ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25o08 |
|---|---|
| Clone Library Name | barley_pub |
>CPSF7_MOUSE (Q8BTV2) Cleavage and polyadenylation specificity factor 7| Length = 471 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Frame = +3 Query: 69 RFKKPP-----LRRPFSLMCLLTLICAPLPPP*FVAYVVKSPPLPSNLHSMHI*SKVPSS 233 R KPP RP S + L+ L P+PPP ++ PP P +H H+ P Sbjct: 214 RVDKPPSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRL 273 Query: 234 SRDAFVPAPCVVP 272 VP P +P Sbjct: 274 PPHLAVPPPGAIP 286
>CPSF7_HUMAN (Q8N684) Cleavage and polyadenylation specificity factor 7| (Cleavage and polyadenylation specificity factor 59 kDa subunit) (CPSF 59 kDa subunit) (Pre-mRNA cleavage factor Im 59-kDa subunit) Length = 471 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Frame = +3 Query: 69 RFKKPP-----LRRPFSLMCLLTLICAPLPPP*FVAYVVKSPPLPSNLHSMHI*SKVPSS 233 R KPP RP S + L+ L P+PPP ++ PP P +H H+ P Sbjct: 214 RVDKPPSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRL 273 Query: 234 SRDAFVPAPCVVP 272 VP P +P Sbjct: 274 PPHLAVPPPGAIP 286
>CPSF7_RAT (Q5XI29) Cleavage and polyadenylation specificity factor 7| Length = 462 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%) Frame = +3 Query: 69 RFKKPP-----LRRPFSLMCLLTLICAPLPPP*FVAYVVKSPPLPSNLHSMHI*SKVPSS 233 R KPP RP S + L+ L P+PPP ++ PP P +H H+ P Sbjct: 205 RVDKPPSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRL 264 Query: 234 SRDAFVPAPCVVP 272 VP P +P Sbjct: 265 PPHLAVPPPGAIP 277
>HIF1A_BOVIN (Q9XTA5) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1| alpha) Length = 823 Score = 30.0 bits (66), Expect = 5.8 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +3 Query: 57 RGQCRFKKPPLRRPFSLMCLLTLICAPLPPP 149 + QC +KKPP M L LIC P+P P Sbjct: 207 QSQCGYKKPP-------MTCLVLICEPIPHP 230
>HIF1A_MOUSE (Q61221) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1| alpha) (ARNT-interacting protein) Length = 836 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 63 QCRFKKPPLRRPFSLMCLLTLICAPLPPP 149 QC +KKPP M L LIC P+P P Sbjct: 209 QCGYKKPP-------MTCLVLICEPIPHP 230
>HIF1A_RAT (O35800) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1| alpha) Length = 825 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 63 QCRFKKPPLRRPFSLMCLLTLICAPLPPP 149 QC +KKPP M L LIC P+P P Sbjct: 209 QCGYKKPP-------MTCLVLICEPIPHP 230
>HIF1A_HUMAN (Q16665) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1| alpha) (ARNT-interacting protein) (Member of PAS protein 1) (MOP1) Length = 826 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 63 QCRFKKPPLRRPFSLMCLLTLICAPLPPP 149 QC +KKPP M L LIC P+P P Sbjct: 209 QCGYKKPP-------MTCLVLICEPIPHP 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,034,177 Number of Sequences: 219361 Number of extensions: 2246830 Number of successful extensions: 5369 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5358 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
