ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.039
3dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.039
4ref|XM_481521.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.15
5gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.15
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
7dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
8dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.15
9ref|XM_420930.1| PREDICTED: Gallus gallus similar to synaptotagm... 44 0.60
10emb|BX247871.7| Zebrafish DNA sequence from clone CH211-190P8, c... 44 0.60
11gb|DQ213756.1| Taeniopygia guttata clone 0062P0003B07 HIRA inter... 42 2.4
12gb|DQ213755.1| Taeniopygia guttata clone 0064P0010B05 HIRA inter... 42 2.4
13gb|AC164589.6| Mus musculus chromosome 8, clone RP24-363C11, com... 42 2.4
14gb|CP000088.1| Thermobifida fusca YX, complete genome 42 2.4
15emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 42 2.4
16dbj|AK112845.1| Ciona intestinalis cDNA, clone:citb006o14, full ... 42 2.4
17emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chr... 42 2.4
18gb|AC099723.16| Mus musculus chromosome 8, clone RP23-369P21, co... 42 2.4
19gb|BT017726.1| Zea mays clone EL01N0447F12.c mRNA sequence 40 9.4
20gb|BC053216.1| Danio rerio v-ral simian leukemia viral oncogene ... 40 9.4
21gb|AC092494.2| Drosophila melanogaster clone BACR23I18, complete... 40 9.4
22gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete... 40 9.4
23ref|XM_415397.1| PREDICTED: Gallus gallus similar to LIM homeobo... 40 9.4
24gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
25gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 9.4
26gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 9.4
27gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.4
28emb|AJ250987.1|ZMA250987 Zea mays mRNA for OCL5 protein (ocl5 gene) 40 9.4
29gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, com... 40 9.4
30gb|AC183543.3| Pan troglodytes BAC clone CH251-299H22 from chrom... 40 9.4
31gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p2... 40 9.4
32gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p2... 40 9.4
33emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 9.4
34gb|BC034976.2| Homo sapiens solute carrier organic anion transpo... 40 9.4
35emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 9.4
36emb|BX005025.16| Zebrafish DNA sequence from clone DKEY-67K20 in... 40 9.4
37dbj|AK131445.1| Homo sapiens cDNA FLJ16580 fis, clone TESTI2050780 40 9.4
38gb|AC141418.11| Pan troglodytes clone rp43-121l12, complete sequ... 40 9.4
39gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 9.4
40dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 9.4
41ref|NM_078705.2| Drosophila melanogaster penguin CG1685-RA (pen)... 40 9.4
42emb|BX005020.7| Zebrafish DNA sequence from clone DKEY-237D7 in ... 40 9.4
43gb|U39205.1|SCU39205 Saccharomyces cerevisiae chromosome XVI, le... 40 9.4
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
46gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, co... 40 9.4
47ref|XM_220535.3| PREDICTED: Rattus norvegicus similar to Related... 40 9.4
48dbj|AP004224.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
49emb|BX572082.4| Mouse DNA sequence from clone RP23-114B24 on chr... 40 9.4
50ref|XM_314316.2| Anopheles gambiae str. PEST ENSANGP00000001178 ... 40 9.4
51emb|AJ327595.1|HSA327595 Homo sapiens genomic sequence surroundi... 40 9.4
52ref|NM_201018.1| Danio rerio v-ral simian leukemia viral oncogen... 40 9.4
53gb|AY110048.1| Zea mays CL1207_1 mRNA sequence 40 9.4
54gb|AF132165.1|AF132165 Drosophila melanogaster clone LD21304 unk... 40 9.4
55gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 ... 40 9.4
56dbj|AP002812.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.4
57gb|AF017777.1|AF017777 Drosophila melanogaster tweety (tty), fli... 40 9.4
58emb|AL928610.8| Zebrafish DNA sequence from clone CH211-245P6, c... 40 9.4
59dbj|AP002358.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.4 
>dbj|AK102931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114H01, full
           insert sequence
          Length = 1222

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                       
Query: 505 acccacaggatataatgtggatcctgtgcatcaatctcccaatgaaatgtctactgaggt 564
           |||||||| || ||||||||||||| |  ||||||||||    | ||||||||||||| |
Sbjct: 362 acccacagaatgtaatgtggatcctatttatcaatctccatcaggaatgtctactgagct 421

                                 
Query: 565 tcaagtgcccaatgaaggtatt 586
           ||||||| |  |||||||||||
Sbjct: 422 tcaagtggctgatgaaggtatt 443



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 444 tggaagaatgtgaaaatgatttggattcagcaatgaagt 482
           |||| ||||||||||| ||||| ||||||||||| ||||
Sbjct: 301 tggaggaatgtgaaaacgattttgattcagcaataaagt 339



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 655 cacccaatgggttgagattcttatgaatgagatg 688
           |||||| ||||||||||||||| |||| ||||||
Sbjct: 512 cacccagtgggttgagattcttgtgaacgagatg 545



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 303 cgtcctcaccgccctccaagcgcgcacgcttccg 336
           ||||||| |||||||||||||||||  |||||||
Sbjct: 166 cgtcctccccgccctccaagcgcgcctgcttccg 199
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                           
Query: 505     acccacaggatataatgtggatcctgtgcatcaatctcccaatgaaatgtctactgaggt 564
               |||||||| || ||||||||||||| |  ||||||||||    | ||||||||||||| |
Sbjct: 1415692 acccacagaatgtaatgtggatcctatttatcaatctccatcaggaatgtctactgagct 1415633

                                   
Query: 565     tcaagtgcccaatgaaggta 584
               ||||||| |  |||||||||
Sbjct: 1415632 tcaagtggctgatgaaggta 1415613



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 444     tggaagaatgtgaaaatgatttggattcagcaatgaagt 482
               |||| ||||||||||| ||||| ||||||||||| ||||
Sbjct: 1415753 tggaggaatgtgaaaacgattttgattcagcaataaagt 1415715



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 303     cgtcctcaccgccctccaagcgcgcacgcttccg 336
               ||||||| |||||||||||||||||  |||||||
Sbjct: 1416954 cgtcctccccgccctccaagcgcgcctgcttccg 1416921



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 655     cacccaatgggttgagattcttatgaatgagatg 688
               |||||| ||||||||||||||| |||| ||||||
Sbjct: 1414457 cacccagtgggttgagattcttgtgaacgagatg 1414424
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>dbj|AP005744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1512_E04
          Length = 157848

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                         
Query: 505   acccacaggatataatgtggatcctgtgcatcaatctcccaatgaaatgtctactgaggt 564
             |||||||| || ||||||||||||| |  ||||||||||    | ||||||||||||| |
Sbjct: 33805 acccacagaatgtaatgtggatcctatttatcaatctccatcaggaatgtctactgagct 33746

                                 
Query: 565   tcaagtgcccaatgaaggta 584
             ||||||| |  |||||||||
Sbjct: 33745 tcaagtggctgatgaaggta 33726



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 444   tggaagaatgtgaaaatgatttggattcagcaatgaagt 482
             |||| ||||||||||| ||||| ||||||||||| ||||
Sbjct: 33866 tggaggaatgtgaaaacgattttgattcagcaataaagt 33828



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 303   cgtcctcaccgccctccaagcgcgcacgcttccg 336
             ||||||| |||||||||||||||||  |||||||
Sbjct: 35067 cgtcctccccgccctccaagcgcgcctgcttccg 35034



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 655   cacccaatgggttgagattcttatgaatgagatg 688
             |||||| ||||||||||||||| |||| ||||||
Sbjct: 32570 cacccagtgggttgagattcttgtgaacgagatg 32537
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>ref|XM_481521.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 369

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 431 attgaaaaggctctggaagaatgtgaaaatgatttggattcagcaat 477
           |||||||||||||||||  ||| || |||| || |||||||||||||
Sbjct: 214 attgaaaaggctctggacaaatctggaaataatgtggattcagcaat 260
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>gb|AY360386.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0017M13,
              complete sequence
          Length = 161902

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 431    attgaaaaggctctggaagaatgtgaaaatgatttggattcagcaat 477
              |||||||||||||||||  ||| || |||| || |||||||||||||
Sbjct: 114710 attgaaaaggctctggacaaatctggaaataatgtggattcagcaat 114664
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 431      attgaaaaggctctggaagaatgtgaaaatgatttggattcagcaat 477
                |||||||||||||||||  ||| || |||| || |||||||||||||
Sbjct: 13390237 attgaaaaggctctggacaaatctggaaataatgtggattcagcaat 13390191
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>dbj|AP005832.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1136D08
          Length = 176635

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 431    attgaaaaggctctggaagaatgtgaaaatgatttggattcagcaat 477
              |||||||||||||||||  ||| || |||| || |||||||||||||
Sbjct: 141706 attgaaaaggctctggacaaatctggaaataatgtggattcagcaat 141660
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>dbj|AP004228.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1120_B07
          Length = 118763

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 431   attgaaaaggctctggaagaatgtgaaaatgatttggattcagcaat 477
             |||||||||||||||||  ||| || |||| || |||||||||||||
Sbjct: 26964 attgaaaaggctctggacaaatctggaaataatgtggattcagcaat 26918
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>ref|XM_420930.1| PREDICTED: Gallus gallus similar to synaptotagmin XII (LOC422998),
           mRNA
          Length = 1841

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 256 gaagcgggcgtcctccttctcc 277
           ||||||||||||||||||||||
Sbjct: 578 gaagcgggcgtcctccttctcc 557
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>emb|BX247871.7| Zebrafish DNA sequence from clone CH211-190P8, complete sequence
          Length = 145789

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 448   agaatgtgaaaatgatttggat 469
             ||||||||||||||||||||||
Sbjct: 51857 agaatgtgaaaatgatttggat 51836
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>gb|DQ213756.1| Taeniopygia guttata clone 0062P0003B07 HIRA interacting protein
           3-like mRNA, complete sequence
          Length = 341

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 362 cgcggcgtcgtcgactccgac 382
           |||||||||||||||||||||
Sbjct: 194 cgcggcgtcgtcgactccgac 214
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>gb|DQ213755.1| Taeniopygia guttata clone 0064P0010B05 HIRA interacting protein
           3-like mRNA, complete sequence
          Length = 341

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 362 cgcggcgtcgtcgactccgac 382
           |||||||||||||||||||||
Sbjct: 194 cgcggcgtcgtcgactccgac 214
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>gb|AC164589.6| Mus musculus chromosome 8, clone RP24-363C11, complete sequence
          Length = 197883

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 130    ctcacgagggaggcagtggcggcgt 154
              |||||| ||||||||||||||||||
Sbjct: 163605 ctcacgcgggaggcagtggcggcgt 163581
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 345     gcggcagccccaggccgcgcg 365
               |||||||||||||||||||||
Sbjct: 1697984 gcggcagccccaggccgcgcg 1697964
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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 372   tcgactccgacctggtggccg 392
             |||||||||||||||||||||
Sbjct: 27204 tcgactccgacctggtggccg 27184
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>dbj|AK112845.1| Ciona intestinalis cDNA, clone:citb006o14, full insert sequence
          Length = 2698

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 455 gaaaatgatttggattcagca 475
           |||||||||||||||||||||
Sbjct: 832 gaaaatgatttggattcagca 852
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>emb|AL929382.9| Mouse DNA sequence from clone RP23-136C24 on chromosome X, complete
              sequence
          Length = 201060

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 625    tcttggtgcagagaaccttca 645
              |||||||||||||||||||||
Sbjct: 110746 tcttggtgcagagaaccttca 110726
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>gb|AC099723.16| Mus musculus chromosome 8, clone RP23-369P21, complete sequence
          Length = 184770

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 130    ctcacgagggaggcagtggcggcgt 154
              |||||| ||||||||||||||||||
Sbjct: 148068 ctcacgcgggaggcagtggcggcgt 148044
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>gb|BT017726.1| Zea mays clone EL01N0447F12.c mRNA sequence
          Length = 601

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 agggctgcggcctgcgcggc 225
           ||||||||||||||||||||
Sbjct: 439 agggctgcggcctgcgcggc 458
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>gb|BC053216.1| Danio rerio v-ral simian leukemia viral oncogene homolog A (ras
           related), mRNA (cDNA clone MGC:64038 IMAGE:6793405),
           complete cds
          Length = 1417

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ggcagtggcggcgtgggcaa 160
           ||||||||||||||||||||
Sbjct: 424 ggcagtggcggcgtgggcaa 443
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>gb|AC092494.2| Drosophila melanogaster clone BACR23I18, complete sequence
          Length = 172029

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  aaggagacgagaaggagcag 196
            ||||||||||||||||||||
Sbjct: 1894 aaggagacgagaaggagcag 1875
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>gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete sequence
          Length = 173988

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   aaggagacgagaaggagcag 196
             ||||||||||||||||||||
Sbjct: 42006 aaggagacgagaaggagcag 41987
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>ref|XM_415397.1| PREDICTED: Gallus gallus similar to LIM homeobox protein 6 isoform
           1; LIM homeodomain protein 6.1 (LOC417112), mRNA
          Length = 3841

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 agcgggcgtcctccttctcc 277
           ||||||||||||||||||||
Sbjct: 718 agcgggcgtcctccttctcc 699
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>gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0118N20, complete sequence
          Length = 146139

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gagggaggcagtggcggcgt 154
             ||||||||||||||||||||
Sbjct: 31923 gagggaggcagtggcggcgt 31904
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    cggcagccccaggccgcgcg 365
              ||||||||||||||||||||
Sbjct: 940691 cggcagccccaggccgcgcg 940672
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 446     gaagaatgtgaaaatgattt 465
               ||||||||||||||||||||
Sbjct: 1463435 gaagaatgtgaaaatgattt 1463416
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>gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0409G01,
              complete sequence
          Length = 143263

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gagggaggcagtggcggcgt 154
              ||||||||||||||||||||
Sbjct: 136910 gagggaggcagtggcggcgt 136891
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>emb|AJ250987.1|ZMA250987 Zea mays mRNA for OCL5 protein (ocl5 gene)
          Length = 3010

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  gcttccgcgcagacggcggc 349
            ||||||||||||||||||||
Sbjct: 2474 gcttccgcgcagacggcggc 2455
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>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   gcagcagctggagagggctg 212
             ||||||||||||||||||||
Sbjct: 70394 gcagcagctggagagggctg 70413
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>gb|AC183543.3| Pan troglodytes BAC clone CH251-299H22 from chromosome 11, complete
              sequence
          Length = 195721

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    gaaatgtctactgaggttca 567
              ||||||||||||||||||||
Sbjct: 133178 gaaatgtctactgaggttca 133197
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>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gcagcagctggagagggctg 212
             ||||||||||||||||||||
Sbjct: 46225 gcagcagctggagagggctg 46206
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>gb|AF181898.6| Homo sapiens chromosome 8 clone GS1-402E12 map p23, complete sequence
          Length = 261151

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    gcagcagctggagagggctg 212
              ||||||||||||||||||||
Sbjct: 214669 gcagcagctggagagggctg 214650
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 147   ggcggcgtgggcaaccgcggcaag 170
             ||||||||||||||| ||||||||
Sbjct: 46721 ggcggcgtgggcaacggcggcaag 46698
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>gb|BC034976.2| Homo sapiens solute carrier organic anion transporter family,
           member 6A1, mRNA (cDNA clone MGC:26949 IMAGE:4820512),
           complete cds
          Length = 2357

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 577 tgaaggtattgcagaatgta 596
           ||||||||||||||||||||
Sbjct: 786 tgaaggtattgcagaatgta 805
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   cgacctggtggccgtgatcc 398
             ||||||||||||||||||||
Sbjct: 44897 cgacctggtggccgtgatcc 44878
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>emb|BX005025.16| Zebrafish DNA sequence from clone DKEY-67K20 in linkage group 8, complete
              sequence
          Length = 196375

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    aagaatgtgaaaatgatttg 466
              ||||||||||||||||||||
Sbjct: 139478 aagaatgtgaaaatgatttg 139459
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>dbj|AK131445.1| Homo sapiens cDNA FLJ16580 fis, clone TESTI2050780
          Length = 1611

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 577 tgaaggtattgcagaatgta 596
           ||||||||||||||||||||
Sbjct: 681 tgaaggtattgcagaatgta 700
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>gb|AC141418.11| Pan troglodytes clone rp43-121l12, complete sequence
          Length = 164116

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   gcagcagctggagagggctg 212
             ||||||||||||||||||||
Sbjct: 82538 gcagcagctggagagggctg 82557
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 348     gcagccccaggccgcgcggc 367
               ||||||||||||||||||||
Sbjct: 3629526 gcagccccaggccgcgcggc 3629507
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 19      tcccagccttttcctccggc 38
               ||||||||||||||||||||
Sbjct: 1563727 tcccagccttttcctccggc 1563708
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>ref|NM_078705.2| Drosophila melanogaster penguin CG1685-RA (pen), mRNA
          Length = 2363

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  aaggagacgagaaggagcag 196
            ||||||||||||||||||||
Sbjct: 1878 aaggagacgagaaggagcag 1897
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>emb|BX005020.7| Zebrafish DNA sequence from clone DKEY-237D7 in linkage group 8,
             complete sequence
          Length = 202747

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   aagaatgtgaaaatgatttg 466
             ||||||||||||||||||||
Sbjct: 63194 aagaatgtgaaaatgatttg 63213
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>gb|U39205.1|SCU39205 Saccharomyces cerevisiae chromosome XVI, left arm, cosmid 8460
          Length = 37947

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 454  tgaaaatgatttggattcagcaat 477
            ||||||| ||||||||||||||||
Sbjct: 8541 tgaaaattatttggattcagcaat 8518
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 135      gagggaggcagtggcggcgt 154
                ||||||||||||||||||||
Sbjct: 13765851 gagggaggcagtggcggcgt 13765832
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 174      agtaaggagacgagaaggag 193
                ||||||||||||||||||||
Sbjct: 17225200 agtaaggagacgagaaggag 17225219
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>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence
          Length = 179941

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  cctccacctcacgagggagg 142
            ||||||||||||||||||||
Sbjct: 1442 cctccacctcacgagggagg 1461
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>ref|XM_220535.3| PREDICTED: Rattus norvegicus similar to Related RAS viral (r-ras)
           oncogene homolog 2 (LOC303202), mRNA
          Length = 2138

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ggcagtggcggcgtgggcaa 160
           ||||||||||||||||||||
Sbjct: 247 ggcagtggcggcgtgggcaa 266
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>dbj|AP004224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1111E11
          Length = 152835

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    agtaaggagacgagaaggag 193
              ||||||||||||||||||||
Sbjct: 138156 agtaaggagacgagaaggag 138175
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>emb|BX572082.4| Mouse DNA sequence from clone RP23-114B24 on chromosome X, complete
             sequence
          Length = 88681

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 657   cccaatgggttgagattctt 676
             ||||||||||||||||||||
Sbjct: 38039 cccaatgggttgagattctt 38058
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>ref|XM_314316.2| Anopheles gambiae str. PEST ENSANGP00000001178 (ENSANGG00000001011),
            partial mRNA
          Length = 4093

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 577  tgaaggtattgcagaatgta 596
            ||||||||||||||||||||
Sbjct: 3671 tgaaggtattgcagaatgta 3690
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>emb|AJ327595.1|HSA327595 Homo sapiens genomic sequence surrounding NotI site, clone
           NR1-EG17R
          Length = 702

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 348 gcagccccaggccgcgcggc 367
           ||||||||||||||||||||
Sbjct: 33  gcagccccaggccgcgcggc 14
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>ref|NM_201018.1| Danio rerio v-ral simian leukemia viral oncogene homolog A (ras
           related) (rala), mRNA
          Length = 1417

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ggcagtggcggcgtgggcaa 160
           ||||||||||||||||||||
Sbjct: 424 ggcagtggcggcgtgggcaa 443
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>gb|AY110048.1| Zea mays CL1207_1 mRNA sequence
          Length = 2985

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 330  gcttccgcgcagacggcggc 349
            ||||||||||||||||||||
Sbjct: 2474 gcttccgcgcagacggcggc 2455
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>gb|AF132165.1|AF132165 Drosophila melanogaster clone LD21304 unknown mRNA
          Length = 2368

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  aaggagacgagaaggagcag 196
            ||||||||||||||||||||
Sbjct: 1865 aaggagacgagaaggagcag 1884
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>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete
              sequence
          Length = 315815

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    aaggagacgagaaggagcag 196
              ||||||||||||||||||||
Sbjct: 141986 aaggagacgagaaggagcag 141967
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>dbj|AP002812.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-91P24, complete
             sequences
          Length = 169250

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   gaaatgtctactgaggttca 567
             ||||||||||||||||||||
Sbjct: 44277 gaaatgtctactgaggttca 44258
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>gb|AF017777.1|AF017777 Drosophila melanogaster tweety (tty), flightless (fli), dodo (dod),
             penguin (pen), small optic lobes (sol), innocent bystander
             (iby), waclaw (waw), bobby sox (bbx), sluggish (slg),
             helicase (hlc), misato (mst), and la costa (lcs) genes,
             complete cds
          Length = 66669

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   aaggagacgagaaggagcag 196
             ||||||||||||||||||||
Sbjct: 15945 aaggagacgagaaggagcag 15926
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>emb|AL928610.8| Zebrafish DNA sequence from clone CH211-245P6, complete sequence
          Length = 82988

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   taatgaagttcctgcacccg 614
             ||||||||||||||||||||
Sbjct: 26941 taatgaagttcctgcacccg 26922
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>dbj|AP002358.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1036E20, complete
              sequences
          Length = 190904

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 502    agaacccacaggatataatgtgga 525
              |||||||| |||||||||||||||
Sbjct: 171525 agaacccagaggatataatgtgga 171502


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,352,074
Number of Sequences: 3902068
Number of extensions: 5352074
Number of successful extensions: 107925
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107413
Number of HSP's gapped (non-prelim): 509
length of query: 688
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 665
effective length of database: 17,143,297,704
effective search space: 11400292973160
effective search space used: 11400292973160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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