ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26d19 |
|---|---|
| Clone Library Name | barley_pub |
>FMO2_MACMU (Q28505) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 35.4 bits (80), Expect = 0.16 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLEPTGY 517 G V+ ++ +I A S F+E +L + EN++ S KY+ P HLE + + Sbjct: 315 GTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIFPAHLEKSTF 365
>SOX9_PIG (O18896) Transcription factor SOX-9| Length = 509 Score = 35.4 bits (80), Expect = 0.16 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 4 HEAESSQPFPPASPHYPRAP--LPSAPVQIHAALPRNP 111 H S Q PP PH P+ P +P AP Q AALP+ P Sbjct: 333 HVWMSKQQAPPPPPHPPQQPPPVPQAPAQPQAALPQQP 370
>FMO2_PONPY (Q5REK0) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 35.0 bits (79), Expect = 0.21 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLE 505 G V+ ++ +I A S F+E +L + EN++ S KY+ P HLE Sbjct: 315 GTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIFPAHLE 361
>FMO2_PANTR (Q8HZ70) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 33.9 bits (76), Expect = 0.48 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLE 505 G V+ ++ +I A S F+E +L + EN++ S KY+ P HL+ Sbjct: 315 GTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIFPAHLD 361
>FMO2_HUMAN (Q99518) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 33.9 bits (76), Expect = 0.48 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLE 505 G V+ ++ +I A S F+E +L + EN++ S KY+ P HL+ Sbjct: 315 GTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIFPAHLD 361
>FMO2_GORGO (Q8HZ69) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 33.9 bits (76), Expect = 0.48 Identities = 16/47 (34%), Positives = 27/47 (57%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLE 505 G V+ ++ +I A S F+E +L + EN++ S KY+ P HL+ Sbjct: 315 GTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIFPAHLD 361
>PGKA_CRIFA (P25055) Phosphoglycerate kinase, glycosomal (EC 2.7.2.3)| (Phosphoglycerate kinase A) Length = 505 Score = 33.1 bits (74), Expect = 0.82 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Frame = +2 Query: 320 KRARFRADGGSPRPRGVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLH 499 KR R D P G +D D IR+ P++R +D +L H Sbjct: 23 KRVLIRVDFNVPTSSGGIDDDFR--IRSAIPTIR------------RIVDQGGICILISH 68 Query: 500 L-EPTGYNVDPVHQSPNEMSTEVQVPN 577 L PTG + D H + T VQ+PN Sbjct: 69 LGRPTGVDYDTAHAEQEKRQTPVQLPN 95
>ZN553_HUMAN (Q96MX3) Zinc finger protein 553| Length = 618 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = +1 Query: 4 HEAESSQPFPPAS---PHYPRAPLPSAPVQIHAALPRNPNQ 117 H E ++P PP++ PH P P+P AP A P P+Q Sbjct: 501 HRGERARPPPPSTLLRPHNPPGPVPMAPRPRVRAQPSGPSQ 541
>DDX3Y_PONPY (Q5RF43) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) Length = 658 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 375 STTPRGLGLPPSARKRARLEGGED-DASAWVCSSEKE 268 ST +G +PP R R +G D D+S W CS +K+ Sbjct: 31 STASKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKD 67
>ID4_HUMAN (P47928) DNA-binding protein inhibitor ID-4 (Inhibitor of DNA| binding 4) Length = 161 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 4 HEAESSQPFPPASPHYPRAPLPSAPVQIHAALPRNP 111 H A QP PPA PH+P P+AP PR P Sbjct: 111 HPALLRQPPPPAPPHHPAGTCPAAP-------PRTP 139
>DDX3Y_HUMAN (O15523) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) Length = 660 Score = 32.0 bits (71), Expect = 1.8 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 375 STTPRGLGLPPSARKRARLEGGED-DASAWVCSSEKE 268 ST +G +PP R R +G D D+S W CS +K+ Sbjct: 31 STASKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKD 67
>PER2_MOUSE (O54943) Period circadian protein 2 (mPER2)| Length = 1257 Score = 32.0 bits (71), Expect = 1.8 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +1 Query: 19 SQPFPPASPHYPRAPLPSAP 78 S PFPPA+P+ P+A LPS P Sbjct: 904 SYPFPPATPNLPQAFLPSQP 923
>ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) (Zinc finger protein 378) Length = 765 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = +1 Query: 1 RHEAESSQPFPPASPHYPRAPLPSAPVQIHAALPRNP 111 R A P PP +PH P P A IH LP P Sbjct: 666 RSPARQGLPSPPGTPHSPSYAGPKAVAFIHTDLPEPP 702
>FMO2_RABIT (P17635) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLEPTGY 517 G V+ D+ ++ A + F+E++L + E+++ S KY+ P LE + + Sbjct: 315 GTVEEDIDVIVFATGYTFAFPFLEESLVKIEDNMVSLYKYMFPPQLEKSTF 365
>FMO2_CAVPO (P36366) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) (FMO 1B1) Length = 534 Score = 30.4 bits (67), Expect = 5.3 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +2 Query: 365 GVVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLE 505 G V+ D+ ++ A + F+E++L + E+++ S KY+ P LE Sbjct: 315 GTVEEDIDVIVFATGYTFSFPFLEESLVKIEHNMVSLYKYMFPPQLE 361
>DRP1E_ARATH (Q9FNX5) Dynamin-related protein 1E (Dynamin-like protein E)| (Dynamin-like protein 4) (Dynamin-like protein DLP2) Length = 624 Score = 30.4 bits (67), Expect = 5.3 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +2 Query: 347 GSPRPRGVVDSDLVAVIRARFPSVRLEFIEKALEECENDLD 469 GS ++ L +VIR R PS+ L I K++EE E +LD Sbjct: 285 GSEYLAKLLSKHLESVIRTRIPSI-LSLINKSIEELERELD 324
>PER2_RAT (Q9Z301) Period circadian protein 2 (rPER2)| Length = 1257 Score = 30.4 bits (67), Expect = 5.3 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 19 SQPFPPASPHYPRAPLPSAP 78 S PFPPA+P+ P+A PS P Sbjct: 904 SYPFPPATPNLPQAFFPSQP 923
>TYPH_LEGPN (Q8RNP4) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 517 Score = 30.0 bits (66), Expect = 6.9 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 14/109 (12%) Frame = +2 Query: 368 VVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLEPTGYNVDP------ 529 V+D + + R S+ L ++++LEE N+L ++ L +P G+ + P Sbjct: 302 VIDIPVGPTAKVRNQSMAL-LLKQSLEEVGNELGLVVRALFTDGSQPVGHGIGPSLEARD 360 Query: 530 -------VHQSPNEMSTEVQVPNEGIAEC-NEVPAPVGSVLGAENLQSG 652 + +PN++ EC ++VP +G + + L+SG Sbjct: 361 VLAVLQGLPDAPNDLRERALTLAGAALECSSKVPPGLGKSIATQLLESG 409
>TYPH_LEGPH (Q5ZWR3) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 517 Score = 30.0 bits (66), Expect = 6.9 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 14/109 (12%) Frame = +2 Query: 368 VVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLEPTGYNVDP------ 529 V+D + + R S+ L ++++LEE N+L ++ L +P G+ + P Sbjct: 302 VIDIPVGPTAKVRNQSMAL-LLKQSLEEVGNELGLVVRALFTDGSQPVGHGIGPSLEARD 360 Query: 530 -------VHQSPNEMSTEVQVPNEGIAEC-NEVPAPVGSVLGAENLQSG 652 + +PN++ EC ++VP +G + + L+SG Sbjct: 361 VLAVLQGLPDAPNDLRERALTLAGAALECSSKVPPGLGKSIATQLLESG 409
>TYPH_LEGPA (Q5X2M8) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 517 Score = 30.0 bits (66), Expect = 6.9 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Frame = +2 Query: 368 VVDSDLVAVIRARFPSVRLEFIEKALEECENDLDSAMKYLLPLHLEPTGYNVDP------ 529 V+D + + R S+ L +++ LEE N+L ++ LL +P G+ + P Sbjct: 302 VIDIPVGPTAKVRNQSMAL-LLKQLLEEVGNELGLVVRTLLTDGSQPVGHGIGPSLEARD 360 Query: 530 -------VHQSPNEMSTEVQVPNEGIAEC-NEVPAPVGSVLGAENLQSG 652 + +PN++ EC ++VP +G + + L SG Sbjct: 361 VMAVLQGLPDAPNDLRERALTLAGAALECSSKVPPGLGKSIATQLLDSG 409
>SELD_PSEAE (Q9I383) Selenide, water dikinase (EC 2.7.9.3) (Selenophosphate| synthetase) (Selenium donor protein) Length = 344 Score = 30.0 bits (66), Expect = 6.9 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 372 TTPRGLGLPPSARKRARLEGGE-DDASAWVCSSEKEDARF 256 T P G+G+ +A K+ARL + A W+C+ + ARF Sbjct: 176 TKPLGIGILTTAEKKARLRAEDVGVARDWMCTLNRPGARF 215
>DDX3Y_PANTR (Q6GVM6) ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box| protein 3, Y-chromosomal) Length = 660 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -2 Query: 375 STTPRGLGLPPSARKRARLEGGED-DASAWVCSSEKE 268 S +G +PP R R +G D D+S W CS +K+ Sbjct: 31 SRASKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKD 67
>DBP7_ASPFU (Q4WV71) ATP-dependent RNA helicase dbp7 (EC 3.6.1.-)| Length = 758 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%) Frame = +1 Query: 7 EAESSQPFPPASPHYPRAPL-----PSAPV---QIHAALPRNPNQNAL 126 + + S+ PP+SPH AP PS PV ++H +LP+N + L Sbjct: 463 DTDKSEEKPPSSPHGTIAPATAFSNPSNPVTLFRLHGSLPQNVRTSTL 510 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,196,520 Number of Sequences: 219361 Number of extensions: 1476604 Number of successful extensions: 6316 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6293 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
