ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd25o16 |
|---|---|
| Clone Library Name | barley_pub |
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 34.3 bits (77), Expect = 0.29 Identities = 31/121 (25%), Positives = 46/121 (38%) Frame = -2 Query: 377 SPSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTA 198 SPS ++ R R+ SS R H +P P PR + + +S + Sbjct: 211 SPSSPPRKRARSRSASQDSSARSSSSHASPR-----SPTPRTTSHVASYSSYSSRSRSRS 265 Query: 197 AVGVALAHSTTHTSMPRPERRQRLSARRPPPHNYGGIEKKIPLQEREHSPATTCGASASL 18 L+HS + S R R R +R P H+ + R SP + C +S S Sbjct: 266 RSRSPLSHSRSSRSRSRSRSRSRSRSRSPLSHSRSSRSRS---PSRSRSP-SRCASSRSR 321 Query: 17 S 15 S Sbjct: 322 S 322
>DOCK5_HUMAN (Q9H7D0) Dedicator of cytokinesis protein 5 (Fragment)| Length = 804 Score = 33.5 bits (75), Expect = 0.49 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Frame = -2 Query: 494 DEQMVEASTERNP*PRKRKPQSIKKNHQIIQTEEGIMYFSPSLQRQQPRR-----GRAHK 330 D + E ++E KRK S+ K+ I + SP+ + Q+P+ R Sbjct: 651 DLSLREENSENRISKFKRKDWSLSKSQVIAEKAPEPDLMSPTRKAQRPKSLQLMDNRLSP 710 Query: 329 HHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGV------------ 186 H S +P L P P A+R P+L+++ AA V Sbjct: 711 FHGS--------SPPQSTPLSPPPLTPKATRTLSSPSLQTDGIAATPVPPPPPPKSKPYE 762 Query: 185 ALAHSTTHTSMPRPERRQRLSARRPPP 105 ++T + P P RR+ + PPP Sbjct: 763 GSQRNSTELAPPLPVRREAKAPPPPPP 789
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 33.1 bits (74), Expect = 0.64 Identities = 36/103 (34%), Positives = 39/103 (37%), Gaps = 10/103 (9%) Frame = -2 Query: 383 YFSPSLQRQQPRRG----------RAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRD 234 Y S +LQR PRRG R H HH H HH R D G P A A Sbjct: 6 YNSSALQRP-PRRGDEGCEEDRDSRPHHHHR-----HHHHHHHHRRD-GDLPAGAVA--- 55 Query: 233 GGGPALKSEQTAAVGVALAHSTTHTSMPRPERRQRLSARRPPP 105 G A + A A HST P+PE RPPP Sbjct: 56 --GEAATASSNAGGANAHQHSTFSLRSPKPE-------YRPPP 89
>RNF38_MOUSE (Q8BI21) RING finger protein 38| Length = 518 Score = 32.7 bits (73), Expect = 0.84 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -2 Query: 443 RKPQSIKKNHQIIQTEE----GIMYFSPSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRA 276 R+P S++ N E SP ++RQ+ RR R +H+S + ++ HH P + Sbjct: 96 RQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRERLSRHNSISQDENYHHLPYAQQ 155 Query: 275 DLGPAPR 255 PR Sbjct: 156 QAIEEPR 162
>RNF38_HUMAN (Q9H0F5) RING finger protein 38| Length = 515 Score = 32.7 bits (73), Expect = 0.84 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -2 Query: 377 SPSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPR 255 SP ++RQ+ RR R +H+S + ++ HH P + PR Sbjct: 119 SPPVRRQRGRRDRLSRHNSISQDENYHHLPYAQQQAIEEPR 159
>SYH_MYCHJ (Q4AA96) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 32.7 bits (73), Expect = 0.84 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -2 Query: 416 HQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 315 H++ QTE+ YF P + + P++GR + + +G Sbjct: 95 HKLFQTEKKFFYFGPMFRYENPQKGRFRQFYQAG 128
>SYH_MYCH7 (Q4A8C3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 32.7 bits (73), Expect = 0.84 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -2 Query: 416 HQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 315 H++ QTE+ YF P + + P++GR + + +G Sbjct: 95 HKLFQTEKKFFYFGPMFRYENPQKGRFRQFYQAG 128
>SYH_MYCH2 (Q601R3) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 428 Score = 32.7 bits (73), Expect = 0.84 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -2 Query: 416 HQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 315 H++ QTE+ YF P + + P++GR + + +G Sbjct: 95 HKLFQTEKKFFYFGPMFRYENPQKGRFRQFYQAG 128
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 32.3 bits (72), Expect = 1.1 Identities = 32/97 (32%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Frame = -2 Query: 374 PSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRR----AAASRDGGGPALKSE 207 PS +R+Q R + H H HH P G P R +A R GP + Sbjct: 2200 PSREREQERGRPKDRKHRPHHHHHHHHHP------GRGPGRVSPGVSARRRRRGPVARVR 2253 Query: 206 QTAAVGVALAHSTTHTSMPR---PERRQRLSARRPPP 105 A ALAH+ P PE R R ARRP P Sbjct: 2254 PARA--PALAHARARARAPARLLPELRLR-RARRPRP 2287
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 32.3 bits (72), Expect = 1.1 Identities = 37/153 (24%), Positives = 56/153 (36%), Gaps = 4/153 (2%) Frame = -2 Query: 494 DEQMVEASTERNP*PRKRKPQSIKKNHQIIQTEEGIMYFSPSLQRQQPRRGRAHKHHSSG 315 DE + ER P P R P + + + SP R R + H H S Sbjct: 31 DEDGSRSPGERTPSPPSRDPSPYRSPGERTPSP------SPRRDRSLSPRDQPHSHPRSR 84 Query: 314 RGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRPERR 135 +P R+ P+PR+ G PA + +++ S+ P P R Sbjct: 85 SPTPRSQSPSRRSVRSPSPRQ-------GSPARRVDRS---------SSPRARSPPPRRH 128 Query: 134 QR---LSARRPPP-HNYGGIEKKIPLQEREHSP 48 R L + PPP H G + + +ER +P Sbjct: 129 SRSPPLRGQPPPPRHRDAGGDYRPVRKERTPTP 161
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/66 (31%), Positives = 30/66 (45%) Frame = -1 Query: 225 PRAQVRANGRSRRCPGAQHHAHLDATTRTTAAPFGAATSSSQLRRHRKKNPLTGKGAQPG 46 P+ + A GR+ G QH +P G RRHR++N L GA PG Sbjct: 39 PQVRGAAPGRANVARGCQHRHPGPQRADHPGSPVGG-------RRHRRRN-LAHPGADPG 90 Query: 45 DDVRRI 28 ++RR+ Sbjct: 91 RELRRV 96
>PTC1_HUMAN (Q13635) Protein patched homolog 1 (PTC1) (PTC)| Length = 1447 Score = 32.0 bits (71), Expect = 1.4 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 16/127 (12%) Frame = -2 Query: 335 HKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAHSTT--- 165 H H S D + + + L R A + GGPA + A AHST Sbjct: 1213 HTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATENPVFAHSTVVHP 1272 Query: 164 ---HTSMPRPERRQRLSARRPPPHNYGGIEKKIPLQE----------REHSPATTCGASA 24 H P ++ L + PP G ++ P +E R+ +T G S Sbjct: 1273 ESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPLYRPRRDAFEISTEGHSG 1332 Query: 23 SLSRQQW 3 +R +W Sbjct: 1333 PSNRARW 1339
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = -2 Query: 365 QRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQ 204 +++ RRG H HH GR H HH R DLG + S P+ +S + Sbjct: 520 RQRHRRRGSHHHHHHPGR--HGHH----RCDLGSGSDSGSCSSSPSSPSSESSE 567
>GSH2_MOUSE (P31316) Homeobox protein GSH-2| Length = 305 Score = 31.2 bits (69), Expect = 2.4 Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Frame = -2 Query: 380 FSPSLQRQQ--PRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSE 207 FSP+ Q PR AH HH + H HH P A AAA+ Sbjct: 109 FSPAPGDAQFCPRVSHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAAA----------- 157 Query: 206 QTAAVGVALAHSTTH 162 AA AL H H Sbjct: 158 --AAAAAALGHPQHH 170
>FTSK_YERPE (Q8ZGC7) DNA translocase ftsK| Length = 1305 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -3 Query: 253 EQPHHAMEVAPRSSPSKRPQSAL-PWRTAPRTPRCHDPNDGSAFRR 119 E P ++ + ++P++RP+ L W +P TP H P D SA +R Sbjct: 358 ELPEESLPIQTHAAPTERPEPKLGAWDMSP-TPVSHSPFDFSAIQR 402
>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1407 Score = 30.8 bits (68), Expect = 3.2 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 4/98 (4%) Frame = -2 Query: 323 SSGRGDHIHHTPLLRADLGPAPRRAAAS-RDGGGPALKSEQTAAVGVALAHSTTHTSM-- 153 +S DH+ TP D P+P AS R G G + + T A +ALA S T T + Sbjct: 50 ASATSDHVRSTP---TDKRPSPADVPASHRSGHGRSSSTIDTLAT-IALATSPTFTPLTH 105 Query: 152 -PRPERRQRLSARRPPPHNYGGIEKKIPLQEREHSPAT 42 P ++ + PP K P ER+ S T Sbjct: 106 RPPSDKSNTTLSMFPPETEPVERPAKRPRSERDESSYT 143
>ABL1_HUMAN (P00519) Proto-oncogene tyrosine-protein kinase ABL1 (EC 2.7.10.2)| (p150) (c-ABL) (Abelson murine leukemia viral oncogene homolog 1) Length = 1130 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/65 (33%), Positives = 27/65 (41%) Frame = -2 Query: 347 RGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAHST 168 R R HKH S G L+ P P A+A + GG P+ Q AA L T Sbjct: 874 RVRRHKHSSESPGRDKGKLSRLK-PAPPPPPAASAGKAGGKPSQSPSQEAAGEAVLGAKT 932 Query: 167 THTSM 153 TS+ Sbjct: 933 KATSL 937
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/55 (29%), Positives = 24/55 (43%) Frame = -2 Query: 308 DHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRP 144 +++ + P A L P P A + G A E GV ++H T T P+P Sbjct: 3892 NNLSNPPTPPASLPPTPPPMACQKMANGFATTEELAGKAGVLVSHEVTKTLGPKP 3946
>H15_DROME (Q94890) T-box protein H15| Length = 660 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%) Frame = -2 Query: 404 QTEEGIMYFSPSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGG 225 Q + + Q+QQ +R + H H ++G+ HH ++ + ++ + Sbjct: 159 QARQALRVAQQQQQQQQQQRQQTHHHATTGKQQRQHHNH-HSSNTNNSSNSGNSNTNSKS 217 Query: 224 PALKSEQTAAVGVALAHSTTHTSMPR-PERRQRLSARRPP 108 + + AAVG A S + PE +RLS P Sbjct: 218 SSQRGRSAAAVGAAATPSPPPPPPSQSPEELERLSPEESP 257
>RAD5_CRYNE (Q5KPG8) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1198 Score = 30.4 bits (67), Expect = 4.2 Identities = 33/127 (25%), Positives = 47/127 (37%), Gaps = 14/127 (11%) Frame = -2 Query: 416 HQIIQTEEGIMYFSPSLQRQQ-----PRRGR----AHKHHSSGRGDHIHHTPLLRAD--- 273 H + + I+ +P+ Q PRR R AH HHSS + P++RAD Sbjct: 78 HDNVDDDFSIVGHNPASSHPQGTIVAPRRKRSLQQAHSHHSSSSSSPVPSAPVIRADFRK 137 Query: 272 --LGPAPRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRPERRQRLSARRPPPHN 99 LG + G G S T V +T P+P R+ R Sbjct: 138 GFLGEFVCEGWSLSKGRGYC--SPGTKIVIERPKSKSTDVGAPKPGRKDSGPVRLVNGKV 195 Query: 98 YGGIEKK 78 GG++ K Sbjct: 196 VGGVKSK 202
>GCSP_PEA (P26969) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1057 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -1 Query: 153 ATTRTTAAPFGAATSSSQLRRHRKKNPLTGKGAQPGDDVRR 31 +TT TT PF + SSS+ + L G+G++P ++V R Sbjct: 30 STTTTTPLPFSLSGSSSRYVSSVSNSILRGRGSKPDNNVSR 70
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 30.0 bits (66), Expect = 5.4 Identities = 32/135 (23%), Positives = 47/135 (34%), Gaps = 28/135 (20%) Frame = -2 Query: 335 HKHHSSGRGDHIHHTPLLRADLGPAPRRAA----ASRDGGGPALKSE-----------QT 201 H HH+ G G H HH +L A AA AS GG S Sbjct: 135 HAHHAHG-GHHSHHGHVLHHQQAAAAAAAAPSAPASHLGGSSTAASSIHGHAHAHHVHMA 193 Query: 200 AAVGVALA-------------HSTTHTSMPRPERRQRLSARRPPPHNYGGIEKKIPLQER 60 AA ++A H H P + + + R PP ++GG Sbjct: 194 AAAAASVAQHQHQSHPHSHHHHHQNHHQHPHQQPATQTALRSPPHSDHGGSVGPATSSSG 253 Query: 59 EHSPATTCGASASLS 15 +P+++ A+A+ S Sbjct: 254 GGAPSSSNAAAATSS 268
>SOX18_HUMAN (P35713) Transcription factor SOX-18| Length = 384 Score = 30.0 bits (66), Expect = 5.4 Identities = 22/58 (37%), Positives = 23/58 (39%) Frame = -2 Query: 266 PAPRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRPERRQRLSARRPPPHNYG 93 P RR A G G A + AA ALA S P P QR R P P YG Sbjct: 14 PPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSP---QRSPPRSPEPGRYG 68
>POLS_SINDO (P27285) Structural polyprotein (p130) [Contains: Capsid protein| (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3 protein (Spike glycoprotein E3); E2 envelope glycoprotein (Spike glycoprotein E2); 6K protein; E1 envelope glycoprotein (Spike g Length = 1245 Score = 30.0 bits (66), Expect = 5.4 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Frame = -2 Query: 266 PAPRRAAA---SRDGGGPALKSEQTAAVGVALAHSTT-HTSMPRPERRQRLSARRPPPHN 99 P RR AA +R+G ++ TA + + +T PRP RQ+ A + PP Sbjct: 23 PRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKP 82 Query: 98 YGGIEKKIPLQEREHSPATT 39 +K P ++++ PA T Sbjct: 83 ----KKPKPQEKKKKQPAKT 98
>TEF_CHICK (Q92172) Transcription factor VBP (Vitellogenin gene-binding| protein) (Thyrotroph embryonic factor homolog) Length = 319 Score = 29.6 bits (65), Expect = 7.1 Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Frame = -2 Query: 260 PRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRPERRQRLSA---------RRPP 108 P RAA +E TAA G A A + +PE++ A PP Sbjct: 2 PGRAAHQEAAAAGGAAAEPTAAGGSAGAVAQ------QPEQQGLAGAFPLVLKKLMENPP 55 Query: 107 PHNYGGIEKKIPLQEREHSPATTCGASASLSRQQW 3 EKKI L+E E + A+T SASL W Sbjct: 56 RDARLDKEKKIKLEEDEAAAASTMAVSASLMPPIW 90
>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2| Length = 304 Score = 29.6 bits (65), Expect = 7.1 Identities = 20/64 (31%), Positives = 21/64 (32%) Frame = -2 Query: 353 PRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAH 174 PR AH HH + H HH P A AAA AA AL H Sbjct: 120 PRVNHAHHHHHPPQHHHHHHQPQQPGSAAAAAAAAAA--------------AAAAAALGH 165 Query: 173 STTH 162 H Sbjct: 166 PQHH 169
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 29.6 bits (65), Expect = 7.1 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 5/63 (7%) Frame = -2 Query: 332 KHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVG-----VALAHST 168 KH SS G+ HH P+ G A R GGP A G L H Sbjct: 137 KHRSSHSGEKPHHCPVCGKAFGHGSLLAQHLRTHGGPRPHKCPVCAKGFGQGSALLKHLR 196 Query: 167 THT 159 THT Sbjct: 197 THT 199
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 29.6 bits (65), Expect = 7.1 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 16/130 (12%) Frame = -2 Query: 347 RGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAAASRDG-----GGPALKSEQTA----- 198 RGR H S G +P R GP R + S G GG L+ ++ Sbjct: 423 RGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSS 482 Query: 197 -----AVGVALAHSTTHTSMPRPER-RQRLSARRPPPHNYGGIEKKIPLQEREHSPATTC 36 + +L S +H+ P R R R ++ P P P +E+ PA + Sbjct: 483 WSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPS---------PAREKLTRPAASP 533 Query: 35 GASASLSRQQ 6 L + + Sbjct: 534 AVGEKLKKTE 543
>RS15_METMA (Q8PVA5) 30S ribosomal protein S15P/S13e| Length = 152 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -3 Query: 493 MNRWLKHQPKEIHDQGRENLNQS--RRIIKSYKQKKV 389 + + L K++H++ NL +S RR++K YKQ+KV Sbjct: 98 LRKHLSTNKKDVHNKRALNLTESKIRRLVKYYKQEKV 134
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 29.3 bits (64), Expect = 9.3 Identities = 35/127 (27%), Positives = 46/127 (36%), Gaps = 8/127 (6%) Frame = -2 Query: 374 PSLQRQQPRRGRAHKHHSSGRGDHIHHTPLLRADLGPAPRRAA-ASRDGGGPALKSEQTA 198 P + Q R GR + GRG P L RRA +R+ GGP + T Sbjct: 130 PPTKAQPARGGRRGRRRGRGRGG-----PGAADGLSDPRRRAPRTNRNPGGPRPGAGWTD 184 Query: 197 AVGVALAHSTTHTSMPRPERRQRLSARR--PPPHNYGGI-----EKKIPLQEREHSPATT 39 G + + P P QR R PPP I + + P ER+ A T Sbjct: 185 GPGAPHGEAWRGSEQPDPPGGQRTRGVRQAPPPLMTLAIAPPPADPRAPAPERKAPAADT 244 Query: 38 CGASASL 18 A+ L Sbjct: 245 IDATTRL 251
>CH18_DROSU (P24514) Chorion protein S18| Length = 174 Score = 29.3 bits (64), Expect = 9.3 Identities = 25/88 (28%), Positives = 40/88 (45%) Frame = -2 Query: 278 ADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRPERRQRLSARRPPPHN 99 AD+G + SR GG P + E A +ALA + + E +R+ P N Sbjct: 77 ADIGNQYGPVSGSRYGGAPPVDREAIALAKLALAAPSAGGPLVWREAPRRVQ-HAYGPSN 135 Query: 98 YGGIEKKIPLQEREHSPATTCGASASLS 15 YG +++ E E A+ AS+S++ Sbjct: 136 YGAPQQRYARAE-EAQGASAAAASSSVA 162
>PUM_DROME (P25822) Maternal protein pumilio| Length = 1533 Score = 29.3 bits (64), Expect = 9.3 Identities = 19/77 (24%), Positives = 33/77 (42%) Frame = -2 Query: 320 SGRGDHIHHTPLLRADLGPAPRRAAASRDGGGPALKSEQTAAVGVALAHSTTHTSMPRPE 141 SG +HH + A A + AA+ + S+ AAV H H P+ + Sbjct: 169 SGTNGGLHHQSMAAAAANMAAMQQAAALAKHNHMI-SQAAAAVAAQQQHQHPHQQHPQQQ 227 Query: 140 RRQRLSARRPPPHNYGG 90 ++Q+ + + PH+ G Sbjct: 228 QQQQQAQNQGHPHHLMG 244
>RS15_METAC (Q8TS56) 30S ribosomal protein S15P/S13e| Length = 152 Score = 29.3 bits (64), Expect = 9.3 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Frame = -3 Query: 493 MNRWLKHQPKEIHDQGRENLNQS--RRIIKSYKQKKV 389 + + L K++H++ NL +S RR++K YKQ+KV Sbjct: 98 LRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKV 134
>NPAS2_HUMAN (Q99743) Neuronal PAS domain protein 2 (Neuronal PAS2) (Member of| PAS protein 4) (MOP4) Length = 824 Score = 29.3 bits (64), Expect = 9.3 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 188 VALAHSTTHTSMPRPERRQRLSARRPPP---HNYGGIEKKIPLQEREHSPATTCGAS 27 + HS + R ERRQ L+ PP H+ +K L+ R+H A GAS Sbjct: 344 IVCTHSVVSYADVRVERRQELALEDPPSEALHSSALKDKGSSLEPRQHFNALDVGAS 400 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,600,631 Number of Sequences: 219361 Number of extensions: 1646616 Number of successful extensions: 6759 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 6274 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6722 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
