Clone Information

BLAST Search Result

Clone Name	basd25o23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Y1714_ARATH (Q8LE98) Hypothetical protein At1g17140	37	0.038
2	VG22_ICHV1 (Q00105) Hypothetical gene 22 protein	36	0.084
3	BPS2_ACIAM (P32985) Protein bps2	35	0.14
4	SMC4_XENLA (P50532) Structural maintenance of chromosome 4 (Chro...	35	0.14
5	DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polype...	34	0.24
6	USO1_YEAST (P25386) Intracellular protein transport protein USO1...	33	0.42
7	CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinas...	33	0.54
8	DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2...	32	1.6
9	DPO3_BACSU (P13267) DNA polymerase III polC-type (EC 2.7.7.7) (P...	32	1.6
10	IF2_BACTN (Q8A2A1) Translation initiation factor IF-2	32	1.6
11	SYCP1_RAT (Q03410) Synaptonemal complex protein 1 (SCP-1)	31	2.1
12	MYSP_SCHMA (P06198) Paramyosin	31	2.1
13	SYCP1_MOUSE (Q62209) Synaptonemal complex protein 1 (SCP-1)	31	2.7
14	RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase	31	2.7
15	CLPB_LISMO (Q8Y570) Chaperone clpB	30	3.5
16	CLPB_LISMF (Q71XF9) Chaperone clpB	30	3.5
17	CLPB_LISIN (Q929G7) Chaperone clpB	30	3.5
18	AKAP9_RABIT (Q28628) A-kinase anchor protein 9 (Protein kinase A...	30	3.5
19	MEDB_GIALA (Q08014) Median body protein	30	3.5
20	TMF1_HUMAN (P82094) TATA element modulatory factor (TMF)	30	3.5
21	CEP2_HUMAN (Q9BV73) Centrosomal protein 2 (Centrosomal Nek2-asso...	30	4.6
22	MOES_MOUSE (P26041) Moesin (Membrane-organizing extension spike ...	30	4.6
23	AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A...	30	4.6
24	TPM2_RAT (P58775) Tropomyosin beta chain (Tropomyosin 2) (Beta-t...	30	4.6
25	TPM2_RABIT (P58776) Tropomyosin beta chain (Tropomyosin 2) (Beta...	30	4.6
26	TPM2_MOUSE (P58774) Tropomyosin beta chain (Tropomyosin 2) (Beta...	30	4.6
27	TPM2_HUMAN (P07951) Tropomyosin beta chain (Tropomyosin 2) (Beta...	30	4.6
28	TPM1_BRARE (P13104) Tropomyosin 1 alpha chain (Alpha-tropomyosin)	30	4.6
29	C71B9_ARATH (O64718) Cytochrome P450 71B9 (EC 1.14.-.-)	30	6.0
30	PIL1_YEAST (P53252) Sphingolipid long chain base-responsive prot...	30	6.0
31	MOES_RAT (O35763) Moesin (Membrane-organizing extension spike pr...	30	6.0
32	FLOT1_RAT (Q9Z1E1) Flotillin-1 (Reggie-2) (REG-2)	30	6.0
33	FLOT1_MOUSE (O08917) Flotillin-1	30	6.0
34	CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere prot...	30	6.0
35	DYNA_XENLA (Q6PCJ1) Dynactin-1	29	7.9
36	EZRA_BACSU (O34894) Septation ring formation regulator ezrA	29	7.9
37	HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2...	29	7.9
38	UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Un...	29	7.9
39	TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoi...	29	7.9
40	PGK2_HORSE (Q8MIF7) Phosphoglycerate kinase, testis specific (EC...	29	7.9
41	FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote...	29	7.9
42	TPM4_RAT (P09495) Tropomyosin alpha-4 chain (Tropomyosin-4) (TM-4)	29	7.9
43	MYO3_SCHPO (O14157) Myosin type-2 heavy chain 2 (Myosin type II ...	29	7.9
44	P29_ECHGR (Q9U8G7) Hydatid disease diagnostic antigen P-29	29	7.9

>Y1714_ARATH (Q8LE98) Hypothetical protein At1g17140|
          Length = 344

 Score = 37.0 bits (84), Expect = 0.038
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = +1

Query: 412 ETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDEL 537
           E++L  AQ+EL   KEQL+NAE  + QA  EL K  K  + L
Sbjct: 71  ESQLGQAQEELRLLKEQLANAEAVKKQAQDELHKKSKKPNPL 112

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>VG22_ICHV1 (Q00105) Hypothetical gene 22 protein|
          Length = 1403

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
 Frame = +1

Query: 334 GEVRFSSDKSAARKPKAPQAEKMLA----KETELHLAQKELNKYKEQLSNAETARLQA-- 495
           G  R   D   A + K  Q+E  LA    K  EL  A K L K     S  ET  ++   
Sbjct: 726 GTARTKKDALEALQSKLTQSESQLAIEKLKVMELEAAAKRLGKSSVTKSEVETVEVRVNL 785

Query: 496 -LSELEKARKTVDEL 537
              EL + +KTVDEL
Sbjct: 786 LTEELARTKKTVDEL 800

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>BPS2_ACIAM (P32985) Protein bps2|
          Length = 582

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 13/50 (26%), Positives = 33/50 (66%)
 Frame = +1

Query: 388 QAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDEL 537
           +A+++L+K++E+    KEL++   ++S  + +R +  + +E  + T+D+L
Sbjct: 328 EADELLSKKSEIEKKLKELDQISSEISKLKMSRSELENRIESVKSTIDDL 377

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>SMC4_XENLA (P50532) Structural maintenance of chromosome 4|
           (Chromosome-associated protein C) (Chromosome assembly
           protein XCAP-C)
          Length = 1290

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 13/109 (11%)
 Frame = +1

Query: 265 KLEVGEIDTRAPFESVKAAVS-LFGEVRFSSDKSAARKPKAPQAEKMLAKET-ELHLAQK 438
           +L++ ++DTR   +  K+ V  L  +++   +K    K     ++K++A+ET +  L +K
Sbjct: 386 QLDLQDVDTREKLKHSKSKVKKLQKQLQKDKEKVDELKNVPANSQKIIAEETNKKDLLEK 445

Query: 439 ELNKYKEQLSNA------ETARLQALSELEKAR-----KTVDELTTKLD 552
           +  K +E+L N       ET  LQ   E+++       KTV+E  +K+D
Sbjct: 446 QKEKEEEKLKNVMDSLKKETQGLQEEKEVKEKELMEISKTVNEARSKMD 494

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>DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polypeptide)|
           (DP-150) (DAP-150) (p150-glued)
          Length = 1224

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 337 EVRFSSDKSAARKPKAPQAEKMLAKETELHLA-QKELNKYKEQLSNAETARLQALSELEK 513
           +V+   +++A  K    +   + A E + H+  QK++ K   +L +    R +   E+++
Sbjct: 352 QVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEKKNTELESLRQQREKLQEEVKQ 411

Query: 514 ARKTVDELTTKLD 552
           A KTVDEL  ++D
Sbjct: 412 AEKTVDELKEQVD 424

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>USO1_YEAST (P25386) Intracellular protein transport protein USO1 (Int-1)|
          Length = 1790

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 24/95 (25%), Positives = 48/95 (50%)
 Frame = +1

Query: 250  STDAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDKSAARKPKAPQAEKMLAKETELHL 429
            S ++E +++ E+     F+  K    L  +++ S DK++       ++EK+   + EL  
Sbjct: 1252 SVESETVKIKELQDECNFKE-KEVSELEDKLKASEDKNSKYLELQKESEKI---KEELDA 1307

Query: 430  AQKELNKYKEQLSNAETARLQALSELEKARKTVDE 534
               EL    E+++N   A+ ++ SEL + +KT  E
Sbjct: 1308 KTTELKIQLEKITNLSKAKEKSESELSRLKKTSSE 1342

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>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC|
           2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related
           kinase, arginine/serine-rich) (CrkRS)
          Length = 1490

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 51/175 (29%), Positives = 74/175 (42%), Gaps = 3/175 (1%)
 Frame = +1

Query: 1   SARGRSFRHRSDRLTPTSPPSPLCRRRPATPALSLWPLRRSGFLVYRRLGPLPEALVLTS 180
           S R  S   RS   +  SP SP  RRR ++P LS   L RS         PLP    + S
Sbjct: 306 SRRRSSSYERSGSYSGRSP-SPYGRRRSSSPFLSKRSLSRS---------PLPSRKSMKS 355

Query: 181 LCASTACI*YSSTVNMAMKVRPPSTDAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDK 360
              S A   YS   +   K +  S+ +    +  +  R P  S     SL  E+     +
Sbjct: 356 RSRSPA---YSRHSSSHSKKKRSSSRSRHSSISPV--RLPLNS-----SLGAELSRKKKE 405

Query: 361 SAARKPKAPQAEKMLAKETE---LHLAQKELNKYKEQLSNAETARLQALSELEKA 516
            AA    A  A KM  KE++   + L +KE +  + + S  E+ +L    +LEK+
Sbjct: 406 RAA----AAAAAKMDGKESKGSPVFLPRKENSSVEAKDSGLESKKLPRSVKLEKS 456

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>DNM3B_MOUSE (O88509) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)|
           (Dnmt3b) (DNA methyltransferase MmuIIIB) (DNA MTase
           MmuIIIB) (M.MmuIIIB)
          Length = 859

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/86 (27%), Positives = 41/86 (47%)
 Frame = +1

Query: 55  PPSPLCRRRPATPALSLWPLRRSGFLVYRRLGPLPEALVLTSLCASTACI*YSSTVNMAM 234
           P  P  +RRP    LSL+    +G+LV + LG   E  + + +CA +  +    TV    
Sbjct: 571 PAIPAAKRRPIR-VLSLFDGIATGYLVLKELGIKVEKYIASEVCAESIAV---GTVKHEG 626

Query: 235 KVRPPSTDAEKLEVGEIDTRAPFESV 312
           +++  + D  K+    I+   PF+ V
Sbjct: 627 QIKYVN-DVRKITKKNIEEWGPFDLV 651

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>DPO3_BACSU (P13267) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1437

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 403 LAKETELHLAQKELNKYKEQ-LSNAETARLQALSELEKARKTVDE 534
           L  + E+ ++++E+ K++EQ L+  +   +QAL E+EK  K  DE
Sbjct: 161 LQLDAEIFVSEQEVQKFREQKLAEDQERAMQALIEMEKKDKESDE 205

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>IF2_BACTN (Q8A2A1) Translation initiation factor IF-2|
          Length = 1040

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
 Frame = +1

Query: 211 SSTVNMAMKVRPPSTDAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDKSAARKPKAPQ 390
           +S  N   K+R P   A+   +G+ID  A  +S +       E R    +    K K  Q
Sbjct: 246 ASKENEVFKIRQPELGAKINVIGQIDLAALNQSTRPKKKSKEEKR----REREEKEKVRQ 301

Query: 391 AEKMLAKETELHLAQKELNKYKE---QLSNAETARLQALSELEKARKTVDELTT 543
            +K L KE  +   +KE +K  +   + +NA+ AR +  + + K +  V+ + T
Sbjct: 302 DQKKLMKEAIIKEIRKEDSKQAKPGVKDNNADAAR-KKRNRINKEKVDVNNVAT 354

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>SYCP1_RAT (Q03410) Synaptonemal complex protein 1 (SCP-1)|
          Length = 997

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
 Frame = +1

Query: 358 KSAARKPKAPQAEKMLAKETELHLA------QKELNKYKEQLSNAETARLQALSELEKAR 519
           K ++ + K   A ++   + EL LA      ++ +N Y++++   + +  + L E+EKA+
Sbjct: 649 KKSSAENKQLNAYEIKVNKLELELASTKQKFEEMINNYQKEIEIKKISEEKLLGEVEKAK 708

Query: 520 KTVDE 534
            TVDE
Sbjct: 709 ATVDE 713

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>MYSP_SCHMA (P06198) Paramyosin|
          Length = 866

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 370 RKPKAPQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTKL 549
           R  +A +    + +   L LA  E+ + +  L N E  R  A +ELE+A+  V ELT ++
Sbjct: 579 RLREAAENNLQITEHKRLQLAN-EIEEIRSTLENLERLRKHAETELEEAQSRVSELTIQV 637

Query: 550 D 552
           +
Sbjct: 638 N 638

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>SYCP1_MOUSE (Q62209) Synaptonemal complex protein 1 (SCP-1)|
          Length = 993

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
 Frame = +1

Query: 358 KSAARKPKAPQAEKMLAKETELHLA------QKELNKYKEQLSNAETARLQALSELEKAR 519
           K ++ + K   A ++   + EL L       ++  N Y++++ N + +  + L E+EKA+
Sbjct: 645 KKSSAEIKQLNAYEIKVSKLELELESTKQRFEEMTNNYQKEIENKKISEGKLLGEVEKAK 704

Query: 520 KTVDE 534
            TVDE
Sbjct: 705 ATVDE 709

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>RAD50_HALVO (P62133) DNA double-strand break repair rad50 ATPase|
          Length = 893

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 421 LHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTK 546
           L+  + EL+   E++SN E+ R +A S L+ A  T+DE   K
Sbjct: 208 LNALESELDSLDEEISNYESQRDKAKSALDAAEATLDEHAEK 249

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>CLPB_LISMO (Q8Y570) Chaperone clpB|
          Length = 866

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 382 APQAEKMLAKETELHLAQKELNKYKE---QLSNAETARLQALSELEKARKTVDELTTKLD 552
           A + EK  A E  L + Q+EL  YKE   Q+ +   +    +S++ + R+ +D L  +L+
Sbjct: 430 ALKEEKDPASERRLEILQRELADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELE 489

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>CLPB_LISMF (Q71XF9) Chaperone clpB|
          Length = 866

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 382 APQAEKMLAKETELHLAQKELNKYKE---QLSNAETARLQALSELEKARKTVDELTTKLD 552
           A + EK  A E  L + Q+EL  YKE   Q+ +   +    +S++ + R+ +D L  +L+
Sbjct: 430 ALKEEKDPASERRLEILQRELADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELE 489

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>CLPB_LISIN (Q929G7) Chaperone clpB|
          Length = 866

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +1

Query: 382 APQAEKMLAKETELHLAQKELNKYKEQLSNAET---ARLQALSELEKARKTVDELTTKLD 552
           A + EK  A E  L + Q+EL  YKE+ +  ++   +    +S++ + R+ +D L  +L+
Sbjct: 430 ALKEEKDPASERRLEMLQRELADYKEEANKMKSKWESEKSEISKIREVREQIDHLRHELE 489

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>AKAP9_RABIT (Q28628) A-kinase anchor protein 9 (Protein kinase A-anchoring|
           protein 9) (PRKA9) (A-kinase anchor protein 120 kDa)
           (AKAP 120) (Fragment)
          Length = 1087

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = +1

Query: 328 LFGEVRFSSDKSAARKPKAPQ--------AEKMLAKETELHLAQKELNKYKEQLSNAETA 483
           +FGE+     +SAA K +            E++L KET +    KEL+  ++QL+ AE  
Sbjct: 700 VFGELEALRAESAAPKGELANYKELAEKLQEELLVKETNMASLPKELSHVRDQLTEAED- 758

Query: 484 RLQALSELE 510
           +L   SE E
Sbjct: 759 KLSHFSEKE 767

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>MEDB_GIALA (Q08014) Median body protein|
          Length = 857

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = +1

Query: 238 VRPPSTDAEKLEVGEIDTRAPFESVKA-AVSLFGEVRFSSDKSAARKPKAPQAEKMLAKE 414
           +R   +   +LE    D R   + ++  A  +    R+S++++   + KA QAE++L ++
Sbjct: 278 LRAQKSIVTRLEAENADLRRELQDIRGRAQEMSASQRYSANQAQELQEKAMQAEELLQQK 337

Query: 415 TELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDEL 537
            EL   +++L++  E+    E A       L   R+  DE+
Sbjct: 338 IEL---RRQLHEALERADAGEAA-------LRDKRRLEDEI 368

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>TMF1_HUMAN (P82094) TATA element modulatory factor (TMF)|
          Length = 1093

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +1

Query: 400 MLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTKLD 552
           +L   T ++  Q  L+K  EQ   AE+ + +ALSE E   KTV+ L  KL+
Sbjct: 410 ILVSSTPINEGQTVLDKVAEQCEPAES-QPEALSEKEDVCKTVEFLNEKLE 459

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>CEP2_HUMAN (Q9BV73) Centrosomal protein 2 (Centrosomal Nek2-associated protein|
           1) (C-NAP1) (Centrosome protein 250)
           (Centrosome-associated protein CEP250)
          Length = 2442

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 409 KETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVD 531
           ++ ELHLA +E  + +E L   E  + ++LSEL   R+ ++
Sbjct: 510 QQEELHLAVRERERLQEMLMGLEAKQSESLSELITLREALE 550

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>MOES_MOUSE (P26041) Moesin (Membrane-organizing extension spike protein)|
          Length = 576

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
 Frame = +1

Query: 256 DAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDKSAARKPKAPQAEKMLAKETE----- 420
           + EK E+ E   +   ++ KA   L  + R + +    RK    +AEK LAKE +     
Sbjct: 340 EREKEELMEKLKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEK-LAKERQEAEEA 398

Query: 421 ---LHLAQKELNKYKEQLSNAETARLQALSELEKARK 522
              L  A ++  K +EQL++        +S+LE ARK
Sbjct: 399 KEALLQASRDQKKTQEQLASEMAELTARISQLEMARK 435

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>AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A-anchoring|
            protein 9) (PRKA9) (A-kinase anchor protein 450 kDa)
            (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP 350)
            (hgAKAP 350) (AKAP 120-like protein) (Hyperion protein)
            (Yotiao protei
          Length = 3911

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = +1

Query: 364  AARKPKAPQA-EKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKT 525
            A+ K KA +  E++L KET +   QK+L++ ++ L+ A+    + LS LEK  +T
Sbjct: 2718 ASYKEKAEKLQEELLVKETNMTSLQKDLSQVRDHLAEAK----EKLSILEKEDET 2768

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>TPM2_RAT (P58775) Tropomyosin beta chain (Tropomyosin 2) (Beta-tropomyosin)|
          Length = 284

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
 Frame = +1

Query: 223 NMAMKVRPPSTDAEKLEVGEI----------DTRAPFESV-KAAVSLFGEVRFSSDKSAA 369
           N AMK      D EK+E+ E+          D+   +E V +  V L GE+  S +++  
Sbjct: 132 NRAMK------DEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEV 185

Query: 370 RKPKA------------------PQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQA 495
            + K                    QA+K   KE +    ++E+   +E+L  AET    A
Sbjct: 186 AESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKY---EEEIKLLEEKLKEAETRAEFA 242

Query: 496 LSELEKARKTVDEL 537
              + K  KT+D+L
Sbjct: 243 ERSVAKLEKTIDDL 256

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>TPM2_RABIT (P58776) Tropomyosin beta chain (Tropomyosin 2) (Beta-tropomyosin)|
          Length = 284

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
 Frame = +1

Query: 223 NMAMKVRPPSTDAEKLEVGEI----------DTRAPFESV-KAAVSLFGEVRFSSDKSAA 369
           N AMK      D EK+E+ E+          D+   +E V +  V L GE+  S +++  
Sbjct: 132 NRAMK------DEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEV 185

Query: 370 RKPKA------------------PQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQA 495
            + K                    QA+K   KE +    ++E+   +E+L  AET    A
Sbjct: 186 AESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKY---EEEIKLLEEKLKEAETRAEFA 242

Query: 496 LSELEKARKTVDEL 537
              + K  KT+D+L
Sbjct: 243 ERSVAKLEKTIDDL 256

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>TPM2_MOUSE (P58774) Tropomyosin beta chain (Tropomyosin 2) (Beta-tropomyosin)|
          Length = 284

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
 Frame = +1

Query: 223 NMAMKVRPPSTDAEKLEVGEI----------DTRAPFESV-KAAVSLFGEVRFSSDKSAA 369
           N AMK      D EK+E+ E+          D+   +E V +  V L GE+  S +++  
Sbjct: 132 NRAMK------DEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEV 185

Query: 370 RKPKA------------------PQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQA 495
            + K                    QA+K   KE +    ++E+   +E+L  AET    A
Sbjct: 186 AESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKY---EEEIKLLEEKLKEAETRAEFA 242

Query: 496 LSELEKARKTVDEL 537
              + K  KT+D+L
Sbjct: 243 ERSVAKLEKTIDDL 256

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>TPM2_HUMAN (P07951) Tropomyosin beta chain (Tropomyosin 2) (Beta-tropomyosin)|
          Length = 284

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 29/134 (21%)
 Frame = +1

Query: 223 NMAMKVRPPSTDAEKLEVGEI----------DTRAPFESV-KAAVSLFGEVRFSSDKSAA 369
           N AMK      D EK+E+ E+          D+   +E V +  V L GE+  S +++  
Sbjct: 132 NRAMK------DEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEV 185

Query: 370 RKPKA------------------PQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQA 495
            + K                    QA+K   KE +    ++E+   +E+L  AET    A
Sbjct: 186 AESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKY---EEEIKLLEEKLKEAETRAEFA 242

Query: 496 LSELEKARKTVDEL 537
              + K  KT+D+L
Sbjct: 243 ERSVAKLEKTIDDL 256

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>TPM1_BRARE (P13104) Tropomyosin 1 alpha chain (Alpha-tropomyosin)|
          Length = 284

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 388 QAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTKL 549
           QAEK  AKE +    ++E+    ++L  AET    A   + K  KT+D+L  +L
Sbjct: 210 QAEKYSAKEDKY---EEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDEL 260

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>C71B9_ARATH (O64718) Cytochrome P450 71B9 (EC 1.14.-.-)|
          Length = 500

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 18/153 (11%)
 Frame = +1

Query: 16  SFRHRSDRLTPTSPPSP-------LCRRRPATPALSLWPLRRS-GFLVYRRLGPLPEALV 171
           +F+H+  R     PPSP          +    P  SLW L ++ G ++  +LG +P  +V
Sbjct: 19  AFKHKKRRTNQQQPPSPPGFPIIGNLHQLGELPHQSLWSLSKTYGPVMLLKLGSVPTVVV 78

Query: 172 LTSLCASTACI*YSSTVNMAMKV-------RPPSTDAEKLEVGEIDTR-APFESV-KAAV 324
            +           S T    +K+       RP    A++L    +D   +PF+   K   
Sbjct: 79  SS-----------SETAKQVLKINDLHCCSRPSLAGAKELSYNYLDIAFSPFDDYWKELR 127

Query: 325 SLFGEVRFSSDKSAARKP-KAPQAEKMLAKETE 420
            +  +  FS+ +  + +P K  +  K++   TE
Sbjct: 128 RICVQELFSAKRVHSIQPIKEEEVRKLIVSATE 160

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>PIL1_YEAST (P53252) Sphingolipid long chain base-responsive protein PIL1|
          Length = 339

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +1

Query: 352 SDKSAARKPKAPQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQA 495
           +DK A  K K PQ+ K+   E EL  A+ E    + QLSN   ++L+A
Sbjct: 150 TDKIAYLKYKDPQSPKIEVLEQELVRAEAESLVAEAQLSNITRSKLRA 197

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>MOES_RAT (O35763) Moesin (Membrane-organizing extension spike protein)|
          Length = 576

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
 Frame = +1

Query: 256 DAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDKSAARKPKAPQAEKMLAKETE----- 420
           + EK E+ E   +   ++ KA   L  + R + +    RK    +AEK LAKE +     
Sbjct: 340 EREKEELMEKLKQIEEQTKKAQQELEEQTRRALELEQERKRAQSEAEK-LAKERQEAEEA 398

Query: 421 ---LHLAQKELNKYKEQLSNAETARLQALSELEKARK 522
              L  A ++  K +EQL++        +S+LE ARK
Sbjct: 399 KEALLQASRDQKKTQEQLASEMAELTARVSQLEMARK 435

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>FLOT1_RAT (Q9Z1E1) Flotillin-1 (Reggie-2) (REG-2)|
          Length = 428

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 388 QAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKAR 519
           +A+++  +E E+   +KEL     + + AE  RL+ L+E EKA+
Sbjct: 261 RAQQVAVQEQEIARREKELEARVRKPAEAERYRLERLAEAEKAQ 304

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>FLOT1_MOUSE (O08917) Flotillin-1|
          Length = 428

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 388 QAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKAR 519
           +A+++  +E E+   +KEL     + + AE  RL+ L+E EKA+
Sbjct: 261 RAQQVAVQEQEIARREKELEARVRKPAEAERYRLERLAEAEKAQ 304

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>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F)|
           (Mitosin) (AH antigen)
          Length = 3210

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +1

Query: 373 KPKAPQAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTKLD 552
           K K   + ++  KE++++  + +LN  K+Q+   E    +  SELE++++        L+
Sbjct: 81  KTKQKISHELQVKESQVNFQEGQLNSGKKQIEKLEQELKRCKSELERSQQAAQSADVSLN 140

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>DYNA_XENLA (Q6PCJ1) Dynactin-1|
          Length = 1232

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 337 EVRFSSDKSAARKPKAPQAEKMLAKETELHL-AQKELNKYKEQLSNAETARLQALSELEK 513
           +V+   +++A  K    +   + A E + H+  QK++ K   +L      + +   E   
Sbjct: 317 QVKQLEEQNARLKEALVRMRDLSASEKQEHIKVQKQMEKKNTELDTLRQQKEKLQEEASH 376

Query: 514 ARKTVDELTTKLD 552
             KT+DEL  ++D
Sbjct: 377 MEKTIDELKEQVD 389

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>EZRA_BACSU (O34894) Septation ring formation regulator ezrA|
          Length = 562

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 256 DAEKLEVGEIDTRAPFESVKAAVS-LFGEVRFSSDKSAARKPKAPQAEKMLAKETELHLA 432
           ++ +L  GE+  +  FE     +  L   V+   D  A     +   E++ + E ++   
Sbjct: 337 ESYRLTAGELGKQQAFEKRLDEIGKLLSSVKDKLD--AEHVAYSLLVEEVASIEKQIEEV 394

Query: 433 QKELNKYKEQLSNAETARLQALSELEKARKTVDE 534
           +KE  +Y+E L       LQA   L   +KT+ E
Sbjct: 395 KKEHAEYRENLQALRKEELQARETLSNLKKTISE 428

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>HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2 (Cytadherence|
           accessory protein 2)
          Length = 1818

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 388 QAEKMLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTK 546
           Q E +L  ETE    QK + ++K +      A L    EL + R+ +D+L T+
Sbjct: 379 QQESLLKLETEHKQLQKRIGEFKIESEAKSEALLIQERELLEKRREIDDLLTQ 431

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>UNC18_CAEEL (P34815) Putative acetylcholine regulator unc-18 (Uncoordinated|
           protein 18)
          Length = 591

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 400 MLAKETELHLAQKELNKYKEQLSNAETARLQALSELEKARKTVDELTTKLD 552
           ML K    H  +KELNK+   +S AE    Q    ++K  K   +L+T +D
Sbjct: 328 MLIKRMPQH--KKELNKFSTHISLAEECMKQYQQGVDKLCKVEQDLSTGID 376

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>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1473

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 25/94 (26%), Positives = 44/94 (46%)
 Frame = +1

Query: 223  NMAMKVRPPSTDAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDKSAARKPKAPQAEKM 402
            N+A  V+P +    K +  E +T     S     +   EV     +  A+K KAP A K 
Sbjct: 1236 NVAEVVKPKARQGAKKKASESETTEASHSAMDTDNNVAEVVKPKGRQGAKK-KAPAAAKE 1294

Query: 403  LAKETELHLAQKELNKYKEQLSNAETARLQALSE 504
            + ++  L LAQ+ L +Y    + A++++    S+
Sbjct: 1295 VEEDEMLDLAQR-LAQYNFGSAPADSSKTAETSK 1327

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>PGK2_HORSE (Q8MIF7) Phosphoglycerate kinase, testis specific (EC 2.7.2.3)|
          Length = 416

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 25/96 (26%), Positives = 42/96 (43%)
 Frame = +1

Query: 235 KVRPPSTDAEKLEVGEIDTRAPFESVKAAVSLFGEVRFSSDKSAARKPKAPQAEKMLAKE 414
           K + PS +  K E G+I      E+ +A++S  G+V  +     A +  +      L ++
Sbjct: 130 KGQDPSGNKLKAEAGKI------EAFRASLSKLGDVYVNDAFGTAHRAHSSMVGINLPQK 183

Query: 415 TELHLAQKELNKYKEQLSNAETARLQALSELEKARK 522
               L +KEL  + + L N E   L  L   + A K
Sbjct: 184 ASGFLMKKELEYFAKALENPERPFLAILGGAKVADK 219

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>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 298 PFESVKAAVSLFGEVRFSSDKSAARKPKAPQAEKMLAKETEL 423
           P E   A      +  FS D      P APQA ++LAK +EL
Sbjct: 521 PGELTMAGTLFLPQYVFSPDAGTTTVPTAPQASEILAKMSEL 562

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>TPM4_RAT (P09495) Tropomyosin alpha-4 chain (Tropomyosin-4) (TM-4)|
          Length = 247

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 26/135 (19%)
 Frame = +1

Query: 223 NMAMKVRPPSTDAEKLEVGEIDTRAP----------FESV-KAAVSLFGEVRFSSDKSAA 369
           N AMK      D EK+E+ E+  +            +E V +  V L GE+  + +++  
Sbjct: 95  NRAMK------DEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEV 148

Query: 370 RKPKAPQAEKMLAKETE----LHLAQKELN----KYKEQ-------LSNAETARLQALSE 504
            + K+   E+ L   T     L  A ++ +    KY+E+       L  AET    A   
Sbjct: 149 SELKSSDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERT 208

Query: 505 LEKARKTVDELTTKL 549
           + K  KT+D+L  KL
Sbjct: 209 VSKLEKTIDDLEEKL 223

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>MYO3_SCHPO (O14157) Myosin type-2 heavy chain 2 (Myosin type II heavy chain 2)|
          Length = 2104

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 442  LNKYKEQLSNAETARLQALSELEKARKTVDELTTKL 549
            +NKY+EQL+  ++    A S L KA ++ + LT +L
Sbjct: 1630 VNKYREQLAMVQSLNEHAESSLSKAERSKNYLTGRL 1665

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>P29_ECHGR (Q9U8G7) Hydatid disease diagnostic antigen P-29|
          Length = 238

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
 Frame = +1

Query: 301 FESVKAAVSLFGEVRFSSDKSAARKPKA-PQAEKMLAKETELH----LAQKELNK----- 450
           F+  K  ++   ++  + ++ A++  KA PQ  KML + +++H     A+K  N      
Sbjct: 70  FQKNKEKITTTDKLGTALEQVASQSEKAAPQLSKMLTEASDVHQRMATARKNFNSEVNTT 129

Query: 451 YKEQLSNAETARLQALSELEKARKTVDELTTKLD 552
           + E L N        LSE +KA+  ++E+   LD
Sbjct: 130 FIEDLKNFLNT---TLSEAQKAKTKLEEVRLDLD 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,276,236
Number of Sequences: 219361
Number of extensions: 1071403
Number of successful extensions: 4495
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 4240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4487
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result