ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25o22 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome... | 125 | 7e-26 | 2 | dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... | 125 | 7e-26 | 3 | dbj|AK066463.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 125 | 7e-26 | 4 | gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome... | 52 | 8e-04 | 5 | ref|XM_476089.1| Oryza sativa (japonica cultivar-group), predic... | 52 | 8e-04 | 6 | dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clon... | 52 | 8e-04 |
|---|
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 125 bits (63), Expect = 7e-26 Identities = 123/144 (85%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 1 aagcagaaaantatggaatttgncgtattgttccaccatcttcttgganaccaccatgtc 60 |||||||||| ||||||||||| |||||||||||||||||||||||| ||| || ||| Sbjct: 128076 aagcagaaaagtatggaatttgtcgtattgttccaccatcttcttggcgaccgccttgtt 128017 Query: 61 ctntaaaggagaagagcttttggaactgtacagannttaacacccgagttcaacaagtct 120 || | |||||||||| ||| ||| | |||||||| | || ||||| ||||||||||| | Sbjct: 128016 ctctgaaggagaagaacttctgggaatgtacagagttcaatacccgtgttcaacaagt-t 127958 Query: 121 gacaagcttcaaantcgggaaccc 144 ||||||||||||| ||||||||| Sbjct: 127957 gacaagcttcaaaaccgggaaccc 127934
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 125 bits (63), Expect = 7e-26 Identities = 123/144 (85%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 1 aagcagaaaantatggaatttgncgtattgttccaccatcttcttgganaccaccatgtc 60 |||||||||| ||||||||||| |||||||||||||||||||||||| ||| || ||| Sbjct: 13444613 aagcagaaaagtatggaatttgtcgtattgttccaccatcttcttggcgaccgccttgtt 13444554 Query: 61 ctntaaaggagaagagcttttggaactgtacagannttaacacccgagttcaacaagtct 120 || | |||||||||| ||| ||| | |||||||| | || ||||| ||||||||||| | Sbjct: 13444553 ctctgaaggagaagaacttctgggaatgtacagagttcaatacccgtgttcaacaagt-t 13444495 Query: 121 gacaagcttcaaantcgggaaccc 144 ||||||||||||| ||||||||| Sbjct: 13444494 gacaagcttcaaaaccgggaaccc 13444471 Score = 52.0 bits (26), Expect = 8e-04 Identities = 34/37 (91%) Strand = Plus / Plus Query: 12 tatggaatttgncgtattgttccaccatcttcttgga 48 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 5859677 tatggtatttgccgtattgtcccaccatcttcttgga 5859713
>dbj|AK066463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065F17, full insert sequence Length = 3421 Score = 125 bits (63), Expect = 7e-26 Identities = 123/144 (85%), Gaps = 1/144 (0%) Strand = Plus / Plus Query: 1 aagcagaaaantatggaatttgncgtattgttccaccatcttcttgganaccaccatgtc 60 |||||||||| ||||||||||| |||||||||||||||||||||||| ||| || ||| Sbjct: 334 aagcagaaaagtatggaatttgtcgtattgttccaccatcttcttggcgaccgccttgtt 393 Query: 61 ctntaaaggagaagagcttttggaactgtacagannttaacacccgagttcaacaagtct 120 || | |||||||||| ||| ||| | |||||||| | || ||||| ||||||||||| | Sbjct: 394 ctctgaaggagaagaacttctgggaatgtacagagttcaatacccgtgttcaacaagt-t 452 Query: 121 gacaagcttcaaantcgggaaccc 144 ||||||||||||| ||||||||| Sbjct: 453 gacaagcttcaaaaccgggaaccc 476
>gb|AC135427.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0617H07, complete sequence Length = 114135 Score = 52.0 bits (26), Expect = 8e-04 Identities = 34/37 (91%) Strand = Plus / Plus Query: 12 tatggaatttgncgtattgttccaccatcttcttgga 48 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 66441 tatggtatttgccgtattgtcccaccatcttcttgga 66477
>ref|XM_476089.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3717 Score = 52.0 bits (26), Expect = 8e-04 Identities = 34/37 (91%) Strand = Plus / Plus Query: 12 tatggaatttgncgtattgttccaccatcttcttgga 48 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 541 tatggtatttgccgtattgtcccaccatcttcttgga 577
>dbj|AK121381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H13, full insert sequence Length = 4316 Score = 52.0 bits (26), Expect = 8e-04 Identities = 34/37 (91%) Strand = Plus / Plus Query: 12 tatggaatttgncgtattgttccaccatcttcttgga 48 ||||| ||||| |||||||| |||||||||||||||| Sbjct: 740 tatggtatttgccgtattgtcccaccatcttcttgga 776 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 826,510 Number of Sequences: 3902068 Number of extensions: 826510 Number of successful extensions: 12242 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 12226 Number of HSP's gapped (non-prelim): 13 length of query: 238 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 216 effective length of database: 17,147,199,772 effective search space: 3703795150752 effective search space used: 3703795150752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
