ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25o11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA 482 e-133
2dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 482 e-133
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
4dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
5dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic D... 278 1e-71
6gb|AC150398.3| Branchiostoma floridae clone CH302-18L14, complet... 42 1.4
7ref|XM_417116.1| PREDICTED: Gallus gallus similar to High-affini... 42 1.4
8gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosom... 42 1.4
9ref|XM_535006.2| PREDICTED: Canis familiaris bullous pemphigoid ... 42 1.4
10gb|AF016649.2|AF016649 Canis familiaris bullous pemphigoid autoa... 42 1.4
11dbj|AB027759.1| Mesocricetus auratus mRNA for collagen type XVII... 42 1.4
12ref|XM_363366.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.7
13gb|AC101983.16| Mus musculus chromosome 6, clone RP24-352A8, com... 40 5.7
14gb|AF091512.1| Homo sapiens familial mediterranean fever locus g... 40 5.7
15gb|AC183598.2| Pan troglodytes BAC clone CH251-455P14 from chrom... 40 5.7
16ref|XM_957909.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
17ref|XM_326044.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.7
18gb|AC005011.2| Homo sapiens BAC clone GS1-111G14 from 7, complet... 40 5.7
19gb|AC147344.2| Pan troglodytes BAC clone CH251-4O16 from Y, comp... 40 5.7
20gb|AC069248.4| Homo sapiens chromosome 3 clone RP11-6I21 map 3p,... 40 5.7
21gb|AC146206.3| Pan troglodytes BAC clone CH251-395K13 from Y, co... 40 5.7
22gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-3... 40 5.7
23emb|AL137858.4| Human DNA sequence from clone RP5-1189N14 on chr... 40 5.7
24emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, ... 40 5.7
25gb|AC163012.4| Mus musculus chromosome 8, clone RP23-22A17, comp... 40 5.7
26dbj|BS000560.1| Pan troglodytes chromosome Y clone:PTB-475G01, c... 40 5.7
27emb|BX649258.11| Zebrafish DNA sequence from clone CH211-203F4 i... 40 5.7
28gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.7
29emb|CR394533.7| Human DNA sequence from clone XX-HCC1954_10I10, ... 40 5.7
30gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, comple... 40 5.7
31gb|AC155941.3| Mus musculus 10 BAC RP24-496C8 (Roswell Park Canc... 40 5.7
32gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, com... 40 5.7
33gb|AY913765.1|AY913764S2 Gorilla gorilla ZFY (ZFY) gene, complet... 40 5.7
34gb|AY913763.1| Pan troglodytes ZFY (ZFY) gene, complete cds 40 5.7
35gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P... 40 5.7
36gb|AC005533.2|AC005533 Homo sapiens PAC clone RP4-794K21 from 14... 40 5.7
37gb|AC009283.6| Homo sapiens chromosome 17, clone RP11-390P24, co... 40 5.7
38ref|XM_219976.3| PREDICTED: Rattus norvegicus procollagen, type ... 40 5.7
39gb|AF114156.1|AF114156 Homo sapiens Y-linked zinc finger protein... 40 5.7
40gb|AC112947.8| Mus musculus chromosome 8, clone RP23-375F22, com... 40 5.7
41gb|AC006157.2|AC006157 Homo sapiens BAC clone RP11-414C23 from Y... 40 5.7
42emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in ... 40 5.7
43emb|AJ003147.1|HSAJ03147 Homo sapiens complete genomic sequence ... 40 5.7 
>ref|XM_481635.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2371

 Score =  482 bits (243), Expect = e-133
 Identities = 327/355 (92%)
 Strand = Plus / Plus

                                                                       
Query: 69  atatcagggatcagttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 128
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atatcagggatctgttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 687

                                                                       
Query: 129 atcctcaatacctcagggatttgcgacagcggatacgggaagttcaaaaggtgcttggtg 188
           |||| || |||||||  || ||| | |||||||| ||||||||||||||||| |||||||
Sbjct: 688 atccccagtacctcaaagacttgaggcagcggattcgggaagttcaaaaggttcttggtg 747

                                                                       
Query: 189 atgcatccaaggactctgatctaccaaagaatgccaatgagaaggtgaaagcacttgagc 248
           |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 748 atgcatccaaggactccgatctacccaagaatgccaatgagaaggtgaaaacacttgagc 807

                                                                       
Query: 249 agacattggtcaagggcaaacagacacaggatgattgctctgttgctgtcaaaaagctcc 308
           ||||| || ||||||| |||| ||  ||||||||||| ||||||| |||||||||||| |
Sbjct: 808 agacactgatcaagggaaaactgatgcaggatgattgttctgttgttgtcaaaaagcttc 867

                                                                       
Query: 309 gggctatgcttcactcagcagaggagcagctgcatgcacaaaagaagcaaactgtttttc 368
           | ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 868 gagctatgcttcactcagctgaggagcaactgcatgcacacaagaagcaaactgttttcc 927

                                                                  
Query: 369 taacacaacttgcagccaaaacccttcccaaaggtcttcactgcctccccttgag 423
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 928 taacacaacttgcagccaaaacccttcccaagggtcttcactgcctccccttgag 982
to top
>dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full
           insert sequence
          Length = 2371

 Score =  482 bits (243), Expect = e-133
 Identities = 327/355 (92%)
 Strand = Plus / Plus

                                                                       
Query: 69  atatcagggatcagttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 128
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atatcagggatctgttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 687

                                                                       
Query: 129 atcctcaatacctcagggatttgcgacagcggatacgggaagttcaaaaggtgcttggtg 188
           |||| || |||||||  || ||| | |||||||| ||||||||||||||||| |||||||
Sbjct: 688 atccccagtacctcaaagacttgaggcagcggattcgggaagttcaaaaggttcttggtg 747

                                                                       
Query: 189 atgcatccaaggactctgatctaccaaagaatgccaatgagaaggtgaaagcacttgagc 248
           |||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 748 atgcatccaaggactccgatctacccaagaatgccaatgagaaggtgaaaacacttgagc 807

                                                                       
Query: 249 agacattggtcaagggcaaacagacacaggatgattgctctgttgctgtcaaaaagctcc 308
           ||||| || ||||||| |||| ||  ||||||||||| ||||||| |||||||||||| |
Sbjct: 808 agacactgatcaagggaaaactgatgcaggatgattgttctgttgttgtcaaaaagcttc 867

                                                                       
Query: 309 gggctatgcttcactcagcagaggagcagctgcatgcacaaaagaagcaaactgtttttc 368
           | ||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 868 gagctatgcttcactcagctgaggagcaactgcatgcacacaagaagcaaactgttttcc 927

                                                                  
Query: 369 taacacaacttgcagccaaaacccttcccaaaggtcttcactgcctccccttgag 423
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 928 taacacaacttgcagccaaaacccttcccaagggtcttcactgcctccccttgag 982
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                            
Query: 220      tgccaatgagaaggtgaaagcacttgagcagacattggtcaagggcaaacagacacagga 279
                ||||||||||||||||||| |||||||||||||| || ||||||| |||| ||  |||||
Sbjct: 14393300 tgccaatgagaaggtgaaaacacttgagcagacactgatcaagggaaaactgatgcagga 14393359

                                                                            
Query: 280      tgattgctctgttgctgtcaaaaagctccgggctatgcttcactcagcagaggagcagct 339
                |||||| ||||||| |||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 14393360 tgattgttctgttgttgtcaaaaagcttcgagctatgcttcactcagctgaggagcaact 14393419

                                                                            
Query: 340      gcatgcacaaaagaagcaaactgtttttctaacacaacttgcagccaaaacccttcccaa 399
                ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 14393420 gcatgcacacaagaagcaaactgttttcctaacacaacttgcagccaaaacccttcccaa 14393479

                                        
Query: 400      aggtcttcactgcctccccttgag 423
                 |||||||||||||||||||||||
Sbjct: 14393480 gggtcttcactgcctccccttgag 14393503



 Score =  204 bits (103), Expect = 2e-49
 Identities = 139/151 (92%)
 Strand = Plus / Plus

                                                                            
Query: 69       atatcagggatcagttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 128
                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14393032 atatcagggatctgttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 14393091

                                                                            
Query: 129      atcctcaatacctcagggatttgcgacagcggatacgggaagttcaaaaggtgcttggtg 188
                |||| || |||||||  || ||| | |||||||| ||||||||||||||||| |||||||
Sbjct: 14393092 atccccagtacctcaaagacttgaggcagcggattcgggaagttcaaaaggttcttggtg 14393151

                                               
Query: 189      atgcatccaaggactctgatctaccaaagaa 219
                |||||||||||||||| |||||||| |||||
Sbjct: 14393152 atgcatccaaggactccgatctacccaagaa 14393182
to top
>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0670E08
          Length = 133106

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                         
Query: 220   tgccaatgagaaggtgaaagcacttgagcagacattggtcaagggcaaacagacacagga 279
             ||||||||||||||||||| |||||||||||||| || ||||||| |||| ||  |||||
Sbjct: 37583 tgccaatgagaaggtgaaaacacttgagcagacactgatcaagggaaaactgatgcagga 37642

                                                                         
Query: 280   tgattgctctgttgctgtcaaaaagctccgggctatgcttcactcagcagaggagcagct 339
             |||||| ||||||| |||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 37643 tgattgttctgttgttgtcaaaaagcttcgagctatgcttcactcagctgaggagcaact 37702

                                                                         
Query: 340   gcatgcacaaaagaagcaaactgtttttctaacacaacttgcagccaaaacccttcccaa 399
             ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 37703 gcatgcacacaagaagcaaactgttttcctaacacaacttgcagccaaaacccttcccaa 37762

                                     
Query: 400   aggtcttcactgcctccccttgag 423
              |||||||||||||||||||||||
Sbjct: 37763 gggtcttcactgcctccccttgag 37786



 Score =  204 bits (103), Expect = 2e-49
 Identities = 139/151 (92%)
 Strand = Plus / Plus

                                                                         
Query: 69    atatcagggatcagttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 128
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37315 atatcagggatctgttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 37374

                                                                         
Query: 129   atcctcaatacctcagggatttgcgacagcggatacgggaagttcaaaaggtgcttggtg 188
             |||| || |||||||  || ||| | |||||||| ||||||||||||||||| |||||||
Sbjct: 37375 atccccagtacctcaaagacttgaggcagcggattcgggaagttcaaaaggttcttggtg 37434

                                            
Query: 189   atgcatccaaggactctgatctaccaaagaa 219
             |||||||||||||||| |||||||| |||||
Sbjct: 37435 atgcatccaaggactccgatctacccaagaa 37465
to top
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_A10
          Length = 101249

 Score =  278 bits (140), Expect = 1e-71
 Identities = 188/204 (92%)
 Strand = Plus / Plus

                                                                         
Query: 220   tgccaatgagaaggtgaaagcacttgagcagacattggtcaagggcaaacagacacagga 279
             ||||||||||||||||||| |||||||||||||| || ||||||| |||| ||  |||||
Sbjct: 96380 tgccaatgagaaggtgaaaacacttgagcagacactgatcaagggaaaactgatgcagga 96439

                                                                         
Query: 280   tgattgctctgttgctgtcaaaaagctccgggctatgcttcactcagcagaggagcagct 339
             |||||| ||||||| |||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 96440 tgattgttctgttgttgtcaaaaagcttcgagctatgcttcactcagctgaggagcaact 96499

                                                                         
Query: 340   gcatgcacaaaagaagcaaactgtttttctaacacaacttgcagccaaaacccttcccaa 399
             ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 96500 gcatgcacacaagaagcaaactgttttcctaacacaacttgcagccaaaacccttcccaa 96559

                                     
Query: 400   aggtcttcactgcctccccttgag 423
              |||||||||||||||||||||||
Sbjct: 96560 gggtcttcactgcctccccttgag 96583



 Score =  204 bits (103), Expect = 2e-49
 Identities = 139/151 (92%)
 Strand = Plus / Plus

                                                                         
Query: 69    atatcagggatcagttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 128
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96112 atatcagggatctgttaatcaaggcaaaggtctaccttggtcttggagccattcgagcaa 96171

                                                                         
Query: 129   atcctcaatacctcagggatttgcgacagcggatacgggaagttcaaaaggtgcttggtg 188
             |||| || |||||||  || ||| | |||||||| ||||||||||||||||| |||||||
Sbjct: 96172 atccccagtacctcaaagacttgaggcagcggattcgggaagttcaaaaggttcttggtg 96231

                                            
Query: 189   atgcatccaaggactctgatctaccaaagaa 219
             |||||||||||||||| |||||||| |||||
Sbjct: 96232 atgcatccaaggactccgatctacccaagaa 96262
to top
>gb|AC150398.3| Branchiostoma floridae clone CH302-18L14, complete sequence
          Length = 163878

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 397   caaaggtcttcactgcctccc 417
             |||||||||||||||||||||
Sbjct: 43378 caaaggtcttcactgcctccc 43398
to top
>ref|XM_417116.1| PREDICTED: Gallus gallus similar to High-affinity cationic amino
           acid transporter-1 (CAT-1) (CAT1) (System Y+ basic amino
           acid transporter) (Ecotropic retroviral leukemia
           receptor homolog) (ERR) (Ecotropic retrovirus receptor
           homolog) (LOC418922), mRNA
          Length = 2634

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 350 aagaagcaaactgtttttcta 370
           |||||||||||||||||||||
Sbjct: 501 aagaagcaaactgtttttcta 521
to top
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete
             sequence
          Length = 216902

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 399   aaggtcttcactgcctcccct 419
             |||||||||||||||||||||
Sbjct: 53574 aaggtcttcactgcctcccct 53554
to top
>ref|XM_535006.2| PREDICTED: Canis familiaris bullous pemphigoid autoantigen 2 (BP180),
            mRNA
          Length = 4880

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 399  aaggtcttcactgcctcccct 419
            |||||||||||||||||||||
Sbjct: 1194 aaggtcttcactgcctcccct 1214
to top
>gb|AF016649.2|AF016649 Canis familiaris bullous pemphigoid autoantigen 2 (BP180) mRNA,
            partial cds
          Length = 2219

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 399  aaggtcttcactgcctcccct 419
            |||||||||||||||||||||
Sbjct: 1200 aaggtcttcactgcctcccct 1220
to top
>dbj|AB027759.1| Mesocricetus auratus mRNA for collagen type XVII, complete cds
          Length = 4296

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 399  aaggtcttcactgcctcccct 419
            |||||||||||||||||||||
Sbjct: 1108 aaggtcttcactgcctcccct 1128
to top
>ref|XM_363366.1| Magnaporthe grisea 70-15 hypothetical protein (MG01292.4) partial
            mRNA
          Length = 2037

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  tggtcttggagccattcgag 125
            ||||||||||||||||||||
Sbjct: 1840 tggtcttggagccattcgag 1821
to top
>gb|AC101983.16| Mus musculus chromosome 6, clone RP24-352A8, complete sequence
          Length = 153860

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   caaactgtttttctaacaca 375
             ||||||||||||||||||||
Sbjct: 75175 caaactgtttttctaacaca 75194
to top
>gb|AF091512.1| Homo sapiens familial mediterranean fever locus genomic sequence
          Length = 87258

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  acagacacaggatgattgct 287
            ||||||||||||||||||||
Sbjct: 1174 acagacacaggatgattgct 1155
to top
>gb|AC183598.2| Pan troglodytes BAC clone CH251-455P14 from chromosome 7, complete
             sequence
          Length = 216847

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   aaaagaagcaaactgttttt 367
             ||||||||||||||||||||
Sbjct: 73473 aaaagaagcaaactgttttt 73454
to top
>ref|XM_957909.1| Neurospora crassa OR74A hypothetical protein (NCU06190.1) partial
            mRNA
          Length = 5793

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  cattggtcaagggcaaacag 271
            ||||||||||||||||||||
Sbjct: 3944 cattggtcaagggcaaacag 3963
to top
>ref|XM_326044.1| Neurospora crassa OR74A hypothetical protein (NCU06190.1) partial
            mRNA
          Length = 5793

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 252  cattggtcaagggcaaacag 271
            ||||||||||||||||||||
Sbjct: 3944 cattggtcaagggcaaacag 3963
to top
>gb|AC005011.2| Homo sapiens BAC clone GS1-111G14 from 7, complete sequence
          Length = 166069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   aaaagaagcaaactgttttt 367
             ||||||||||||||||||||
Sbjct: 96829 aaaagaagcaaactgttttt 96810
to top
>gb|AC147344.2| Pan troglodytes BAC clone CH251-4O16 from Y, complete sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   gcagacattggtcaagggca 266
             ||||||||||||||||||||
Sbjct: 97594 gcagacattggtcaagggca 97575
to top
>gb|AC069248.4| Homo sapiens chromosome 3 clone RP11-6I21 map 3p, complete sequence
          Length = 157493

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    agatggtaggagtagaaata 41
             ||||||||||||||||||||
Sbjct: 66552 agatggtaggagtagaaata 66533
to top
>gb|AC146206.3| Pan troglodytes BAC clone CH251-395K13 from Y, complete sequence
          Length = 161960

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gcagacattggtcaagggca 266
             ||||||||||||||||||||
Sbjct: 77140 gcagacattggtcaagggca 77159
to top
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                     
Query: 302   aagctccgggctatgcttcactcagcagaggagcagctgcatgcacaaaagaagca 357
             ||||||||||||||| | || ||| |||| |||||||| ||||  | |||||||||
Sbjct: 53574 aagctccgggctatgatccattcaacagaagagcagctacatgtgctaaagaagca 53519
to top
>emb|AL137858.4| Human DNA sequence from clone RP5-1189N14 on chromosome 1p21.3-22.3
             Contains an STS and GSSs, complete sequence
          Length = 99358

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ccctcaaaagaaaacacaga 24
             ||||||||||||||||||||
Sbjct: 17973 ccctcaaaagaaaacacaga 17954
to top
>emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, complete sequence
          Length = 164576

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   agcagctgcatgcacaaaag 352
             ||||||||||||||||||||
Sbjct: 29922 agcagctgcatgcacaaaag 29941
to top
>gb|AC163012.4| Mus musculus chromosome 8, clone RP23-22A17, complete sequence
          Length = 211779

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 349    aaagaagcaaactgtttttctaac 372
              ||||||||||||| ||||||||||
Sbjct: 169805 aaagaagcaaactatttttctaac 169828
to top
>dbj|BS000560.1| Pan troglodytes chromosome Y clone:PTB-475G01, complete sequences
          Length = 154648

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gcagacattggtcaagggca 266
              ||||||||||||||||||||
Sbjct: 137470 gcagacattggtcaagggca 137489
to top
>emb|BX649258.11| Zebrafish DNA sequence from clone CH211-203F4 in linkage group 15,
             complete sequence
          Length = 148199

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 287   tctgttgctgtcaaaaagctccgg 310
             ||||||||||| ||||||||||||
Sbjct: 91062 tctgttgctgtaaaaaagctccgg 91039
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 247      gcagacattggtcaagggca 266
                ||||||||||||||||||||
Sbjct: 23598006 gcagacattggtcaagggca 23597987
to top
>emb|CR394533.7| Human DNA sequence from clone XX-HCC1954_10I10, complete sequence
          Length = 67374

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   agcagctgcatgcacaaaag 352
             ||||||||||||||||||||
Sbjct: 25473 agcagctgcatgcacaaaag 25492



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 333  agcagctgcatgcacaaaag 352
            ||||||||||||||||||||
Sbjct: 3811 agcagctgcatgcacaaaag 3792
to top
>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence
          Length = 183846

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    aaactgtttttctaacacaa 376
              ||||||||||||||||||||
Sbjct: 145372 aaactgtttttctaacacaa 145391
to top
>gb|AC155941.3| Mus musculus 10 BAC RP24-496C8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 171195

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 317   cttcactcagcagaggagcagctg 340
             |||||| |||||||||||||||||
Sbjct: 97140 cttcacacagcagaggagcagctg 97117
to top
>gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, complete sequence
          Length = 180354

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    acagacacaggatgattgct 287
              ||||||||||||||||||||
Sbjct: 147609 acagacacaggatgattgct 147590
to top
>gb|AY913765.1|AY913764S2 Gorilla gorilla ZFY (ZFY) gene, complete cds
          Length = 77986

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gcagacattggtcaagggca 266
             ||||||||||||||||||||
Sbjct: 32790 gcagacattggtcaagggca 32809
to top
>gb|AY913763.1| Pan troglodytes ZFY (ZFY) gene, complete cds
          Length = 167166

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gcagacattggtcaagggca 266
             ||||||||||||||||||||
Sbjct: 47455 gcagacattggtcaagggca 47474
to top
>gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P1 map 3p, complete sequence
          Length = 160667

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    agatggtaggagtagaaata 41
             ||||||||||||||||||||
Sbjct: 12202 agatggtaggagtagaaata 12221
to top
>gb|AC005533.2|AC005533 Homo sapiens PAC clone RP4-794K21 from 14q24.3, complete sequence
          Length = 82347

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tcagttaatcaaggcaaagg 98
             ||||||||||||||||||||
Sbjct: 51664 tcagttaatcaaggcaaagg 51683
to top
>gb|AC009283.6| Homo sapiens chromosome 17, clone RP11-390P24, complete sequence
          Length = 175320

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    agcagctgcatgcacaaaag 352
              ||||||||||||||||||||
Sbjct: 108712 agcagctgcatgcacaaaag 108731
to top
>ref|XM_219976.3| PREDICTED: Rattus norvegicus procollagen, type XVII, alpha 1
            (predicted) (Col17a1_predicted), mRNA
          Length = 6514

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  aaggtcttcactgcctcccc 418
            ||||||||||||||||||||
Sbjct: 2506 aaggtcttcactgcctcccc 2525
to top
>gb|AF114156.1|AF114156 Homo sapiens Y-linked zinc finger protein (ZFY) gene, complete cds
          Length = 135849

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gcagacattggtcaagggca 266
              ||||||||||||||||||||
Sbjct: 128510 gcagacattggtcaagggca 128529
to top
>gb|AC112947.8| Mus musculus chromosome 8, clone RP23-375F22, complete sequence
          Length = 191154

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 349    aaagaagcaaactgtttttctaac 372
              ||||||||||||| ||||||||||
Sbjct: 131958 aaagaagcaaactatttttctaac 131935
to top
>gb|AC006157.2|AC006157 Homo sapiens BAC clone RP11-414C23 from Y, complete sequence
          Length = 154683

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gcagacattggtcaagggca 266
             ||||||||||||||||||||
Sbjct: 79487 gcagacattggtcaagggca 79506
to top
>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22,
             complete sequence
          Length = 180599

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   tgcatgcacaaaagaagcaa 358
             ||||||||||||||||||||
Sbjct: 32345 tgcatgcacaaaagaagcaa 32326
to top
>emb|AJ003147.1|HSAJ03147 Homo sapiens complete genomic sequence between D16S3070 and D16S3275,
             containing Familial Mediterranean Fever gene disease
          Length = 239566

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   acagacacaggatgattgct 287
             ||||||||||||||||||||
Sbjct: 95319 acagacacaggatgattgct 95300


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,409,281
Number of Sequences: 3902068
Number of extensions: 4409281
Number of successful extensions: 88837
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88722
Number of HSP's gapped (non-prelim): 115
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top