||| |||||| Sbjct: 170922 ttcacttttttattttgcttctctc 170898
>gb|AC005539.1| Homo sapiens BAC clone RP11-335J18 from 2, complete sequence Length = 209613 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 84 atcgataaagataaagaaagacaca 108 ||||||||||||| ||||||||||| Sbjct: 41570 atcgataaagatatagaaagacaca 41546
>gb|AY184994.1| Dictyostelium discoideum inositol 5-phosphatase 3 gene, complete cds Length = 4325 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 atcgataaagataaagaaaga 104 ||||||||||||||||||||| Sbjct: 2865 atcgataaagataaagaaaga 2885
>gb|AC002449.1|AC002449 Human PAC clone RP3-404K21 from Xq23, complete sequence Length = 173767 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 285 ttctactgcttatttggatgt 305 ||||||||||||||||||||| Sbjct: 14819 ttctactgcttatttggatgt 14839
>gb|AC154516.2| Mus musculus BAC clone RP24-83D23 from chromosome 14, complete sequence Length = 216566 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aagataaagaaagacacaca 110 |||||||||||||||||||| Sbjct: 167714 aagataaagaaagacacaca 167733
>gb|AC159806.2| Echinops telfairi, clone Echinops telfairi -24240357J7, complete sequence Length = 38387 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aatccatacataaattgtat 248 |||||||||||||||||||| Sbjct: 25287 aatccatacataaattgtat 25268
>ref|NM_007455.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit (Ap1g2), mRNA Length = 2599 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1801 ttaaagagggagggaaggag 1820
>gb|AC160458.4| Mus musculus chromosome 5, clone RP23-14C20, complete sequence Length = 253338 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 atataatacatacataattg 350 |||||||||||||||||||| Sbjct: 185504 atataatacatacataattg 185523
>gb|BC058402.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit, mRNA (cDNA clone IMAGE:6817446), partial cds Length = 2720 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1846 ttaaagagggagggaaggag 1865
>emb|AL139341.9| Human DNA sequence from clone RP11-99N20 on chromosome 10 Contains the 5' end of a novel gene, the gene for glutathione transferase omega 1 (GSTO1), the 5' end of a variant of the gene for a novel glutathione-S-transferase and two CpG islands, complete sequence Length = 104378 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 acttctactgcttatttgga 302 |||||||||||||||||||| Sbjct: 34634 acttctactgcttatttgga 34653
>gb|AC101004.6| Mus musculus, clone RP23-79E5, complete sequence Length = 220468 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 atataatacatacataattg 350 |||||||||||||||||||| Sbjct: 42681 atataatacatacataattg 42700
>gb|AC175487.3| Mus musculus chromosome 7, clone wi1-1426N22, complete sequence Length = 41781 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 atataatacatacataattg 350 |||||||||||||||||||| Sbjct: 5587 atataatacatacataattg 5568
>emb|AL161505.2|ATCHRIV17 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 17 Length = 198176 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 attgtattccctttttattt 261 |||||||||||||||||||| Sbjct: 139560 attgtattccctttttattt 139541
>gb|AC126178.6| Homo sapiens 12 BAC RP11-567C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127439 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 aaagagggagggaaggagta 59 |||||||||||||||||||| Sbjct: 55988 aaagagggagggaaggagta 55969
>gb|AC107464.5| Homo sapiens BAC clone RP11-1191J2 from 4, complete sequence Length = 219357 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 tcttttccccatctcacttc 287 |||||||||||||||||||| Sbjct: 14754 tcttttccccatctcacttc 14735
>gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complete sequence Length = 193650 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cttcacttttttattttgca 30 |||||||||||||||||||| Sbjct: 21080 cttcacttttttattttgca 21099
>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence Length = 168708 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 ataatacatacataattgta 352 |||||||||||||||||||| Sbjct: 66650 ataatacatacataattgta 66669
>dbj|AK147177.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920194L06 product:adaptor protein complex AP-1, gamma 2 subunit, full insert sequence Length = 2640 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1840 ttaaagagggagggaaggag 1859
>dbj|AK151844.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830040H14 product:adaptor protein complex AP-1, gamma 2 subunit, full insert sequence Length = 2505 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1832 ttaaagagggagggaaggag 1851
>gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, complete sequence Length = 114005 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ataatacatacataattgta 352 |||||||||||||||||||| Sbjct: 56555 ataatacatacataattgta 56536
>dbj|AK052384.1| Mus musculus 13 days embryo heart cDNA, RIKEN full-length enriched library, clone:D330046K02 product:adaptor protein complex AP-1, gamma 2 subunit, full insert sequence Length = 3029 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1955 ttaaagagggagggaaggag 1974
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 acttctactgcttatttgga 302 |||||||||||||||||||| Sbjct: 17016515 acttctactgcttatttgga 17016496
>gb|AC157212.2| Mus musculus BAC clone RP23-171A13 from chromosome 14, complete sequence Length = 217099 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 149192 ttaaagagggagggaaggag 149173
>gb|AC069145.5|AC069145 Oryza sativa chromosome 10 BAC OSJNBb0094K03 genomic sequence, complete sequence Length = 135216 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 acttctactgcttatttgga 302 |||||||||||||||||||| Sbjct: 57007 acttctactgcttatttgga 56988
>gb|AC073947.46| Mus musculus strain C57BL/6J chromosome 9 clone rp23-80d20, complete sequence Length = 247089 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tccatacataaattgtattc 250 |||||||||||||||||||| Sbjct: 206479 tccatacataaattgtattc 206498
>emb|BX548032.5| Zebrafish DNA sequence from clone CH211-145G9 in linkage group 17, complete sequence Length = 161483 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 ttactctatctttctttatgatga 166 |||||||| ||||||||||||||| Sbjct: 129573 ttactctaactttctttatgatga 129596
>emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chromosome 4, complete sequence Length = 205765 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 aagttgctcatataatacatacat 345 |||||||||||||| ||||||||| Sbjct: 9243 aagttgctcatatactacatacat 9266
>gb|BC080798.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit, mRNA (cDNA clone IMAGE:4953412), containing frame-shift errors Length = 2599 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1748 ttaaagagggagggaaggag 1767
>emb|AL442638.3|HS570H19 Homo sapiens chromosome 9 BAC RP11-570H19, complete sequence Length = 188247 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atatgtggattagtagaatt 134 |||||||||||||||||||| Sbjct: 115304 atatgtggattagtagaatt 115323
>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19, complete sequence Length = 191582 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ataaagaaagacacacatac 113 |||||||||||||||||||| Sbjct: 32483 ataaagaaagacacacatac 32502
>gb|AF078820.2|AF078820 Nannospalax ehrenbergi high mobility group protein (HMG1) gene, complete cds Length = 2193 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cctcatcttaatttcctatt 192 |||||||||||||||||||| Sbjct: 1154 cctcatcttaatttcctatt 1173
>gb|AF147262.1|F28D6 Arabidopsis thaliana BAC F28D6 Length = 112629 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 attgtattccctttttattt 261 |||||||||||||||||||| Sbjct: 76468 attgtattccctttttattt 76449
>emb|AJ511874.1|MMU511874 Mus musculus partial Muc2 gene for secreted gel-forming mucin, exons 39-47 Length = 4200 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 atataatacatacataattg 350 |||||||||||||||||||| Sbjct: 113 atataatacatacataattg 94
>gb|BC108374.1| Mus musculus adaptor protein complex AP-1, gamma 2 subunit, mRNA (cDNA clone MGC:118107 IMAGE:4936738), complete cds Length = 2670 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1827 ttaaagagggagggaaggag 1846
>gb|AF068707.1|AF068707 Mus musculus gamma2-adaptin (G2ad) mRNA, complete cds Length = 2599 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 ttaaagagggagggaaggag 57 |||||||||||||||||||| Sbjct: 1801 ttaaagagggagggaaggag 1820
>emb|CT572983.7| Mouse DNA sequence from clone RP23-110N1 on chromosome 14, complete sequence Length = 218673 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 aagataaagaaagacacaca 110 |||||||||||||||||||| Sbjct: 211543 aagataaagaaagacacaca 211524
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 acttctactgcttatttgga 302 |||||||||||||||||||| Sbjct: 17025555 acttctactgcttatttgga 17025536
>emb|CT025680.8| Mouse DNA sequence from clone RP24-84H10 on chromosome 9, complete sequence Length = 243795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 tccatacataaattgtattc 250 |||||||||||||||||||| Sbjct: 144981 tccatacataaattgtattc 145000
>gb|AC006631.1| Caenorhabditis elegans cosmid F27B3, complete sequence Length = 30767 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ataaattgtattcccttttt 257 |||||||||||||||||||| Sbjct: 6087 ataaattgtattcccttttt 6106 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,385,817 Number of Sequences: 3902068 Number of extensions: 5385817 Number of successful extensions: 133986 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133794 Number of HSP's gapped (non-prelim): 185 length of query: 353 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 331 effective length of database: 17,147,199,772 effective search space: 5675723124532 effective search space used: 5675723124532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
