ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26e16 |
|---|---|
| Clone Library Name | barley_pub |
>UC05_MAIZE (P80611) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 154) (Fragments) Length = 28 Score = 40.0 bits (92), Expect = 0.010 Identities = 20/37 (54%), Positives = 22/37 (59%) Frame = +2 Query: 494 DHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGG 604 DH GV DGT +VL KILPWG+EAYA G Sbjct: 1 DHPGVRDGTNIVLX----------KILPWGDEAYAAG 27
>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 34.3 bits (77), Expect = 0.56 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 161 GYCLSVRDGNVVLAPSNPRDEHQHW 235 G CL+ +D V+A NP D HQHW Sbjct: 595 GTCLTSKDKKPVMATCNPSDPHQHW 619
>YAET_SALTY (Q8ZRP0) Outer membrane protein assembly factor yaeT precursor| Length = 804 Score = 32.0 bits (71), Expect = 2.8 Identities = 28/84 (33%), Positives = 34/84 (40%) Frame = +2 Query: 488 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 667 D DH V G T W GD K +P+ E YAGGS+ TVR F Sbjct: 618 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS----------TVRGFQSNT 663 Query: 668 EGFSATVRNGTVVLAPSNPRDEYQ 739 G A +NG N D+Y+ Sbjct: 664 IGPKAVYKNGAHTSWDDN--DDYE 685
>YAET_SALPA (Q5PD65) Outer membrane protein assembly factor yaeT precursor| Length = 803 Score = 32.0 bits (71), Expect = 2.8 Identities = 28/84 (33%), Positives = 34/84 (40%) Frame = +2 Query: 488 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 667 D DH V G T W GD K +P+ E YAGGS+ TVR F Sbjct: 617 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS----------TVRGFQSNT 662 Query: 668 EGFSATVRNGTVVLAPSNPRDEYQ 739 G A +NG N D+Y+ Sbjct: 663 IGPKAVYKNGAHTSWDDN--DDYE 684
>YAET_SALTI (Q8Z9A3) Outer membrane protein assembly factor yaeT precursor| Length = 803 Score = 31.6 bits (70), Expect = 3.6 Identities = 25/70 (35%), Positives = 29/70 (41%) Frame = +2 Query: 488 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 667 D DH V G T W GD K +P+ E YAGGS+ TVR F Sbjct: 617 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSS----------TVRGFQSNT 662 Query: 668 EGFSATVRNG 697 G A +NG Sbjct: 663 IGPKAVYKNG 672
>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 31.2 bits (69), Expect = 4.7 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 161 GYCLSVRDGNVVLAPSNPRDEHQHW 235 G CL+ +D +AP NPRD +Q W Sbjct: 595 GTCLTSQDKKPAMAPCNPRDPYQLW 619
>GALT6_HUMAN (Q8NCL4) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 31.2 bits (69), Expect = 4.7 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +2 Query: 161 GYCLSVRDGNVVLAPSNPRDEHQHW 235 G CL+ +D +AP NP D HQ W Sbjct: 595 GTCLTSQDKKPAMAPCNPSDPHQLW 619
>CAZA1_CHICK (P13127) F-actin capping protein alpha-1 subunit (CapZ 36/32)| (Beta-actinin subunit I) Length = 286 Score = 31.2 bits (69), Expect = 4.7 Identities = 22/71 (30%), Positives = 31/71 (43%) Frame = +2 Query: 329 HSLGQSHPVKLVPFNPEFLDESVMWTESGDVGKGFRCIRMVNNIRLNFDALNGDKDHGGV 508 H+ Q + + P E D+ V+ TE GD+G G R + N I FD L + Sbjct: 52 HAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNG-RFLDPRNKISFKFDHLRKEASDPQP 110 Query: 509 HDGTTVVLWEW 541 D T L +W Sbjct: 111 ED-TESALKQW 120
>XYNA_STRLI (P26514) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 477 Score = 30.8 bits (68), Expect = 6.2 Identities = 17/56 (30%), Positives = 22/56 (39%) Frame = +2 Query: 488 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIF 655 D DGT + LW+ G NQ W GE G G S+ V+I+ Sbjct: 366 DVPDASTSDGTQLQLWDCHSGTNQQWAATDAGELRVYGDKCLDAAGTSNGSKVQIY 421
>RBL1_HUMAN (P28749) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1068 Score = 30.8 bits (68), Expect = 6.2 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = -2 Query: 504 PPWSLSPL---RASKLRRMLFTMRMQRKPLPTSPLSVHITDSSRNSGLNGTSFTGWDWPR 334 P +SPL R ++R ++R +PL SP+SVH SS +G G D P+ Sbjct: 610 PLMPMSPLMHPRVKEVRTDSGSLRRDMQPL--SPISVHERYSSPTAGSAKRRLFGEDPPK 667 Query: 333 ECLTARPVALLTMAKAGLPSSSL 265 E L + + T K PSSS+ Sbjct: 668 EMLMDKIITEGTKLKIA-PSSSI 689
>ROK1_CANAL (Q9Y7C4) ATP-dependent RNA helicase CHR1 (EC 3.6.1.-)| Length = 578 Score = 30.8 bits (68), Expect = 6.2 Identities = 18/62 (29%), Positives = 25/62 (40%) Frame = +2 Query: 572 LPWGEEAYAGGSANAPRGGSSEPTVRIFCKADEGFSATVRNGTVVLAPSNPRDEYQHWXK 751 +P +AY RGG + V F K D+ + N V+ S D Y W + Sbjct: 455 VPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILN---VMKQSGCNDGYSQWME 511 Query: 752 DM 757 DM Sbjct: 512 DM 513
>YAET_SALCH (Q57T31) Outer membrane protein assembly factor yaeT precursor| Length = 805 Score = 30.4 bits (67), Expect = 8.1 Identities = 28/84 (33%), Positives = 36/84 (42%) Frame = +2 Query: 488 DKDHGGVHDGTTVVLWEWAKGDNQSWKILPWGEEAYAGGSANAPRGGSSEPTVRIFCKAD 667 D DH V G T W GD K +P+ E YAGGS+ RG S I KA Sbjct: 618 DNDHKWVVLGRT----RWGYGDGLGGKEMPFYENFYAGGSSTV-RGFQSN---TIGPKAV 669 Query: 668 EGFSATVRNGTVVLAPSNPRDEYQ 739 G+ A P++ D+Y+ Sbjct: 670 YGYGAHT-------DPNDNNDDYE 686
>VMSA_HPBDC (P30029) Major surface antigen precursor| Length = 365 Score = 30.4 bits (67), Expect = 8.1 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = -2 Query: 534 QRTTVVPSCTPPWSLSPLRASKL--RRMLFTMRMQRKPLPTSPL 409 + TT+ PS TPPW L P L + +L T + + P P P+ Sbjct: 146 ETTTIPPSSTPPWKLQPGDDPLLESKSLLETHPLYQNPEPAVPV 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,665,747 Number of Sequences: 219361 Number of extensions: 1428689 Number of successful extensions: 5425 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5164 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5420 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 10401601875 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
