ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25o16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I... 46 0.13
2gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, c... 44 0.53
3gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, comple... 44 0.53
4gb|AE012184.1| Xanthomonas campestris pv. campestris str. ATCC 3... 44 0.53
5gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 44 0.53
6gb|AC165226.3| Sorex araneus, clone XX-26483857F19, complete seq... 42 2.1
7gb|U97004.2| Caenorhabditis elegans cosmid R08E5, complete sequence 42 2.1
8gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome... 42 2.1
9gb|AC011248.8| Homo sapiens 12 BAC RP11-14P21 (Roswell Park Canc... 42 2.1
10gb|AY281354.1| Uncultured Acidobacteria bacterium clone 38c7 gen... 42 2.1
11emb|AL360231.16| Human DNA sequence from clone RP11-110H10 on ch... 42 2.1
12gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, com... 42 2.1
13gb|AC108930.3| Homo sapiens BAC clone RP11-204C12 from 4, comple... 42 2.1
14ref|NM_071644.2| Caenorhabditis elegans R08E5.3 (R08E5.3) mRNA, ... 42 2.1
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A... 42 2.1
17gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromos... 42 2.1
18gb|AC145873.3| Pan troglodytes BAC clone RP43-20K16 from chromos... 42 2.1
19dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
20emb|BX005052.6| Zebrafish DNA sequence from clone CH211-42O7 in ... 42 2.1
21gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P... 42 2.1
22gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 8.2
23ref|XM_479616.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
24ref|NM_001004362.1| Mus musculus RIKEN cDNA 2610008E11 gene (261... 40 8.2
25gb|BC082302.1| Mus musculus RIKEN cDNA 2610008E11 gene, mRNA (cD... 40 8.2
26gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
27gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosom... 40 8.2
28emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 ... 40 8.2
29gb|AC124394.4| Mus musculus BAC clone RP24-335M3 from chromosome... 40 8.2
30emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 i... 40 8.2
31gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosom... 40 8.2
32gb|AC127431.1| Mus musculus BAC clone RP24-481H21 from 7, comple... 40 8.2
33gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, comp... 40 8.2
34ref|XM_724400.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.2
35gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosom... 40 8.2
36gb|AC135329.12| Homo sapiens chromosome 15, clone RP11-1365A12, ... 40 8.2
37gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, comp... 40 8.2
38gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytans... 40 8.2
39dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 8.2
40gb|AF154043.2| Streptococcus pneumoniae strain srf15 surface pro... 40 8.2
41gb|AF154034.1| Streptococcus pneumoniae strain g54 surface prote... 40 8.2
42gb|AF154019.1| Streptococcus pneumoniae strain g385 surface prot... 40 8.2
43dbj|AK148309.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 40 8.2
44gb|AC080172.5| Homo sapiens chromosome 11, clone CTC-790M5, comp... 40 8.2
45gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, comple... 40 8.2
46gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosom... 40 8.2
47dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
48dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
49emb|BX813381.1|CNS0ADZJ Arabidopsis thaliana Full-length cDNA Co... 40 8.2
50gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosom... 40 8.2
51ref|NM_174447.2| Bos taurus RAB3B, member RAS oncogene family (R... 40 8.2
52gb|AC114772.5| Homo sapiens BAC clone RP11-427H3 from 2, complet... 40 8.2
53dbj|AB183695.1| Symplocarpus foetidus SfAOX mRNA for skunk cabba... 40 8.2
54gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc... 40 8.2
55gb|AF225404.1|AF225400S05 Homo sapiens HERC2 (HERC2) gene, exon ... 40 8.2
56gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.2
57dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.2
58dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
59gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, co... 40 8.2
60dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
61gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis tha... 40 8.2
62emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in ... 40 8.2
63emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chr... 40 8.2
64dbj|AK108769.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
65dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
66gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, co... 40 8.2
67dbj|AP002444.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.2
68gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 8.2
69dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.2
70gb|M19886.1|BOVBPGTPB Bovine GTP-binding protein (smg p25B) mRNA... 40 8.2
71gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 8.2
72emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on ch... 40 8.2 
>emb|AL078591.18|HSDJ198I9 Human DNA sequence from clone RP1-198I9 on chromosome 6q12-13 Contains
             the 3' end of a novel gene (KIAA1411, FLJ20176, FLJ11049),
             complete sequence
          Length = 144649

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 551   aacaaaaattaaacaaaattagt 573
             |||||||||||||||||||||||
Sbjct: 78265 aacaaaaattaaacaaaattagt 78243
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>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence
          Length = 212273

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 519    agaaaagcagttaatctccaga 540
              ||||||||||||||||||||||
Sbjct: 157648 agaaaagcagttaatctccaga 157627
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>gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, complete sequence
          Length = 211397

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 519    agaaaagcagttaatctccaga 540
              ||||||||||||||||||||||
Sbjct: 211179 agaaaagcagttaatctccaga 211200
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>gb|AE012184.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 92 of
            460 of the complete genome
          Length = 10695

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 20   gagacgctgatgcgccgcacgtcgtcgccg 49
            |||||||||||||||||||| ||| |||||
Sbjct: 9466 gagacgctgatgcgccgcacatcgccgccg 9495
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 20      gagacgctgatgcgccgcacgtcgtcgccg 49
               |||||||||||||||||||| ||| |||||
Sbjct: 4027943 gagacgctgatgcgccgcacatcgccgccg 4027914
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>gb|AC165226.3| Sorex araneus, clone XX-26483857F19, complete sequence
          Length = 39750

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 551   aacaaaaattaaacaaaatta 571
             |||||||||||||||||||||
Sbjct: 16656 aacaaaaattaaacaaaatta 16636
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>gb|U97004.2| Caenorhabditis elegans cosmid R08E5, complete sequence
          Length = 8163

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 551  aacaaaaattaaacaaaatta 571
            |||||||||||||||||||||
Sbjct: 5633 aacaaaaattaaacaaaatta 5613
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>gb|AC122244.5| Mus musculus BAC clone RP23-149I9 from chromosome 10, complete sequence
          Length = 187474

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 427   attgattgaggttttctcttc 447
             |||||||||||||||||||||
Sbjct: 95892 attgattgaggttttctcttc 95872
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>gb|AC011248.8| Homo sapiens 12 BAC RP11-14P21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 111312

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 552   acaaaaattaaacaaaattag 572
             |||||||||||||||||||||
Sbjct: 69261 acaaaaattaaacaaaattag 69281
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>gb|AY281354.1| Uncultured Acidobacteria bacterium clone 38c7 genomic sequence
          Length = 39263

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    gatgcgccgcacgtcgtcgcc 48
             |||||||||||||||||||||
Sbjct: 31763 gatgcgccgcacgtcgtcgcc 31743
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>emb|AL360231.16| Human DNA sequence from clone RP11-110H10 on chromosome 10 Contains the
              5' end of the CACNB2 gene for calcium channel
              voltage-dependent beta 2 subunit, the 3' end of a novel
              gene (FLJ30499), the 5' end of a novel gene (FLJ30450) and
              CpG island, complete sequence
          Length = 154244

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 508    atattatgtgcagaaaagcag 528
              |||||||||||||||||||||
Sbjct: 130006 atattatgtgcagaaaagcag 130026
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>gb|AC016587.9| Homo sapiens chromosome 19 clone CTD-2632B17, complete sequence
          Length = 155221

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 552   acaaaaattaaacaaaattag 572
             |||||||||||||||||||||
Sbjct: 67773 acaaaaattaaacaaaattag 67793
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>gb|AC108930.3| Homo sapiens BAC clone RP11-204C12 from 4, complete sequence
          Length = 72790

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 557   aattaaacaaaattagtgttt 577
             |||||||||||||||||||||
Sbjct: 32068 aattaaacaaaattagtgttt 32088
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>ref|NM_071644.2| Caenorhabditis elegans R08E5.3 (R08E5.3) mRNA, complete cds
          Length = 1472

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 551  aacaaaaattaaacaaaatta 571
            |||||||||||||||||||||
Sbjct: 1276 aacaaaaattaaacaaaatta 1256
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 100      ttgtgaggaggaggtcgccgc 120
                |||||||||||||||||||||
Sbjct: 19094155 ttgtgaggaggaggtcgccgc 19094175



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 411      ttgatgattcttcttgattg 430
                ||||||||||||||||||||
Sbjct: 29416973 ttgatgattcttcttgattg 29416954
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>gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A19, complete sequence
          Length = 219428

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 553   caaaaattaaacaaaattagt 573
             |||||||||||||||||||||
Sbjct: 10220 caaaaattaaacaaaattagt 10200
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>gb|AC147282.3| Pan troglodytes BAC clone RP43-86L11 from chromosome 7, complete sequence
          Length = 223086

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 553    caaaaattaaacaaaattagt 573
              |||||||||||||||||||||
Sbjct: 126788 caaaaattaaacaaaattagt 126768
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>gb|AC145873.3| Pan troglodytes BAC clone RP43-20K16 from chromosome 7, complete sequence
          Length = 149916

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 553    caaaaattaaacaaaattagt 573
              |||||||||||||||||||||
Sbjct: 109934 caaaaattaaacaaaattagt 109954
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>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0062D12
          Length = 155408

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   ttgtgaggaggaggtcgccgc 120
             |||||||||||||||||||||
Sbjct: 17550 ttgtgaggaggaggtcgccgc 17570
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>emb|BX005052.6| Zebrafish DNA sequence from clone CH211-42O7 in linkage group 15,
             complete sequence
          Length = 177681

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 548   aagaacaaaaattaaacaaaa 568
             |||||||||||||||||||||
Sbjct: 21923 aagaacaaaaattaaacaaaa 21903
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>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete
             sequence
          Length = 85372

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 551   aacaaaaattaaacaaaatta 571
             |||||||||||||||||||||
Sbjct: 40755 aacaaaaattaaacaaaatta 40775
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 334     tgcgcgcgtcctcgacgaggttgc 357
               ||||||||| ||||||||||||||
Sbjct: 2304541 tgcgcgcgttctcgacgaggttgc 2304518
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>ref|XM_479616.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2019

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 ttgatgattcttcttgattg 430
           ||||||||||||||||||||
Sbjct: 408 ttgatgattcttcttgattg 389
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>ref|NM_001004362.1| Mus musculus RIKEN cDNA 2610008E11 gene (2610008E11Rik), mRNA
          Length = 4202

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 tgcttcaaccatctgttcat 493
           ||||||||||||||||||||
Sbjct: 511 tgcttcaaccatctgttcat 492
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>gb|BC082302.1| Mus musculus RIKEN cDNA 2610008E11 gene, mRNA (cDNA clone MGC:90797
           IMAGE:6838422), complete cds
          Length = 4202

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 tgcttcaaccatctgttcat 493
           ||||||||||||||||||||
Sbjct: 511 tgcttcaaccatctgttcat 492
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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    gccgcacgtcgtcgccgggc 52
             ||||||||||||||||||||
Sbjct: 98835 gccgcacgtcgtcgccgggc 98854
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>gb|AC115360.6| Mus musculus BAC clone RP23-191N22 from chromosome 19, complete sequence
          Length = 217325

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 551    aacaaaaattaaacaaaatt 570
              ||||||||||||||||||||
Sbjct: 210125 aacaaaaattaaacaaaatt 210144
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>emb|CR628410.11| Zebrafish DNA sequence from clone CH211-198D23 in linkage group 23,
              complete sequence
          Length = 172610

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    gtccgctcggaggagcggcg 292
              ||||||||||||||||||||
Sbjct: 145438 gtccgctcggaggagcggcg 145457
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>gb|AC124394.4| Mus musculus BAC clone RP24-335M3 from chromosome 19, complete sequence
          Length = 171122

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   aggtgtgcgtggtgctgtgc 177
             ||||||||||||||||||||
Sbjct: 46419 aggtgtgcgtggtgctgtgc 46400
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>emb|CR376849.29| Zebrafish DNA sequence from clone CH211-145A9 in linkage group 11,
              complete sequence
          Length = 147098

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    ttttctcttccttggtcatg 457
              ||||||||||||||||||||
Sbjct: 139965 ttttctcttccttggtcatg 139946
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>gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosome 18, complete
             sequence
          Length = 142347

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 507   catattatgtgcagaaaagc 526
             ||||||||||||||||||||
Sbjct: 69074 catattatgtgcagaaaagc 69093
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>gb|AC127431.1| Mus musculus BAC clone RP24-481H21 from 7, complete sequence
          Length = 166978

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   aagaacaaaaattaaacaaaatta 571
             |||||||||| |||||||||||||
Sbjct: 41731 aagaacaaaagttaaacaaaatta 41708
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>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence
          Length = 237590

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 554    aaaaattaaacaaaattagt 573
              ||||||||||||||||||||
Sbjct: 151532 aaaaattaaacaaaattagt 151513
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>ref|XM_724400.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01698)
           partial mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 552 acaaaaattaaacaaaatta 571
           ||||||||||||||||||||
Sbjct: 696 acaaaaattaaacaaaatta 715
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>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence
          Length = 242297

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 548   aagaacaaaaattaaacaaaatta 571
             |||||||||| |||||||||||||
Sbjct: 10072 aagaacaaaagttaaacaaaatta 10095
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>gb|AC135329.12| Homo sapiens chromosome 15, clone RP11-1365A12, complete sequence
          Length = 188766

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   atgattcttcttgattgatt 433
             ||||||||||||||||||||
Sbjct: 43150 atgattcttcttgattgatt 43169
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>gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, complete sequence
          Length = 184569

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 553   caaaaattaaacaaaattagtgtt 576
             ||||||||||| ||||||||||||
Sbjct: 57609 caaaaattaaaaaaaattagtgtt 57632
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>gb|AF453501.1| Actinosynnema pretiosum subsp. auranticum maytansinoid antitumor agent
             ansamitocin biosynthetic gene cluster I, partial sequence
          Length = 82746

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gcgaggagccgggccgaggt 274
             ||||||||||||||||||||
Sbjct: 41865 gcgaggagccgggccgaggt 41884
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 472     gatgcttcaaccatctgttc 491
               ||||||||||||||||||||
Sbjct: 2606048 gatgcttcaaccatctgttc 2606029
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>gb|AF154043.2| Streptococcus pneumoniae strain srf15 surface protein PspC (pspC)
            gene, pspC-7.4 allele, complete cds
          Length = 6097

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 408  gatttgatgattcttcttga 427
            ||||||||||||||||||||
Sbjct: 4031 gatttgatgattcttcttga 4050
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>gb|AF154034.1| Streptococcus pneumoniae strain g54 surface protein PspC (pspC) gene,
            pspC-7.1 allele, complete cds; and IS3-Spn1 putative
            transposase and hypothetical protein genes, complete cds
          Length = 6108

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 408  gatttgatgattcttcttga 427
            ||||||||||||||||||||
Sbjct: 4031 gatttgatgattcttcttga 4050
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>gb|AF154019.1| Streptococcus pneumoniae strain g385 surface protein PspC (pspC)
            gene, pspC-7.3 allele, complete cds
          Length = 6099

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 408  gatttgatgattcttcttga 427
            ||||||||||||||||||||
Sbjct: 4033 gatttgatgattcttcttga 4052
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>dbj|AK148309.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
           library, clone:G370085O05 product:hypothetical
           Zn-finger, C2H2 type/KRAB box containing protein, full
           insert sequence
          Length = 1186

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 tgcttcaaccatctgttcat 493
           ||||||||||||||||||||
Sbjct: 555 tgcttcaaccatctgttcat 536
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>gb|AC080172.5| Homo sapiens chromosome 11, clone CTC-790M5, complete sequence
          Length = 152435

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   tatgatttgatgattcttct 424
             ||||||||||||||||||||
Sbjct: 72473 tatgatttgatgattcttct 72492
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>gb|AC073648.7| Homo sapiens BAC clone RP11-747H12 from 4, complete sequence
          Length = 180659

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   aagaacaaaaattaaacaaaatta 571
             ||||| ||||||||||||||||||
Sbjct: 10041 aagaaaaaaaattaaacaaaatta 10018
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>gb|AC161814.2| Mus musculus BAC clone RP24-120E13 from chromosome 17, complete sequence
          Length = 196752

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    ttttctcttccttggtcatg 457
              ||||||||||||||||||||
Sbjct: 131041 ttttctcttccttggtcatg 131022
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 281     ggaggagcggcgtgtggtgg 300
               ||||||||||||||||||||
Sbjct: 6700078 ggaggagcggcgtgtggtgg 6700059
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 33       gccgcacgtcgtcgccgggc 52
                ||||||||||||||||||||
Sbjct: 28944542 gccgcacgtcgtcgccgggc 28944561
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>emb|BX813381.1|CNS0ADZJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZH10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 2591

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 551 aacaaaaattaaacaaaatt 570
           ||||||||||||||||||||
Sbjct: 955 aacaaaaattaaacaaaatt 936
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>gb|AC154553.3| Mus musculus BAC clone RP23-416K11 from chromosome 17, complete sequence
          Length = 186842

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    ttttctcttccttggtcatg 457
              ||||||||||||||||||||
Sbjct: 132994 ttttctcttccttggtcatg 133013
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>ref|NM_174447.2| Bos taurus RAB3B, member RAS oncogene family (RAB3B), mRNA
          Length = 735

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 gctgctctgcgaggagccgg 266
           ||||||||||||||||||||
Sbjct: 512 gctgctctgcgaggagccgg 493
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>gb|AC114772.5| Homo sapiens BAC clone RP11-427H3 from 2, complete sequence
          Length = 163318

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 549   agaacaaaaattaaacaaaa 568
             ||||||||||||||||||||
Sbjct: 86818 agaacaaaaattaaacaaaa 86799
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>dbj|AB183695.1| Symplocarpus foetidus SfAOX mRNA for skunk cabbage alternative
           oxidase, complete cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 ggaggtcgccgcgccgaaag 128
           ||||||||||||||||||||
Sbjct: 351 ggaggtcgccgcgccgaaag 370
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>gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150222

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    ctgtgctccctttcctgtaagggg 75
             |||||||||| |||||||||||||
Sbjct: 94756 ctgtgctccccttcctgtaagggg 94733
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>gb|AF225404.1|AF225400S05 Homo sapiens HERC2 (HERC2) gene, exon 80 and partial cds
          Length = 199

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 414 atgattcttcttgattgatt 433
           ||||||||||||||||||||
Sbjct: 50  atgattcttcttgattgatt 69
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>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 408     gatttgatgattcttcttga 427
               ||||||||||||||||||||
Sbjct: 1035143 gatttgatgattcttcttga 1035162
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 35      cgcacgtcgtcgccgggctg 54
               ||||||||||||||||||||
Sbjct: 3688898 cgcacgtcgtcgccgggctg 3688917
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>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0425F05
          Length = 162858

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    ggaggagcggcgtgtggtgg 300
              ||||||||||||||||||||
Sbjct: 134204 ggaggagcggcgtgtggtgg 134185
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>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence
          Length = 220443

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 431    attgaggttttctcttccttggtc 454
              ||||| ||||||||||||||||||
Sbjct: 173776 attgatgttttctcttccttggtc 173753
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>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0525F01
          Length = 151668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   ggaggagcggcgtgtggtgg 300
             ||||||||||||||||||||
Sbjct: 29757 ggaggagcggcgtgtggtgg 29738
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>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 111686

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   aacaaaaattaaacaaaatt 570
             ||||||||||||||||||||
Sbjct: 55058 aacaaaaattaaacaaaatt 55077
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>emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in linkage group 15,
             complete sequence
          Length = 154452

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   aagaacaaaaattaaacaaa 567
             ||||||||||||||||||||
Sbjct: 84377 aagaacaaaaattaaacaaa 84358
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>emb|AL805974.8| Mouse DNA sequence from clone RP23-334F21 on chromosome X, complete
             sequence
          Length = 95826

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 551   aacaaaaattaaacaaaatt 570
             ||||||||||||||||||||
Sbjct: 56329 aacaaaaattaaacaaaatt 56348
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>dbj|AK108769.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H04, full
           insert sequence
          Length = 1709

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 ttgatgattcttcttgattg 430
           ||||||||||||||||||||
Sbjct: 136 ttgatgattcttcttgattg 117
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>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0034A04
          Length = 151263

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   ttgatgattcttcttgattg 430
             ||||||||||||||||||||
Sbjct: 79895 ttgatgattcttcttgattg 79876
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>gb|AC101774.6| Mus musculus chromosome 19, clone RP24-113J17, complete sequence
          Length = 209547

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 551   aacaaaaattaaacaaaatt 570
             ||||||||||||||||||||
Sbjct: 89835 aacaaaaattaaacaaaatt 89816
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>dbj|AP002444.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-262A12, complete
             sequence
          Length = 174558

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   tatgatttgatgattcttct 424
             ||||||||||||||||||||
Sbjct: 93577 tatgatttgatgattcttct 93558
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 334     tgcgcgcgtcctcgacgaggttgc 357
               ||||||||| ||||||||||||||
Sbjct: 2370771 tgcgcgcgttctcgacgaggttgc 2370794
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>dbj|AP006368.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT21K08, TM0191,
             complete sequence
          Length = 76693

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 555   aaaattaaacaaaattagtgtttc 578
             ||||||||||||| ||||||||||
Sbjct: 12470 aaaattaaacaaatttagtgtttc 12493
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>gb|M19886.1|BOVBPGTPB Bovine GTP-binding protein (smg p25B) mRNA, complete cds
          Length = 735

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 247 gctgctctgcgaggagccgg 266
           ||||||||||||||||||||
Sbjct: 512 gctgctctgcgaggagccgg 493
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 472     gatgcttcaaccatctgttc 491
               ||||||||||||||||||||
Sbjct: 1711001 gatgcttcaaccatctgttc 1711020
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>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete
             sequence
          Length = 144239

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 422   tcttgattgattgaggttttctct 445
             ||||||||||||| ||||||||||
Sbjct: 64753 tcttgattgattgtggttttctct 64776


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,364,599
Number of Sequences: 3902068
Number of extensions: 5364599
Number of successful extensions: 112977
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112249
Number of HSP's gapped (non-prelim): 728
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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