ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26d15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 84 ggcggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacaccatcgcc 143 ||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct: 27237840 ggcggccactgcctcggcctcgccgaccccgtcggcaacatcatcctcaacgccatcgcc 27237781 Query: 144 c 144 | Sbjct: 27237780 c 27237780 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacacc 137 ||||||| | |||||||||||||||||||| Sbjct: 27236873 gaccccgcctccaacatcatcctcaacacc 27236844
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 73.8 bits (37), Expect = 6e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 84 ggcggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacaccatcgcc 143 ||||||| ||||||||||||| |||||||||| |||||||||||||||| |||||||| Sbjct: 94856 ggcggccactgcctcggcctcgccgaccccgtcggcaacatcatcctcaacgccatcgcc 94797 Query: 144 c 144 | Sbjct: 94796 c 94796 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacacc 137 ||||||| | |||||||||||||||||||| Sbjct: 93889 gaccccgcctccaacatcatcctcaacacc 93860
>ref|XM_469387.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1855 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||| ||||| |||||||||||||| |||||||| || ||||||||||| Sbjct: 33 cggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatc 87
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||| ||||| |||||||||||||| |||||||| || ||||||||||| Sbjct: 27692522 cggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatc 27692576 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||||| ||||||||||| ||||||||||| Sbjct: 27805907 ctggaccccgtctccaacatcatcgtcaacaccatc 27805872
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||| ||||| |||||||||||||| |||||||| || ||||||||||| Sbjct: 27783845 cggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatc 27783899 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||||| ||||||||||| ||||||||||| Sbjct: 27897231 ctggaccccgtctccaacatcatcgtcaacaccatc 27897196
>gb|AC123974.6| Oryza sativa chromosome 3 BAC OSJNBb0021P10 genomic sequence, complete sequence Length = 136982 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||| ||||| |||||||||||||| |||||||| || ||||||||||| Sbjct: 134219 cggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatc 134273
>ref|NM_196070.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0089F16.8), mRNA Length = 1944 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 925 gaccccgtctccaacatcatcctcaacaccatc 957
>ref|NM_196068.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0089F16.15), mRNA Length = 1308 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 1003 gaccccgtctccaacatcatcctcaacaccatc 1035 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctcctggaccccgtcgccaacatcatc 128 |||||| ||||| |||||| |||||| |||||| ||||||||||| Sbjct: 370 ggcggcttctgcttcggccccctggatcccgtctccaacatcatc 414
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 58113 gaccccgtctccaacatcatcctcaacaccatc 58145 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 49531 gaccccgtctccaacatcatcctcaacaccatc 49563 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctcctggaccccgtcgccaacatcatc 128 |||||| ||||| |||||| |||||| |||||| ||||||||||| Sbjct: 48767 ggcggcttctgcttcggccccctggatcccgtctccaacatcatc 48811
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 10900003 gaccccgtctccaacatcatcctcaacaccatc 10900035 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 10891421 gaccccgtctccaacatcatcctcaacaccatc 10891453 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctcctggaccccgtcgccaacatcatc 128 |||||| ||||| |||||| |||||| |||||| ||||||||||| Sbjct: 10890657 ggcggcttctgcttcggccccctggatcccgtctccaacatcatc 10890701 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaacac 136 ||||||| ||| ||||||||||||||||||| Sbjct: 1029361 tggacccagtctccaacatcatcctcaacac 1029331 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||| ||| ||||||||||| ||||||||||| Sbjct: 6388763 gaccctgtctccaacatcatcatcaacaccatc 6388731
>dbj|AK100083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G01, full insert sequence Length = 2382 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 987 gaccccgtctccaacatcatcctcaacaccatc 1019
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 10906043 gaccccgtctccaacatcatcctcaacaccatc 10906075 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||||||||||| Sbjct: 10897461 gaccccgtctccaacatcatcctcaacaccatc 10897493 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctcctggaccccgtcgccaacatcatc 128 |||||| ||||| |||||| |||||| |||||| ||||||||||| Sbjct: 10896697 ggcggcttctgcttcggccccctggatcccgtctccaacatcatc 10896741 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaacac 136 ||||||| ||| ||||||||||||||||||| Sbjct: 1029358 tggacccagtctccaacatcatcctcaacac 1029328 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||| ||| ||||||||||| ||||||||||| Sbjct: 6390749 gaccctgtctccaacatcatcatcaacaccatc 6390717
>ref|XM_469410.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1710 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||||| ||||||||||| ||||||||||| Sbjct: 601 ctggaccccgtctccaacatcatcgtcaacaccatc 636
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||||| ||||||||||| ||||||||||| Sbjct: 50037 ctggaccccgtctccaacatcatcgtcaacaccatc 50002
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||||||| ||||||||||| ||||||||||| Sbjct: 7986 ctggaccccgtctccaacatcatcgtcaacaccatc 8021
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 120554 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 120595 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 47909 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 47950
>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0088N01, complete sequence Length = 123954 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 100725 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 100766
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| ||||||||||||||||| || |||||| |||| Sbjct: 4795932 gaccccgtcaccaacatcatcctcaacgccgtcgcccacctc 4795973 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| ||||||||||||||||| || |||||| |||| Sbjct: 4774946 gaccccgtcaccaacatcatcctcaacgccgtcgcccacctc 4774987
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 5249490 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 5249449 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 5176845 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 5176804 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||| ||||||| Sbjct: 248462 gaccccgtcaccaacatcatcctcaccaccatc 248494
>dbj|AK121578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036K16, full insert sequence Length = 1861 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 352 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 393
>dbj|AK072329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E06, full insert sequence Length = 2667 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 352 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 393
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 5315967 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 5315926 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| |||||||||||||||| ||||||||| |||| Sbjct: 5243322 gaccccgtcagcaacatcatcctcaacgccatcgcccacctc 5243281 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||| ||||||| Sbjct: 248462 gaccccgtcaccaacatcatcctcaccaccatc 248494
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| ||||||||||||||||| || |||||| |||| Sbjct: 4795913 gaccccgtcaccaacatcatcctcaacgccgtcgcccacctc 4795954 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| ||||||||||||||||| || |||||| |||| Sbjct: 4774927 gaccccgtcaccaacatcatcctcaacgccgtcgcccacctc 4774968
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| ||||||||||||||||| || |||||| |||| Sbjct: 72185 gaccccgtcaccaacatcatcctcaacgccgtcgcccacctc 72144 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatcgccctcctc 149 ||||||||| ||||||||||||||||| || |||||| |||| Sbjct: 51199 gaccccgtcaccaacatcatcctcaacgccgtcgcccacctc 51158
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 43423 tggaccccgtctccaacatcatcctcaac 43395 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 39270 tggaccccgtctccaacatcatcctcaac 39242
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 28259181 tggaccccgtctccaacatcatcctcaac 28259153 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 28255028 tggaccccgtctccaacatcatcctcaac 28255000
>dbj|AK119265.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A05, full insert sequence Length = 2752 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 1656 tggaccccgtctccaacatcatcctcaac 1684
>dbj|AK109853.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F11, full insert sequence Length = 2010 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 803 tggaccccgtctccaacatcatcctcaac 831
>dbj|AK072262.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005F03, full insert sequence Length = 2479 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 106 tggaccccgtcgccaacatcatcctcaac 134 ||||||||||| ||||||||||||||||| Sbjct: 1120 tggaccccgtctccaacatcatcctcaac 1148
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||||||| ||||||||||||||| ||||||| Sbjct: 56531 gaccccgtcaccaacatcatcctcaccaccatc 56499
>ref|XM_483520.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2552 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacacc 137 |||| ||||| |||||||| |||| ||| || ||||||||||| |||||||| Sbjct: 303 cggcgtctgcttcggcctcatggatcccatctccaacatcatcgtcaacacc 354 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 118 ccaacatcatcctcaacaccatc 140 ||||||||||||||||||||||| Sbjct: 1165 ccaacatcatcctcaacaccatc 1187
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Minus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacacc 137 |||| ||||| |||||||| |||| ||| || ||||||||||| |||||||| Sbjct: 26708849 cggcgtctgcttcggcctcatggatcccatctccaacatcatcgtcaacacc 26708798 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 ccaacatcatcctcaacaccatc 140 ||||||||||||||||||||||| Sbjct: 26707987 ccaacatcatcctcaacaccatc 26707965
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Minus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacacc 137 |||| ||||| |||||||| |||| ||| || ||||||||||| |||||||| Sbjct: 120376 cggcgtctgcttcggcctcatggatcccatctccaacatcatcgtcaacacc 120325 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 ccaacatcatcctcaacaccatc 140 ||||||||||||||||||||||| Sbjct: 119514 ccaacatcatcctcaacaccatc 119492
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Minus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacacc 137 |||| ||||| |||||||| |||| ||| || ||||||||||| |||||||| Sbjct: 52191 cggcgtctgcttcggcctcatggatcccatctccaacatcatcgtcaacacc 52140 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 ccaacatcatcctcaacaccatc 140 ||||||||||||||||||||||| Sbjct: 51329 ccaacatcatcctcaacaccatc 51307
>dbj|AK065449.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003P03, full insert sequence Length = 2552 Score = 48.1 bits (24), Expect = 0.032 Identities = 45/52 (86%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctggaccccgtcgccaacatcatcctcaacacc 137 |||| ||||| |||||||| |||| ||| || ||||||||||| |||||||| Sbjct: 303 cggcgtctgcttcggcctcatggatcccatctccaacatcatcgtcaacacc 354 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 118 ccaacatcatcctcaacaccatc 140 ||||||||||||||||||||||| Sbjct: 1165 ccaacatcatcctcaacaccatc 1187
>ref|NM_194605.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0023I19.3), mRNA Length = 1041 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Plus Query: 106 tggaccccgtcgccaacatcatcctcaacac 136 ||||||| ||| ||||||||||||||||||| Sbjct: 125 tggacccagtctccaacatcatcctcaacac 155
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaacac 136 ||||||| ||| ||||||||||||||||||| Sbjct: 1029361 tggacccagtctccaacatcatcctcaacac 1029331
>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence Length = 157450 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 106 tggaccccgtcgccaacatcatcctcaacac 136 ||||||| ||| ||||||||||||||||||| Sbjct: 26814 tggacccagtctccaacatcatcctcaacac 26784
>dbj|AK111754.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F18, full insert sequence Length = 2791 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaac 134 ||||||||| ||||||||||||||||| Sbjct: 444 gaccccgtcaccaacatcatcctcaac 470
>emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chromosome 2, complete sequence Length = 219568 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 212 cagcagcagcagctggaacacca 234 ||||||||||||||||||||||| Sbjct: 8434 cagcagcagcagctggaacacca 8456
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 aaggcggcctctgcctcggcct 103 |||||||||||||||||||||| Sbjct: 696496 aaggcggcctctgcctcggcct 696475
>gb|AC122365.4| Mus musculus BAC clone RP23-447A7 from chromosome 5, complete sequence Length = 195492 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcctg 107 |||||||||||||||||||||| Sbjct: 45554 cggcctctgcctcggcctcctg 45575
>gb|AC109603.8| Mus musculus strain 129/Sv clone ct7-534h6 map 5, complete sequence Length = 81390 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 cggcctctgcctcggcctcctg 107 |||||||||||||||||||||| Sbjct: 81092 cggcctctgcctcggcctcctg 81071
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Plus Query: 389 cgccgatctcgccctcgccgtccagc 414 ||||||||| |||||||||||||||| Sbjct: 142969 cgccgatctggccctcgccgtccagc 142994
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 44.1 bits (22), Expect = 0.50 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 ggtacgaggaggcgttcgagcggctg 26 |||| ||||||||||||||||||||| Sbjct: 965468 ggtatgaggaggcgttcgagcggctg 965443
>gb|AC096996.2| Homo sapiens chromosome 16 clone RP11-3M1, complete sequence Length = 194632 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 213 agcagcagcagctggaacacca 234 |||||||||||||||||||||| Sbjct: 156688 agcagcagcagctggaacacca 156709
>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence Length = 183088 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 213 agcagcagcagctggaacacca 234 |||||||||||||||||||||| Sbjct: 86982 agcagcagcagctggaacacca 86961
>ref|NM_195360.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0003P07.17), mRNA Length = 3513 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||| ||| ||||||||||| ||||||||||| Sbjct: 934 gaccctgtctccaacatcatcatcaacaccatc 966
>gb|AC093612.18| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0003P07, complete sequence Length = 175116 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 108 gaccccgtcgccaacatcatcctcaacaccatc 140 ||||| ||| ||||||||||| ||||||||||| Sbjct: 106793 gaccctgtctccaacatcatcatcaacaccatc 106761
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 acgaggaggcgttcgagcggc 24 ||||||||||||||||||||| Sbjct: 1819961 acgaggaggcgttcgagcggc 1819941
>gb|BC054384.1| Mus musculus MARVEL (membrane-associating) domain containing 1, mRNA (cDNA clone MGC:62793 IMAGE:6475446), complete cds Length = 3061 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 662 ggcggcctctgcctcggcctc 682
>gb|AC114645.9| Mus musculus chromosome 9, clone RP24-131G14, complete sequence Length = 214734 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 cctctgcctcggcctcctgga 109 ||||||||||||||||||||| Sbjct: 207128 cctctgcctcggcctcctgga 207148
>gb|AC110235.13| Mus musculus chromosome 9, clone RP23-100M12, complete sequence Length = 220755 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 cctctgcctcggcctcctgga 109 ||||||||||||||||||||| Sbjct: 203982 cctctgcctcggcctcctgga 203962
>ref|XM_977387.1| PREDICTED: Mus musculus MARVEL (membrane-associating) domain containing 1 (Marveld1), mRNA Length = 2598 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 439 ggcggcctctgcctcggcctc 459
>ref|XM_994605.1| PREDICTED: Mus musculus MARVEL (membrane-associating) domain containing 1 (Marveld1), mRNA Length = 2848 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 688 ggcggcctctgcctcggcctc 708
>emb|CT009708.6| Mouse DNA sequence from clone RP23-82F10 on chromosome 9, complete sequence Length = 247670 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 gacaagaggagatccaagaggctgg 198 |||||||||| |||||||||||||| Sbjct: 137411 gacaagaggaaatccaagaggctgg 137387
>gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosome 19, complete sequence Length = 161150 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 213 ggcggcctctgcctcggcctc 193
>ref|NM_153625.1| Rattus norvegicus solute carrier family 12 (potassium/chloride transporters), member 8 (Slc12a8), mRNA Length = 2452 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gggacagcagcagcagctgga 228 ||||||||||||||||||||| Sbjct: 607 gggacagcagcagcagctgga 587
>gb|AF317661.1| Candida albicans 60S acidic ribosomal protein type P2-A (p2A) gene, complete cds Length = 476 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 212 cagcagcagcagctggaacaccagctggg 240 ||||||||||||||||| |||||| |||| Sbjct: 336 cagcagcagcagctggagcaccagatggg 308
>dbj|AB028994.3| Homo sapiens mRNA for KIAA1071 protein, partial cds Length = 5667 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 agacgggacagcagcagcagctgga 228 ||||||| ||||||||||||||||| Sbjct: 1557 agacggggcagcagcagcagctgga 1533
>gb|DQ357071.1| Saccharothrix espanaensis caffeic acid biosynthetic gene locus, partial sequence Length = 6049 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 397 tcgccctcgccgtccagctggtcgagcac 425 |||||| ||||||| |||||||||||||| Sbjct: 5334 tcgcccgcgccgtcgagctggtcgagcac 5306
>dbj|AK132243.1| Mus musculus 12 days embryo embryonic body below diaphragm region cDNA, RIKEN full-length enriched library, clone:3732409E02 product:MARVEL (membrane-associating) domain containing 1, full insert sequence Length = 3062 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 690 ggcggcctctgcctcggcctc 710
>gb|AY057113.1| Paracoccidioides brasiliensis dynamin mRNA, partial cds Length = 615 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 116 cgccaacatcatcctcaacaccatc 140 |||||||||||||||||||| |||| Sbjct: 255 cgccaacatcatcctcaacatcatc 279
>dbj|AK081212.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030005I21 product:HYPOTHETICAL 18.9 KDA PROTEIN homolog [Homo sapiens], full insert sequence Length = 2550 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 382 ggcggcctctgcctcggcctc 402
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 acgaggaggcgttcgagcggc 24 ||||||||||||||||||||| Sbjct: 201578 acgaggaggcgttcgagcggc 201598
>gb|AF286598.1|AF286598 Homo sapiens angiomotin mRNA, complete cds Length = 6888 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 agacgggacagcagcagcagctgga 228 ||||||| ||||||||||||||||| Sbjct: 2353 agacggggcagcagcagcagctgga 2329
>gb|AY987378.1| Homo sapiens angiomotin p130 isoform (AMOT) mRNA, complete cds, alternatively spliced Length = 3255 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 agacgggacagcagcagcagctgga 228 ||||||| ||||||||||||||||| Sbjct: 2784 agacggggcagcagcagcagctgga 2760
>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence Length = 129690 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 agacgggacagcagcagcagctgga 228 ||||||| ||||||||||||||||| Sbjct: 72021 agacggggcagcagcagcagctgga 71997
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 cacgccgatctcgccctcgccgtcc 411 |||||||||||||||| |||||||| Sbjct: 1091979 cacgccgatctcgcccgcgccgtcc 1092003
>dbj|AB024431.1| Rattus norvegicus ccc9b mRNA for cation-chloride cotransporter 9 homolog, complete cds Length = 2192 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gggacagcagcagcagctgga 228 ||||||||||||||||||||| Sbjct: 607 gggacagcagcagcagctgga 587
>dbj|AB024430.1| Rattus norvegicus ccc9a mRNA for cation-chloride cotransporter 9 homolog, complete cds Length = 2452 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 gggacagcagcagcagctgga 228 ||||||||||||||||||||| Sbjct: 607 gggacagcagcagcagctgga 587
>ref|NM_133265.2| Homo sapiens angiomotin (AMOT), mRNA Length = 6514 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 agacgggacagcagcagcagctgga 228 ||||||| ||||||||||||||||| Sbjct: 2353 agacggggcagcagcagcagctgga 2329
>gb|AC000399.1|AC000399 Genomic sequence from Mouse 9, complete sequence Length = 140554 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 gacaagaggagatccaagaggctgg 198 |||||||||| |||||||||||||| Sbjct: 98398 gacaagaggaaatccaagaggctgg 98422
>ref|NM_183195.1| Mus musculus MARVEL (membrane-associating) domain containing 1 (Marveld1), mRNA Length = 3061 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 662 ggcggcctctgcctcggcctc 682
>emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on chromosome 11, complete sequence Length = 189196 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 ggcggcctctgcctcggcctc 104 ||||||||||||||||||||| Sbjct: 150004 ggcggcctctgcctcggcctc 149984
>gb|AC152960.1| Mus musculus 6 BAC RP23-38B21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222030 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cagcagcagcagctggaaca 231 |||||||||||||||||||| Sbjct: 199814 cagcagcagcagctggaaca 199833
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 acacgccgatctcgccctcg 405 |||||||||||||||||||| Sbjct: 3373293 acacgccgatctcgccctcg 3373274
>gb|AC111093.10| Mus musculus chromosome 3, clone RP23-170E22, complete sequence Length = 201202 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcctctgcctcggcctcctg 107 |||||||||||||||||||| Sbjct: 123594 gcctctgcctcggcctcctg 123613
>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence Length = 212727 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 ggaacaccagctgggttgtg 245 |||||||||||||||||||| Sbjct: 177683 ggaacaccagctgggttgtg 177702
>ref|XM_476996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2082 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||| ||| |||||||||| ||||||||||| Sbjct: 970 ctggaccctgtctccaacatcattgtcaacaccatc 1005
>gb|AF171041.1| Anopheles funestus clone AF11 microsatellite sequence Length = 373 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cagcagcagcagctggaaca 231 |||||||||||||||||||| Sbjct: 348 cagcagcagcagctggaaca 329
>gb|AF039905.1| Homo sapiens cosmid Q95D4, chromosome 21 5' of IFNAR2 Length = 40697 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 33659 cctccacgcgtcgcccctgc 33678
>gb|AY740397.1| Homo sapiens interferon (alpha, beta and omega) receptor 2 (IFNAR2) gene, complete cds Length = 37210 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 2179 cctccacgcgtcgcccctgc 2198
>gb|BC078338.1| Rattus norvegicus cDNA clone IMAGE:7097192, partial cds Length = 4205 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 cgcaaaggcggcctctgcctcggc 101 ||||||||||||||||| |||||| Sbjct: 18 cgcaaaggcggcctctggctcggc 41
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 cctcgccgtccagctggtcgagca 424 |||||||| ||||||||||||||| Sbjct: 22061 cctcgccggccagctggtcgagca 22038
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 cctcgccgtccagctggtcgagca 424 |||||||| ||||||||||||||| Sbjct: 88706 cctcgccggccagctggtcgagca 88683
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 cctcgccgtccagctggtcgagca 424 |||||||| ||||||||||||||| Sbjct: 277294 cctcgccggccagctggtcgagca 277271
>ref|XM_323755.1| Neurospora crassa OR74A predicted protein (NCU04403.1) partial mRNA Length = 1401 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 cagcagctggaacaccagctgggt 241 ||||||||||||||||||| |||| Sbjct: 149 cagcagctggaacaccagcagggt 172
>ref|XM_952387.1| Neurospora crassa OR74A hypothetical protein (NCU04403.1) partial mRNA Length = 1401 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 cagcagctggaacaccagctgggt 241 ||||||||||||||||||| |||| Sbjct: 149 cagcagctggaacaccagcagggt 172
>ref|XM_595044.2| PREDICTED: Bos taurus similar to tripartite motif-containing 62 (LOC516886), mRNA Length = 2151 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggaggcgttcgagcggctgc 27 |||||||||||||||||||| Sbjct: 1260 ggaggcgttcgagcggctgc 1279
>gb|AC005153.2| Homo sapiens PAC clone RP4-537P9 from 7, complete sequence Length = 124191 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ggaacaccagctgggttgtg 245 |||||||||||||||||||| Sbjct: 98539 ggaacaccagctgggttgtg 98520
>ref|XM_387720.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07544.1) partial mRNA Length = 1686 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 caagaggagatccaagaggc 195 |||||||||||||||||||| Sbjct: 78 caagaggagatccaagaggc 59
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence Length = 184128 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gggacagcagcagcagctgg 227 |||||||||||||||||||| Sbjct: 26386 gggacagcagcagcagctgg 26367
>gb|AC122794.3| Mus musculus BAC clone RP24-202L5 from chromosome 8, complete sequence Length = 157120 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ggaacaccagctgggttgtg 245 |||||||||||||||||||| Sbjct: 119220 ggaacaccagctgggttgtg 119201
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gggacagcagcagcagctgg 227 |||||||||||||||||||| Sbjct: 125593 gggacagcagcagcagctgg 125574
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 acacgccgatctcgccctcg 405 |||||||||||||||||||| Sbjct: 1214913 acacgccgatctcgccctcg 1214932
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cacgccgatctcgccctcgccgtc 410 |||||||||||||||| ||||||| Sbjct: 2380715 cacgccgatctcgcccgcgccgtc 2380738
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 cagcagctggaacaccagctgggt 241 ||||||||||||||||||| |||| Sbjct: 23962 cagcagctggaacaccagcagggt 23939
>emb|BX284745.1|NCB18E6 Neurospora crassa DNA linkage group II BAC clone B18E6 Length = 68593 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gacgggacagcagcagcagc 224 |||||||||||||||||||| Sbjct: 13898 gacgggacagcagcagcagc 13917
>emb|AL645913.12| Mouse DNA sequence from clone RP23-194G14 on chromosome 11 Contains the 3' end of gene 9130006A14Rik, the 5' end of the Rnf130 gene for ring finger protein 130 and a CpG island, complete sequence Length = 131007 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cctctgcctcggcctcctgg 108 |||||||||||||||||||| Sbjct: 50790 cctctgcctcggcctcctgg 50809
>emb|AL355931.1|NCB3E4 Neurospora crassa DNA linkage group II BAC clone B3E4 Length = 62421 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 gacgggacagcagcagcagc 224 |||||||||||||||||||| Sbjct: 13264 gacgggacagcagcagcagc 13245
>emb|AJ488200.1|PVI488200 Uncultured bacterium gene for putative clp protease, clone 11 Length = 2850 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 acacgccgatctcgccctcg 405 |||||||||||||||||||| Sbjct: 556 acacgccgatctcgccctcg 537
>tpg|BK002884.1| TPA: TPA_inf: Drosophila melanogaster HDC16060 (HDC16060) gene, complete cds Length = 2164 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cagcagcagcagctggaaca 231 |||||||||||||||||||| Sbjct: 2074 cagcagcagcagctggaaca 2055
>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence Length = 234665 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcctctgcctcggcctcctg 107 |||||||||||||||||||| Sbjct: 97211 gcctctgcctcggcctcctg 97230
>gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419L20, complete sequence Length = 175742 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 gcctctgcctcggcctcctg 107 |||||||||||||||||||| Sbjct: 113491 gcctctgcctcggcctcctg 113472
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||| ||| |||||||||| ||||||||||| Sbjct: 5271794 ctggaccctgtctccaacatcattgtcaacaccatc 5271759
>gb|AC008028.3|AC008028 Drosophila melanogaster, chromosome 3R, region 98C-98D, BAC clone BACR14L13, complete sequence Length = 197348 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cagcagcagcagctggaaca 231 |||||||||||||||||||| Sbjct: 94366 cagcagcagcagctggaaca 94347
>gb|AF323964.1|AF323964 Azospirillum brasilense PII protein (glnB) gene, complete cds; and GS protein (glnA) gene, partial cds Length = 3726 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gccggtggaagccgccgacc 60 |||||||||||||||||||| Sbjct: 805 gccggtggaagccgccgacc 786
>dbj|AP000043.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 14/28, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 52253 cctccacgcgtcgcccctgc 52272
>gb|AF530054.1| Azospirillum brasilense Yu62 clpP-tig gene cluster Length = 6369 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gccggtggaagccgccgacc 60 |||||||||||||||||||| Sbjct: 5084 gccggtggaagccgccgacc 5065
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 cgccgatctcgccctcgccgtcca 412 ||||||||||| |||||||||||| Sbjct: 3235219 cgccgatctcgacctcgccgtcca 3235242
>dbj|AP005257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0417F02 Length = 150660 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||| ||| |||||||||| ||||||||||| Sbjct: 6158 ctggaccctgtctccaacatcattgtcaacaccatc 6123
>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0589E08 Length = 138416 Score = 40.1 bits (20), Expect = 7.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 105 ctggaccccgtcgccaacatcatcctcaacaccatc 140 |||||||| ||| |||||||||| ||||||||||| Sbjct: 70557 ctggaccctgtctccaacatcattgtcaacaccatc 70522
>emb|AL954215.1| Pan troglodytes chromosome 22 clone RP43-034B14 map 22q22.11, complete sequence Length = 153187 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 130714 cctccacgcgtcgcccctgc 130733
>emb|AL954214.1| Pan troglodytes chromosome 22 clone PTB-026G12 map 22q22.11, complete sequence Length = 149317 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 144286 cctccacgcgtcgcccctgc 144305
>emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on chromosome 2, complete sequence Length = 171715 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 agcagcagcagctggaacac 232 |||||||||||||||||||| Sbjct: 121819 agcagcagcagctggaacac 121838
>gb|AC125468.5| Mus musculus BAC clone RP24-113D21 from 7, complete sequence Length = 197913 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 cgcaaaggcggcctctgcctcggc 101 ||||||||||||||||| |||||| Sbjct: 12617 cgcaaaggcggcctctggctcggc 12640
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgccgatctcgccctcgccg 408 |||||||||||||||||||| Sbjct: 9705 cgccgatctcgccctcgccg 9724
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 cgccgatctcgccctcgccg 408 |||||||||||||||||||| Sbjct: 104652 cgccgatctcgccctcgccg 104671
>gb|AE003765.3| Drosophila melanogaster chromosome 3R, section 103 of 118 of the complete sequence Length = 239049 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cagcagcagcagctggaaca 231 |||||||||||||||||||| Sbjct: 70045 cagcagcagcagctggaaca 70026
>dbj|AP001716.1| Homo sapiens genomic DNA, chromosome 21q, section 60/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 178403 cctccacgcgtcgcccctgc 178422
>gb|AC153833.5| Mus musculus 6 BAC RP23-308F24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 170164 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cagcagcagcagctggaaca 231 |||||||||||||||||||| Sbjct: 40121 cagcagcagcagctggaaca 40140
>gb|L42237.1|HUMIFNAM01 Homo sapiens (clone Q-2OD3) interferon receptor (IFNAR2) gene, exon 1 Length = 1296 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 719 cctccacgcgtcgcccctgc 738
>gb|AC161441.21| Mus musculus chromosome 7, clone RP24-158L15, complete sequence Length = 159403 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 78 cgcaaaggcggcctctgcctcggc 101 ||||||||||||||||| |||||| Sbjct: 49076 cgcaaaggcggcctctggctcggc 49053
>gb|AY876149.1| Clavibacter michiganensis subsp. insidiosus strain DSM 340 CTP synthase gene, partial cds Length = 986 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 cggcctctgcctcggcctcc 105 |||||||||||||||||||| Sbjct: 579 cggcctctgcctcggcctcc 598
>dbj|AP000292.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:Q95D4, complete sequence Length = 38209 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 33666 cctccacgcgtcgcccctgc 33685
>dbj|AP000187.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 14/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 58229 cctccacgcgtcgcccctgc 58248
>dbj|AP000111.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 14/20 Length = 100000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 539 cctccacgcgtcgcccctgc 558 |||||||||||||||||||| Sbjct: 58229 cctccacgcgtcgcccctgc 58248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,835,896 Number of Sequences: 3902068 Number of extensions: 4835896 Number of successful extensions: 231920 Number of sequences better than 10.0: 128 Number of HSP's better than 10.0 without gapping: 134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 230089 Number of HSP's gapped (non-prelim): 1831 length of query: 571 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 548 effective length of database: 17,143,297,704 effective search space: 9394527141792 effective search space used: 9394527141792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
