ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit... 636 e-179
2dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 8e-68
3ref|XM_478436.1| Oryza sativa (japonica cultivar-group), mRNA 258 2e-65
4ref|XM_463920.1| Oryza sativa (japonica cultivar-group), mRNA 218 2e-53
5gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subu... 218 2e-53
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
7dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic D... 218 2e-53
8dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
10dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic D... 204 3e-49
11gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subu... 202 1e-48
12gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence 125 2e-25
13gb|AY108580.1| Zea mays PCO078974 mRNA sequence 125 2e-25
14emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C2... 44 0.57
15ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726 ... 42 2.2
16emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 42 2.2
17gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complet... 40 8.9
18gb|AY639544.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 1... 40 8.9
19gb|AY639543.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 1... 40 8.9
20gb|AY639542.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100501 1... 40 8.9
21emb|AJ884762.1| Gigaspora rosea dispersed repeat GrosRE3-T3, clo... 40 8.9
22emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chr... 40 8.9
23emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chro... 40 8.9
24gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, co... 40 8.9
25gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.9
26gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, com... 40 8.9
27gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, com... 40 8.9
28gb|AY953190.1| Uncultured anaerobic bacterium clone A-2A 16S rib... 40 8.9
29emb|BX927400.10| Zebrafish DNA sequence from clone CH211-195K18 ... 40 8.9
30gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 8.9
31gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, compl... 40 8.9
32dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 8.9
33emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chr... 40 8.9
34dbj|AB029488.1| Homo sapiens C11orf21 mRNA, complete cds 40 8.9 
>gb|AF475119.1| Triticum aestivum succinate dehydrogenase subunit 3 mRNA, partial
           cds
          Length = 399

 Score =  636 bits (321), Expect = e-179
 Identities = 374/392 (95%)
 Strand = Plus / Plus

                                                                       
Query: 58  gaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgctc 117
           ||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||
Sbjct: 8   gaatggacaagtatcacagcagcacccgctttgcacccctgatanacgctccatttgctc 67

                                                                       
Query: 118 tccgtggtgcggttggtacccccaactcgtctttcaacaacatggatgcccttagacact 177
           ||||||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 68  tccgtggtgcctttggtacctccaactcgtctttcaacaacatggatggccttagacact 127

                                                                       
Query: 178 cctcacgcattgggcaagcaaagagctacacatcttctctgttaggagccctgcgacaga 237
           ||||| ||||||||||||||| |||||||||||||||||  |||||||| ||||||||||
Sbjct: 128 cctcaagcattgggcaagcaaggagctacacatcttctcccttaggagctctgcgacaga 187

                                                                       
Query: 238 agatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgttg 297
           |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 188 agatgcctccatctggaaaccgatccctgcatacaagtcgtcccctgtcgactcctgttg 247

                                                                       
Query: 298 cgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 248 cgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacgttct 307

                                                                       
Query: 358 ccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctcttg 417
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 308 ccatctcacaccgtatatttggcgctgcgctgggtgctgccatcatatccattcctcttg 367

                                           
Query: 418 ctaccaggttcggcgtcatgtttgaggtctga 449
           ||||||||||||||||||||||||||||||||
Sbjct: 368 ctaccaggttcggcgtcatgtttgaggtctga 399
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>dbj|AK058482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D05, full
           insert sequence
          Length = 595

 Score =  266 bits (134), Expect = 8e-68
 Identities = 329/394 (83%)
 Strand = Plus / Plus

                                                                       
Query: 57  ggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgct 116
           |||||||| ||||| || |||||  |||| ||||||||||| || |||||||||||||||
Sbjct: 109 ggaatggagaagtaccagagcaaggcccggtttgcacccctcagtgatgctccatttgct 168

                                                                       
Query: 117 ctccgtggtgcggttggtacccccaactcgtctttcaacaacatggatgcccttagacac 176
           ||||| |||||  |||||| | | ||||| || ||||||||||| |||   || ||||| 
Sbjct: 169 ctccgcggtgcccttggtagctcaaactcatccttcaacaacatagatcatctgagacaa 228

                                                                       
Query: 177 tcctcacgcattgggcaagcaaagagctacacatcttctctgttaggagccctgcgacag 236
           |||||| |   ||| ||||| | ||||||||||||||| |   ||||||| ||| |||  
Sbjct: 229 tcctcaagttctggacaagctaggagctacacatcttcacccctaggagctctgagacca 288

                                                                       
Query: 237 aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
           ||||||   |||||||||||||||  ||| || ||||| |||||||||||||||||||||
Sbjct: 289 aagatgttcccatctggaaaccgactcctgcacacaagtcgtcccctgtcggctcctgtt 348

                                                                       
Query: 297 gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
           ||||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||| |||
Sbjct: 349 gcgaaccgcccactgtcaccccatctccctttgaagaagccgcagctgagtgctacgttc 408

                                                                       
Query: 357 tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
           || |||||||||||||| ||||| | ||| ||||| |||| ||| |||||||||||||||
Sbjct: 409 tcaatctcacaccgtatttttggtgctgccctgggagctgtcattatatccattcctctt 468

                                             
Query: 417 gctaccaggttcggcgtcatgtttgaggtctgag 450
           || ||||  ||| || |||||||||| |||||||
Sbjct: 469 gccaccaaattcagcctcatgtttgatgtctgag 502
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>ref|XM_478436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 595

 Score =  258 bits (130), Expect = 2e-65
 Identities = 328/394 (83%)
 Strand = Plus / Plus

                                                                       
Query: 57  ggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgct 116
           |||||||| ||||| || |||||  |||| ||||||||||| || |||||||||||||||
Sbjct: 109 ggaatggagaagtaccagagcaaggcccggtttgcacccctcagtgatgctccatttgct 168

                                                                       
Query: 117 ctccgtggtgcggttggtacccccaactcgtctttcaacaacatggatgcccttagacac 176
           ||||| |||||  |||||| | | ||||| || ||||||||||| |||   || ||||| 
Sbjct: 169 ctccgcggtgcccttggtagctcaaactcatccttcaacaacatagatcatctgagacaa 228

                                                                       
Query: 177 tcctcacgcattgggcaagcaaagagctacacatcttctctgttaggagccctgcgacag 236
           |||||| |   ||| ||||| | ||||||||||||||| |   ||||||| ||| |||  
Sbjct: 229 tcctcaagttctggacaagctaggagctacacatcttcacccctaggagctctgagacca 288

                                                                       
Query: 237 aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
           ||||||   |||||||||||||||  ||| || ||||| |||||||||||||||||||||
Sbjct: 289 aagatgttcccatctggaaaccgactcctgcacacaagtcgtcccctgtcggctcctgtt 348

                                                                       
Query: 297 gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
           || |||||||||||||| |||||||| ||| |||||||||| |||||||| ||||| |||
Sbjct: 349 gcaaaccgcccactgtcaccccatctccctttgaagaagccgcagctgagtgctacgttc 408

                                                                       
Query: 357 tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
           || |||||||||||||| ||||| | ||| ||||| |||| ||| |||||||||||||||
Sbjct: 409 tcaatctcacaccgtatttttggtgctgccctgggagctgtcattatatccattcctctt 468

                                             
Query: 417 gctaccaggttcggcgtcatgtttgaggtctgag 450
           || ||||  ||| || |||||||||| |||||||
Sbjct: 469 gccaccaaattcagcctcatgtttgatgtctgag 502
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>ref|XM_463920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 744

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Plus

                                                                       
Query: 237 aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
           |||||||  |||||||||  |||| |||| || ||||||| ||| |||||||||||||||
Sbjct: 344 aagatgctcccatctggatgccgacccctgcacacaagccatcctctgtcggctcctgtt 403

                                                                       
Query: 297 gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
           || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 404 gctaaccgccccctgtcaccccaccttcctctgaagaagccacagctgagtgctacattc 463

                                                                       
Query: 357 tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
           || ||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| 
Sbjct: 464 tctatctcgcaccgtatatttggtgctgcgttgggtgctgccattatatccattcctctc 523

                                             
Query: 417 gctaccaggttcggcgtcatgtttgaggtctgag 450
           || |||| |||| || |||||||||| |||||||
Sbjct: 524 gccaccaagttcagcctcatgtttgatgtctgag 557



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 56  aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
           ||||||||| ||||||||||||||| |||| ||||| ||| | |||||||||||||||||
Sbjct: 163 aggaatggagaagtatcacagcaactcccgatttgctcccttcagagatgctccatttgc 222

                       
Query: 116 tctccgtggtgc 127
           ||||||||||||
Sbjct: 223 tctccgtggtgc 234
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>gb|AF362741.1|AF362741 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene, complete
            cds; nuclear gene for mitochondrial product
          Length = 2864

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Plus

                                                                        
Query: 237  aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
            |||||||  |||||||||  |||| |||| || ||||||| ||| |||||||||||||||
Sbjct: 2447 aagatgctcccatctggatgccgacccctgcacacaagccatcctctgtcggctcctgtt 2506

                                                                        
Query: 297  gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
            || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 2507 gctaaccgccccctgtcaccccaccttcctctgaagaagccacagctgagtgctacattc 2566

                                                                        
Query: 357  tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
            || ||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| 
Sbjct: 2567 tctatctcgcaccgtatatttggtgctgcgttgggtgctgccattatatccattcctctc 2626

                                              
Query: 417  gctaccaggttcggcgtcatgtttgaggtctgag 450
            || |||| |||| || |||||||||| |||||||
Sbjct: 2627 gccaccaagttcagcctcatgtttgatgtctgag 2660



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                        
Query: 56   aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
            ||||||||| ||||||||||||||| |||| ||||| ||| | |||||||||||||||||
Sbjct: 1587 aggaatggagaagtatcacagcaactcccgatttgctcccttcagagatgctccatttgc 1646

                      
Query: 116  tctccgtggt 125
            ||||||||||
Sbjct: 1647 tctccgtggt 1656
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Plus

                                                                           
Query: 237     aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
               |||||||  |||||||||  |||| |||| || ||||||| ||| |||||||||||||||
Sbjct: 1153853 aagatgctcccatctggatgccgacccctgcacacaagccatcctctgtcggctcctgtt 1153912

                                                                           
Query: 297     gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
               || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 1153913 gctaaccgccccctgtcaccccaccttcctctgaagaagccacagctgagtgctacattc 1153972

                                                                           
Query: 357     tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
               || ||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| 
Sbjct: 1153973 tctatctcgcaccgtatatttggtgctgcgttgggtgctgccattatatccattcctctc 1154032

                                                 
Query: 417     gctaccaggttcggcgtcatgtttgaggtctgag 450
               || |||| |||| || |||||||||| |||||||
Sbjct: 1154033 gccaccaagttcagcctcatgtttgatgtctgag 1154066



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                           
Query: 56      aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
               ||||||||| ||||||||||||||| |||| ||||| ||| | |||||||||||||||||
Sbjct: 1152993 aggaatggagaagtatcacagcaactcccgatttgctcccttcagagatgctccatttgc 1153052

                         
Query: 116     tctccgtggt 125
               ||||||||||
Sbjct: 1153053 tctccgtggt 1153062
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>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1020_C02
          Length = 124578

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Plus

                                                                          
Query: 237    aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
              |||||||  |||||||||  |||| |||| || ||||||| ||| |||||||||||||||
Sbjct: 106377 aagatgctcccatctggatgccgacccctgcacacaagccatcctctgtcggctcctgtt 106436

                                                                          
Query: 297    gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
              || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 106437 gctaaccgccccctgtcaccccaccttcctctgaagaagccacagctgagtgctacattc 106496

                                                                          
Query: 357    tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
              || ||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| 
Sbjct: 106497 tctatctcgcaccgtatatttggtgctgcgttgggtgctgccattatatccattcctctc 106556

                                                
Query: 417    gctaccaggttcggcgtcatgtttgaggtctgag 450
              || |||| |||| || |||||||||| |||||||
Sbjct: 106557 gccaccaagttcagcctcatgtttgatgtctgag 106590



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                          
Query: 56     aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
              ||||||||| ||||||||||||||| |||| ||||| ||| | |||||||||||||||||
Sbjct: 105517 aggaatggagaagtatcacagcaactcccgatttgctcccttcagagatgctccatttgc 105576

                        
Query: 116    tctccgtggt 125
              ||||||||||
Sbjct: 105577 tctccgtggt 105586
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>dbj|AK103260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124C12, full
           insert sequence
          Length = 744

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Plus

                                                                       
Query: 237 aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
           |||||||  |||||||||  |||| |||| || ||||||| ||| |||||||||||||||
Sbjct: 344 aagatgctcccatctggatgccgacccctgcacacaagccatcctctgtcggctcctgtt 403

                                                                       
Query: 297 gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
           || |||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 404 gctaaccgccccctgtcaccccaccttcctctgaagaagccacagctgagtgctacattc 463

                                                                       
Query: 357 tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatccattcctctt 416
           || ||||| |||||||||||||| | |||| ||||||||||||| |||||||||||||| 
Sbjct: 464 tctatctcgcaccgtatatttggtgctgcgttgggtgctgccattatatccattcctctc 523

                                             
Query: 417 gctaccaggttcggcgtcatgtttgaggtctgag 450
           || |||| |||| || |||||||||| |||||||
Sbjct: 524 gccaccaagttcagcctcatgtttgatgtctgag 557



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 56  aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
           ||||||||| ||||||||||||||| |||| ||||| ||| | |||||||||||||||||
Sbjct: 163 aggaatggagaagtatcacagcaactcccgatttgctcccttcagagatgctccatttgc 222

                       
Query: 116 tctccgtggtgc 127
           ||||||||||||
Sbjct: 223 tctccgtggtgc 234
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  204 bits (103), Expect = 3e-49
 Identities = 214/251 (85%)
 Strand = Plus / Plus

                                                                            
Query: 200      gagctacacatcttctctgttaggagccctgcgacagaagatgcctccatctggaaaccg 259
                ||||||||||||||| |   ||||||| ||| |||  ||||||   ||||||||||||||
Sbjct: 20074819 gagctacacatcttcacccctaggagctctgagaccaaagatgttcccatctggaaaccg 20074878

                                                                            
Query: 260      atccctacatacaagccgtcccctgtcggctcctgttgcgaaccgcccactgtctcccca 319
                |  ||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 20074879 actcctgcacacaagtcgtcccctgtcggctcctgttgcaaaccgcccactgtcacccca 20074938

                                                                            
Query: 320      tcttcctctgaagaagccacagctgagcgctacattctccatctcacaccgtatatttgg 379
                ||| ||| |||||||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 20074939 tctccctttgaagaagccgcagctgagtgctacgttctcaatctcacaccgtatttttgg 20074998

                                                                            
Query: 380      cgttgcgctgggtgctgccatcatatccattcctcttgctaccaggttcggcgtcatgtt 439
                 | ||| ||||| |||| ||| ||||||||||||||||| ||||  ||| || |||||||
Sbjct: 20074999 tgctgccctgggagctgtcattatatccattcctcttgccaccaaattcagcctcatgtt 20075058

                           
Query: 440      tgaggtctgag 450
                ||| |||||||
Sbjct: 20075059 tgatgtctgag 20075069



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 56       aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
                ||||||||| ||||| || |||||  |||| ||||||||||| || ||||||||||||||
Sbjct: 20074301 aggaatggagaagtaccagagcaaggcccggtttgcacccctcagtgatgctccatttgc 20074360

                      
Query: 116      tctccg 121
                ||||||
Sbjct: 20074361 tctccg 20074366
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>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1657_A07
          Length = 125217

 Score =  204 bits (103), Expect = 3e-49
 Identities = 214/251 (85%)
 Strand = Plus / Plus

                                                                         
Query: 200   gagctacacatcttctctgttaggagccctgcgacagaagatgcctccatctggaaaccg 259
             ||||||||||||||| |   ||||||| ||| |||  ||||||   ||||||||||||||
Sbjct: 39422 gagctacacatcttcacccctaggagctctgagaccaaagatgttcccatctggaaaccg 39481

                                                                         
Query: 260   atccctacatacaagccgtcccctgtcggctcctgttgcgaaccgcccactgtctcccca 319
             |  ||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 39482 actcctgcacacaagtcgtcccctgtcggctcctgttgcaaaccgcccactgtcacccca 39541

                                                                         
Query: 320   tcttcctctgaagaagccacagctgagcgctacattctccatctcacaccgtatatttgg 379
             ||| ||| |||||||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 39542 tctccctttgaagaagccgcagctgagtgctacgttctcaatctcacaccgtatttttgg 39601

                                                                         
Query: 380   cgttgcgctgggtgctgccatcatatccattcctcttgctaccaggttcggcgtcatgtt 439
              | ||| ||||| |||| ||| ||||||||||||||||| ||||  ||| || |||||||
Sbjct: 39602 tgctgccctgggagctgtcattatatccattcctcttgccaccaaattcagcctcatgtt 39661

                        
Query: 440   tgaggtctgag 450
             ||| |||||||
Sbjct: 39662 tgatgtctgag 39672



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 56    aggaatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgc 115
             ||||||||| ||||| || |||||  |||| ||||||||||| || ||||||||||||||
Sbjct: 38904 aggaatggagaagtaccagagcaaggcccggtttgcacccctcagtgatgctccatttgc 38963

                   
Query: 116   tctccg 121
             ||||||
Sbjct: 38964 tctccg 38969
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>gb|AF362742.1|AF362742 Oryza sativa succinate dehydrogenase subunit 3 (sdh3) gene,
           complete cds; nuclear gene for mitochondrial product
          Length = 764

 Score =  202 bits (102), Expect = 1e-48
 Identities = 213/250 (85%)
 Strand = Plus / Plus

                                                                       
Query: 200 gagctacacatcttctctgttaggagccctgcgacagaagatgcctccatctggaaaccg 259
           ||||||||||||||| |   ||||||| ||| |||  ||||||   ||||||||||||||
Sbjct: 515 gagctacacatcttcacccctaggagctctgagaccaaagatgttcccatctggaaaccg 574

                                                                       
Query: 260 atccctacatacaagccgtcccctgtcggctcctgttgcgaaccgcccactgtctcccca 319
           |  ||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 575 actcctgcacacaagtcgtcccctgtcggctcctgttgcaaaccgcccactgtcacccca 634

                                                                       
Query: 320 tcttcctctgaagaagccacagctgagcgctacattctccatctcacaccgtatatttgg 379
           ||| ||| |||||||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 635 tctccctttgaagaagccgcagctgagtgctacgttctcaatctcacaccgtatttttgg 694

                                                                       
Query: 380 cgttgcgctgggtgctgccatcatatccattcctcttgctaccaggttcggcgtcatgtt 439
            | ||| ||||| |||| ||| ||||||||||||||||| ||||  ||| || |||||||
Sbjct: 695 tgctgccctgggagctgtcattatatccattcctcttgccaccaaattcagcctcatgtt 754

                     
Query: 440 tgaggtctga 449
           ||| ||||||
Sbjct: 755 tgatgtctga 764



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 60  atggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgctctc 119
           ||||| ||||| || |||||  |||| ||||||||||| || ||||||||||||||||||
Sbjct: 1   atggagaagtaccagagcaaggcccggtttgcacccctcagtgatgctccatttgctctc 60

             
Query: 120 cg 121
           ||
Sbjct: 61  cg 62
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>gb|BT017399.1| Zea mays clone EL01N0328G05.c mRNA sequence
          Length = 726

 Score =  125 bits (63), Expect = 2e-25
 Identities = 144/171 (84%)
 Strand = Plus / Plus

                                                                       
Query: 237 aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
           |||||| || || ||||||| |||  ||| ||||| ||| | ||||||||  || |||| 
Sbjct: 256 aagatgtctacacctggaaatcgactcctgcatacgagctgccccctgtcatctgctgta 315

                                                                       
Query: 297 gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
           ||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 316 gcgaaccgcccgctgtcgccccatcttcctctgaagaagccacagttcagcgctactttc 375

                                                              
Query: 357 tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatcc 407
           || ||||| |||||||| || || || |||||||| | |||||||||||||
Sbjct: 376 tctatctcgcaccgtatcttcggtgtcgcgctgggagttgccatcatatcc 426



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 59  aatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgctct 118
           |||||||  |||| |||||||||| |  ||||||||  |||||||  |||| ||||| ||
Sbjct: 114 aatggacctgtataacagcaacactcaatttgcaccattgagagagactccgtttgccct 173

                    
Query: 119 ccgtggtgc 127
           |||||||||
Sbjct: 174 ccgtggtgc 182
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>gb|AY108580.1| Zea mays PCO078974 mRNA sequence
          Length = 816

 Score =  125 bits (63), Expect = 2e-25
 Identities = 144/171 (84%)
 Strand = Plus / Plus

                                                                       
Query: 237 aagatgcctccatctggaaaccgatccctacatacaagccgtcccctgtcggctcctgtt 296
           |||||| || || ||||||| |||  ||| ||||| ||| | ||||||||  || |||| 
Sbjct: 397 aagatgtctacacctggaaatcgactcctgcatacgagctgccccctgtcatctgctgta 456

                                                                       
Query: 297 gcgaaccgcccactgtctccccatcttcctctgaagaagccacagctgagcgctacattc 356
           ||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||| |||
Sbjct: 457 gcgaaccgcccgctgtcgccccatcttcctctgaagaagccacagttcagcgctactttc 516

                                                              
Query: 357 tccatctcacaccgtatatttggcgttgcgctgggtgctgccatcatatcc 407
           || ||||| |||||||| || || || |||||||| | |||||||||||||
Sbjct: 517 tctatctcgcaccgtatcttcggtgtcgcgctgggagttgccatcatatcc 567



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                       
Query: 59  aatggacaagtatcacagcaacacccgctttgcacccctgagagatgctccatttgctct 118
           |||||| |||||| |||||||||| |  ||||||||  |||||||  |||| ||||| ||
Sbjct: 255 aatggagaagtataacagcaacactcaatttgcaccattgagagagactccgtttgccct 314

                    
Query: 119 ccgtggtgc 127
           |||||||||
Sbjct: 315 ccgtggtgc 323
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>emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C21 on chromosome 1p22.2-31.1
             Contains STSs and GSSs, complete sequence
          Length = 143163

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 158   catggatgcccttagacactcc 179
             ||||||||||||||||||||||
Sbjct: 59475 catggatgcccttagacactcc 59454
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>ref|XM_552922.1| Anopheles gambiae str. PEST ENSANGP00000027726
           (ENSANGG00000023827), partial mRNA
          Length = 708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 495 tttcgtcattgggcagaatgc 515
           |||||||||||||||||||||
Sbjct: 678 tttcgtcattgggcagaatgc 658
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     cggaggaaggaatggacaagt 69
              |||||||||||||||||||||
Sbjct: 147858 cggaggaaggaatggacaagt 147878
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>gb|AC121820.2| Mus musculus BAC clone RP23-460N4 from 6, complete sequence
          Length = 178653

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   acagaagatgcctccatctg 252
             ||||||||||||||||||||
Sbjct: 24368 acagaagatgcctccatctg 24349
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>gb|AY639544.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 553 caaaattttatgaataataa 572
           ||||||||||||||||||||
Sbjct: 273 caaaattttatgaataataa 292
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>gb|AY639543.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100910 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 553 caaaattttatgaataataa 572
           ||||||||||||||||||||
Sbjct: 273 caaaattttatgaataataa 292
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>gb|AY639542.1| Cyphophthalmus teyrovskyi voucher MCZ DNA100501 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 478

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 553 caaaattttatgaataataa 572
           ||||||||||||||||||||
Sbjct: 273 caaaattttatgaataataa 292
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>emb|AJ884762.1| Gigaspora rosea dispersed repeat GrosRE3-T3, clone Gros10
          Length = 1550

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 554 aaaattttatgaataataag 573
           ||||||||||||||||||||
Sbjct: 42  aaaattttatgaataataag 23
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>emb|AL365202.19| Human DNA sequence from clone RP11-326A8 on chromosome 9 Contains the
             5' end of the RFX3 gene for regulatory factor X, 3
             (influences HLA class II expression), the 5' end of a
             novel gene and a CpG island, complete sequence
          Length = 177164

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 555   aaattttatgaataataagggaaa 578
             ||||||||||||||||||| ||||
Sbjct: 91531 aaattttatgaataataagtgaaa 91554
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>emb|AL354854.8| Human DNA sequence from clone RP11-572H4 on chromosome 9 Contains
             pseudogene similar to part of a novel gene (KIAA1688), a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 6 (SLC25A6) (ANT3)
             pseudogene and a CpG island, complete sequence
          Length = 169550

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 513   tgcaactgtaggtgcagttgtcat 536
             |||||||||||||||| |||||||
Sbjct: 83555 tgcaactgtaggtgcatttgtcat 83532
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>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence
          Length = 141449

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   tatgaataataagggaaact 580
             ||||||||||||||||||||
Sbjct: 91295 tatgaataataagggaaact 91276
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    catctggaaaccgatcccta 266
              ||||||||||||||||||||
Sbjct: 711327 catctggaaaccgatcccta 711308
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>gb|AC007223.5| Homo sapiens chromosome 16 clone RP11-468I15, complete sequence
          Length = 159520

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   gcccactgtctccccatctt 323
             ||||||||||||||||||||
Sbjct: 63132 gcccactgtctccccatctt 63113
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>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence
          Length = 145042

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   tatgaataataagggaaact 580
             ||||||||||||||||||||
Sbjct: 11635 tatgaataataagggaaact 11654
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>gb|AY953190.1| Uncultured anaerobic bacterium clone A-2A 16S ribosomal RNA gene,
            partial sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 39   cgcggcaacgcggaggaagg 58
            ||||||||||||||||||||
Sbjct: 1066 cgcggcaacgcggaggaagg 1085
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>emb|BX927400.10| Zebrafish DNA sequence from clone CH211-195K18 in linkage group 19,
              complete sequence
          Length = 172655

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 604    aacatcattttgggtgttct 623
              ||||||||||||||||||||
Sbjct: 112136 aacatcattttgggtgttct 112155
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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 543     atcaatcctgcaaaattttatgaa 566
               |||| |||||||||||||||||||
Sbjct: 1103454 atcactcctgcaaaattttatgaa 1103477
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>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence
          Length = 140977

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   tatgaataataagggaaact 580
             ||||||||||||||||||||
Sbjct: 49675 tatgaataataagggaaact 49694
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>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134,
             complete sequence
          Length = 132605

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    cttccgctgcgctctcgccc 36
             ||||||||||||||||||||
Sbjct: 69418 cttccgctgcgctctcgccc 69437
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>emb|AL928732.7| Mouse DNA sequence from clone RP23-403C18 on chromosome 2, complete
            sequence
          Length = 149273

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  gagctacacatcttctctgt 219
            ||||||||||||||||||||
Sbjct: 5974 gagctacacatcttctctgt 5955
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>dbj|AB029488.1| Homo sapiens C11orf21 mRNA, complete cds
          Length = 2967

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 561  tatgaataataagggaaact 580
            ||||||||||||||||||||
Sbjct: 2805 tatgaataataagggaaact 2786


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,260,220
Number of Sequences: 3902068
Number of extensions: 5260220
Number of successful extensions: 104065
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103883
Number of HSP's gapped (non-prelim): 175
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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