ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25p03 |
|---|---|
| Clone Library Name | barley_pub |
>ILV5_ARATH (Q05758) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 591 Score = 241 bits (615), Expect = 1e-63 Identities = 120/132 (90%), Positives = 125/132 (94%) Frame = +2 Query: 2 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLG 181 AGVYVALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLG Sbjct: 459 AGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLG 518 Query: 182 SRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTAD 361 SRKWAPRFDYILTQQA V VD A IN+DLISNF SDPVHGAIEVCA+LRPTVDISV AD Sbjct: 519 SRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPAD 578 Query: 362 ADFVRPELRQSA 397 ADFVRPELRQS+ Sbjct: 579 ADFVRPELRQSS 590
>ILV5_PEA (O82043) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 581 Score = 238 bits (607), Expect = 1e-62 Identities = 118/130 (90%), Positives = 124/130 (95%) Frame = +2 Query: 2 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLG 181 AGV+VA+MMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLG Sbjct: 449 AGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLG 508 Query: 182 SRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTAD 361 SRKWAPRFDYILTQQA V VD APINQDLISNF+SDPVHGAI+VCAELRPT+DISV A Sbjct: 509 SRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAA 568 Query: 362 ADFVRPELRQ 391 ADFVRPELRQ Sbjct: 569 ADFVRPELRQ 578
>ILV5_SPIOL (Q01292) Ketol-acid reductoisomerase, chloroplast precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 595 Score = 237 bits (605), Expect = 2e-62 Identities = 117/131 (89%), Positives = 125/131 (95%) Frame = +2 Query: 2 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLG 181 AGVYVALMMAQIE+LRKKGHSYSEIINESVIE+VDSLNPFMHARGV+FMVDNCSTTARLG Sbjct: 465 AGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLG 524 Query: 182 SRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVTAD 361 SRKWAPRFDYIL+QQA V VD APINQDLISNF+SDPVH AI VCA+LRP+VDISVTAD Sbjct: 525 SRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTAD 584 Query: 362 ADFVRPELRQS 394 ADFVRPELRQ+ Sbjct: 585 ADFVRPELRQA 595
>ILV5_NEUCR (P38674) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 402 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/62 (51%), Positives = 43/62 (69%) Frame = +2 Query: 20 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 199 + +AQ EVLR++GHS SE NE+V E+ SL P + A G+ +M D CSTTAR G+ W P Sbjct: 276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTP 335 Query: 200 RF 205 +F Sbjct: 336 KF 337
>ILV5_SCHPO (P78827) Probable ketol-acid reductoisomerase, mitochondrial| precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 404 Score = 62.4 bits (150), Expect = 9e-10 Identities = 30/62 (48%), Positives = 41/62 (66%) Frame = +2 Query: 20 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 199 L +AQ +VLR++GHS +E NE+V E+ SL P + G+ +M CSTTAR G+ W P Sbjct: 277 LFLAQYQVLRERGHSPAEAFNETVEEATQSLYPLIGKYGLDYMFAACSTTARRGAIDWTP 336 Query: 200 RF 205 RF Sbjct: 337 RF 338
>ILV5_YEAST (P06168) Ketol-acid reductoisomerase, mitochondrial precursor (EC| 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 395 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = +2 Query: 20 LMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAP 199 + +AQ +VLR+ GHS SE NE+V E+ SL P + G+ +M D CSTTAR G+ W P Sbjct: 270 MFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARRGALDWYP 329 Query: 200 RF 205 F Sbjct: 330 IF 331
>AKA10_HUMAN (O43572) A kinase anchor protein 10, mitochondrial precursor| (Protein kinase A-anchoring protein 10) (PRKA10) (Dual specificity A kinase-anchoring protein 2) (D-AKAP-2) Length = 662 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = -2 Query: 581 NRTNLT---FIIREETETTHSIQPQQGALST*HSSSQVQTASRTHTLQSMNCP--PIKK 420 NRTN T ++ +E ++ HS++ + T S + Q +S T T+ S N P P+K+ Sbjct: 227 NRTNSTQNHLLLSQECDSAHSLRLEMARAGTHQVSMETQESSSTLTVASRNSPASPLKE 285
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = -3 Query: 355 RHRDVDGGPQLGADLDGAVDGVRHEVA---DEVLVDGRILVHRHKR-LLGQDVVE 203 R+RD +G PQ+ A L+G + R VA + DG ++V R +G+DV+E Sbjct: 362 RYRDENGKPQIAATLNGTLATTRWLVAILENNQQADGSVIVPEALRPFVGKDVLE 416
>ICAA_STAAW (Q8NUI7) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAU (Q9RQP9) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAS (Q6G608) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAR (Q6GDD8) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAN (Q7A351) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAM (Q99QX3) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ICAA_STAAC (Q5HCN1) Biofilm PIA synthesis N-glycosyltransferase icaA (EC| 2.4.-.-) (Intercellular adhesion protein A) Length = 412 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +2 Query: 203 FDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAI 310 +DY++ A VD+DAP +I NF DP GA+ Sbjct: 127 YDYVMCLDADTIVDQDAPYY--MIENFKHDPKLGAV 160
>ILVC_DEHE1 (Q3Z891) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 30.0 bits (66), Expect = 5.2 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Frame = +2 Query: 5 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 184 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 185 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 313 PR ++ ++ + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEETYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 314 VCAELR 331 V AELR Sbjct: 317 VGAELR 322
>ILVC_DEHSC (Q3ZXI2) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 332 Score = 29.3 bits (64), Expect = 8.9 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Frame = +2 Query: 5 GVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGS 184 G +L+ A E L + G+ E+ + + + M+ G+A+M D+ S TA+ G Sbjct: 201 GGTTSLVKAGFETLVEAGYQ-PEVAYFECLHELKLIVDLMYQGGIAYMRDSISDTAKYGD 259 Query: 185 RKWAPRFDYILTQQAFVTVDKDAPINQD-------LISNFMSDPVHGAI----------E 313 PR ++ + + T+ + QD ++ N PV+ ++ E Sbjct: 260 FTRGPR---VINEDTYETMGEILGEIQDGSFAKEWILENQAGRPVYNSLRRMESEHLIEE 316 Query: 314 VCAELR 331 V AELR Sbjct: 317 VGAELR 322
>FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Flocculin-1)| Length = 1537 Score = 29.3 bits (64), Expect = 8.9 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Frame = -1 Query: 546 NGDDSLDPTPTGGSLYLTQQLTGSNS*SHAYITVHELSTHQKTTLQTRI*ADCRSSGRTK 367 + + S PT + SL L T S + + T ++TTL T C S T+ Sbjct: 1191 SSESSKSPTYSSSSLPLVTSATTSQETASSLPPATTTKTSEQTTLVTV--TSCESHVCTE 1248 Query: 366 SAS-AVTEMSTVGLSSAQTSMAPW 298 S S A+ +TV +S T W Sbjct: 1249 SISPAIVSTATVTVSGVTTEYTTW 1272
>FIT3_YEAST (Q08907) Facilitator of iron transport 3 precursor| Length = 204 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/74 (22%), Positives = 38/74 (51%) Frame = -1 Query: 456 YITVHELSTHQKTTLQTRI*ADCRSSGRTKSASAVTEMSTVGLSSAQTSMAPWTGSDMKL 277 ++ E S++ + T ++ +S + +A+ E S+ SS+ ++ +TG+ + Sbjct: 128 FVWTGEGSSNTWSPSSTSTSSEAATSSASTTATTTAETSSSATSSSTAELSSYTGAADAI 187 Query: 276 LMRSWLMGASLSTV 235 + LMGA+L+ V Sbjct: 188 TAGTGLMGAALAAV 201
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 433 HPSKNNSSDPNLGRLPELRTHEVSIGRHRDVDGGP 329 HP+ + SDP L R P L H + G D GP Sbjct: 862 HPTGSRLSDPRLSRDPRLSRHAETSGGSGPGDSGP 896 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,848,086 Number of Sequences: 219361 Number of extensions: 1451520 Number of successful extensions: 4585 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4584 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
