ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26d03 |
|---|---|
| Clone Library Name | barley_pub |
>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 1061 Score = 406 bits (1043), Expect = e-113 Identities = 205/205 (100%), Positives = 205/205 (100%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE Sbjct: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 Query: 184 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 363 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN Sbjct: 73 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 Query: 364 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 543 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE Sbjct: 133 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 Query: 544 AIKKAAESRPAPFLIHQESNVIVRA 618 AIKKAAESRPAPFLIHQESNVIVRA Sbjct: 193 AIKKAAESRPAPFLIHQESNVIVRA 217
>RNE_HAEIN (P44443) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 935 Score = 358 bits (919), Expect = 7e-99 Identities = 176/205 (85%), Positives = 194/205 (94%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 ELRVALVDGQRL+DLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDYGAERHGFLPLKE Sbjct: 13 ELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLKE 72 Query: 184 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 363 IAREYFP +Y GRPNI+D+L EGQEVIVQ++KEERGNKGAALTTF+SLAGSYLVLMPN Sbjct: 73 IAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPN 132 Query: 364 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 543 NPRAGGISRRIEGD+RTELKEAL+SL++P+G+GLIVRTAGVGKS E LQWDL L HWE Sbjct: 133 NPRAGGISRRIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWE 192 Query: 544 AIKKAAESRPAPFLIHQESNVIVRA 618 AIK+A++SRPAPFLIHQES+VIVRA Sbjct: 193 AIKQASQSRPAPFLIHQESDVIVRA 217
>RNE_BUCAP (Q8K9J9) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 968 Score = 325 bits (832), Expect = 9e-89 Identities = 160/205 (78%), Positives = 182/205 (88%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 ELRVALVDGQRLYDLDIES EQKK+NIYKGKITRIEPSLEA F+DYG E+HGFLPLKE Sbjct: 13 ELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYGMEKHGFLPLKE 72 Query: 184 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 363 I++ YFP NY+ R NIKD+LREGQE+IVQI+KEERG KGAALTTFI+LAGSYLVLMPN Sbjct: 73 ISKNYFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTFITLAGSYLVLMPN 132 Query: 364 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 543 NP+ GISRR+EG DR ELKE L+SL++PE MGLI+RTAGVGKS ++LQWDLS RLKHW Sbjct: 133 NPKIAGISRRVEGSDRIELKELLSSLKIPEKMGLIIRTAGVGKSIKSLQWDLSLRLKHWN 192 Query: 544 AIKKAAESRPAPFLIHQESNVIVRA 618 AIKKA++ + APFLI+QESNVIVRA Sbjct: 193 AIKKASKKKSAPFLIYQESNVIVRA 217
>RNE_BUCAI (P57429) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 902 Score = 308 bits (790), Expect = 6e-84 Identities = 157/205 (76%), Positives = 177/205 (86%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 ELRVALVDGQRLYDLDIE G EQKK+NIYKGKITRIEPSLEAAFVDYG E++GFLPLKE Sbjct: 13 ELRVALVDGQRLYDLDIEHSGSEQKKSNIYKGKITRIEPSLEAAFVDYGEEKNGFLPLKE 72 Query: 184 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 363 I++ YFP N+ NIK+VL+EGQEVIVQI KEERG KGAALTTFISLAGSYLVLMPN Sbjct: 73 ISKNYFPENHIETLGFNIKNVLQEGQEVIVQISKEERGTKGAALTTFISLAGSYLVLMPN 132 Query: 364 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 543 +P++GGISRRIEG+DR LKE L LELPE M LI+RTAG GKS E+L+WDLS RL+HW+ Sbjct: 133 SPKSGGISRRIEGNDRIALKELLTLLELPEEMSLIIRTAGAGKSIESLRWDLSLRLQHWK 192 Query: 544 AIKKAAESRPAPFLIHQESNVIVRA 618 I+ A+SR APFLIHQESN+IVRA Sbjct: 193 TIQIIAKSRTAPFLIHQESNIIVRA 217
>RNE_BUCBP (Q89AH3) Putative truncated ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 410 Score = 270 bits (691), Expect = 2e-72 Identities = 132/204 (64%), Positives = 169/204 (82%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 +LR+AL+DGQ+LYDL++E+ +Q+K+NIYKGKI RIEPSLEAAFVDYG +++GFLPLKE Sbjct: 13 KLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYGEKKNGFLPLKE 72 Query: 184 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 363 I+R YFP N S + +IK++L+EGQE IVQIDKEERG KGA LTTFISLAG+YLVLMPN Sbjct: 73 ISRNYFPNNCSNYRHLHIKNILKEGQECIVQIDKEERGTKGALLTTFISLAGNYLVLMPN 132 Query: 364 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 543 P GISR+IEG DR LK+ ++ L +PE MG+I+RT+GVG+S E LQ DL+FR+K+W Sbjct: 133 CPHLEGISRKIEGIDRFHLKKIISMLMVPENMGIIIRTSGVGRSIETLQLDLNFRVKNWY 192 Query: 544 AIKKAAESRPAPFLIHQESNVIVR 615 IKK+AE AP LIH+ESN+++R Sbjct: 193 TIKKSAEINTAPCLIHKESNIVIR 216
>RNG_HAEIN (P45175) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 491 Score = 116 bits (290), Expect = 6e-26 Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 3/201 (1%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 E R+ALV+ L ++ IE NIYKG++TR+ P +++AFVD G E+ FL + Sbjct: 14 ETRIALVETGMLREVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHAAD 73 Query: 184 IAR--EYFPANYSAHGR-PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 354 I E N + +I +++REGQ+++VQ+ KE G KGA LTT I+L +LV Sbjct: 74 IVSHTECVDENEQKQFKVKSISELVREGQDIVVQVVKEPLGTKGARLTTDITLPSRHLVF 133 Query: 355 MPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 534 MP N G+S+RIE ++ +AL E G I+RTA G S E L+ D F + Sbjct: 134 MPENSHV-GVSQRIESEEERARLKALVEPFCDELGGFIIRTATEGASEEELRQDAEFLKR 192 Query: 535 HWEAIKKAAESRPAPFLIHQE 597 W + + P I+ E Sbjct: 193 LWRKVLERKSKYPTKSKIYGE 213
>RNG_SHIFL (P0A9J3) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 104 bits (260), Expect = 2e-22 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 10/199 (5%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G ++ FL + Sbjct: 12 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 71 Query: 184 IAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS 342 I P G +I +++R+GQ+++VQ+ K+ G KGA LTT I+L Sbjct: 72 I----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 127 Query: 343 YLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLS 522 YLV MP G+S+RIE + E + + + E G I+RTA G L D + Sbjct: 128 YLVFMPGASHV-GVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAA 186 Query: 523 FRLKHWEAI---KKAAESR 570 + + W + KK ++R Sbjct: 187 YLKRVWTKVMERKKRPQTR 205
>RNG_ECOLI (P0A9J0) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 104 bits (260), Expect = 2e-22 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 10/199 (5%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G ++ FL + Sbjct: 12 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 71 Query: 184 IAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS 342 I P G +I +++R+GQ+++VQ+ K+ G KGA LTT I+L Sbjct: 72 I----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 127 Query: 343 YLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLS 522 YLV MP G+S+RIE + E + + + E G I+RTA G L D + Sbjct: 128 YLVFMPGASHV-GVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAA 186 Query: 523 FRLKHWEAI---KKAAESR 570 + + W + KK ++R Sbjct: 187 YLKRVWTKVMERKKRPQTR 205
>RNG_ECOL6 (P0A9J1) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 104 bits (260), Expect = 2e-22 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 10/199 (5%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G ++ FL + Sbjct: 12 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 71 Query: 184 IAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS 342 I P G +I +++R+GQ+++VQ+ K+ G KGA LTT I+L Sbjct: 72 I----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 127 Query: 343 YLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLS 522 YLV MP G+S+RIE + E + + + E G I+RTA G L D + Sbjct: 128 YLVFMPGASHV-GVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAA 186 Query: 523 FRLKHWEAI---KKAAESR 570 + + W + KK ++R Sbjct: 187 YLKRVWTKVMERKKRPQTR 205
>RNG_ECO57 (P0A9J2) Ribonuclease G (EC 3.1.4.-) (RNase G) (Cytoplasmic axial| filament protein) Length = 488 Score = 104 bits (260), Expect = 2e-22 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 10/199 (5%) Frame = +1 Query: 4 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 183 E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G ++ FL + Sbjct: 12 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 71 Query: 184 IAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS 342 I P G +I +++R+GQ+++VQ+ K+ G KGA LTT I+L Sbjct: 72 I----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 127 Query: 343 YLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLS 522 YLV MP G+S+RIE + E + + + E G I+RTA G L D + Sbjct: 128 YLVFMPGASHV-GVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAA 186 Query: 523 FRLKHWEAI---KKAAESR 570 + + W + KK ++R Sbjct: 187 YLKRVWTKVMERKKRPQTR 205
>RNE_SYNY3 (P72656) Ribonuclease E homolog (EC 3.1.4.-) (RNase E)| Length = 674 Score = 104 bits (260), Expect = 2e-22 Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 1/182 (0%) Frame = +1 Query: 73 QKKANIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVL 249 Q+ +IY G + I PS++AAF++ G E++GF+ + ++ + I ++L Sbjct: 32 QQVGDIYLGLVDNILPSIDAAFINIGDTEKNGFIHVSDLGPVRLRRTAGS-----ISELL 86 Query: 250 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 429 Q V+VQ+ KE GNKG LT IS+ G Y+VLMP R +SRRI ++ A Sbjct: 87 SPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMPYG-RGVNLSRRINREEERSRLRA 145 Query: 430 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 609 LA L P GMGL+VRT +A+ DL K WE +++ A +R AP L+ ++ + I Sbjct: 146 LAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFI 205 Query: 610 VR 615 R Sbjct: 206 KR 207
>RNE_PORPU (P51211) Ribonuclease E homolog (EC 3.1.4.-) (RNase E)| Length = 511 Score = 90.9 bits (224), Expect = 3e-18 Identities = 60/180 (33%), Positives = 103/180 (57%), Gaps = 4/180 (2%) Frame = +1 Query: 82 ANIYKGKITRIEPSLEAAFVDYGAERH-GFLPLKE---IAREYFPANYSAHGRPNIKDVL 249 ++IY G + +I + AAFVD G + GF+ + + + ++Y+ N I ++L Sbjct: 35 SDIYLGTVDKIFSGINAAFVDLGKNEYSGFIHISDTGPLKKKYYINN--------ITNIL 86 Query: 250 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 429 Q+++VQI KE NKG LT I+L+G Y+VLMP + +A ISR+I +D +A Sbjct: 87 TIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPFS-QAICISRKIYDEDERHYLKA 145 Query: 430 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 609 LA L P MGL+ R + +G E + +L+ + W I+K+A + AP L++++ +++ Sbjct: 146 LAILIKPPTMGLLFRPSAIGIDEEIILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIV 205
>CATR_ACILW (O33945) Probable cat1 operon transcriptional activator (ORFR1)| Length = 303 Score = 36.2 bits (82), Expect = 0.080 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Frame = +1 Query: 220 HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE 399 H PN+ ++ + + V + E + + LAG L++ P PR G + + Sbjct: 150 HSDPNVSSIVLHEERLAVALPMESPMARESTPLPVHQLAGEKLIVYPKEPRPGFADQVLN 209 Query: 400 GDDRTELK--EALASLELPEGMGLIVRTAGV---GKSAEALQWDLSFRL 531 DR +++ + + E+ +GL+ GV SA ++ D+ +RL Sbjct: 210 ILDRHDVQPGQVMEVREIQTALGLVAAEFGVCVIPASARQMRHDVHYRL 258
>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) Length = 709 Score = 35.0 bits (79), Expect = 0.18 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Frame = +1 Query: 7 LRVALVDGQRLYDL--DIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 180 +++A VD ++ IE E + IYKGK+TR+ AFV + G + + Sbjct: 594 VKIAAVDSNAAKNVMGRIEEIVAEVEAGVIYKGKVTRLADF--GAFVAIVGNKEGLVHIS 651 Query: 181 EIAREYFPANYSAHGRPNIKDVLREGQEV---IVQIDKEER 294 +IA E + D L+ GQEV +V+ID++ R Sbjct: 652 QIAEERV---------EKVSDYLQVGQEVNVKVVEIDRQGR 683
>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa| bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3214 Score = 34.7 bits (78), Expect = 0.23 Identities = 25/90 (27%), Positives = 39/90 (43%) Frame = +1 Query: 31 QRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPAN 210 +R Y L++ES HE+ K +ITR E ++ H F KE+ R Sbjct: 2031 KRNYQLELESLNHEKGKLQREVDRITRAHAVAEKNIQHLNSQIHSFRDEKELERLQICQR 2090 Query: 211 YSAHGRPNIKDVLREGQEVIVQIDKEERGN 300 S H +K+ + E ++Q K E+ N Sbjct: 2091 KSDH----LKEQFEKSHEQLLQNIKAEKEN 2116
>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)| (Polynucleotide phosphorylase) (PNPase) (CAP87K) Length = 709 Score = 32.3 bits (72), Expect = 1.2 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%) Frame = +1 Query: 7 LRVALVDGQRLYDL--DIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 180 +++A DG++ IE E + IY GK+TRI AFV G + G + + Sbjct: 595 VKIAATDGEKAKHAISRIEEITAEIEVGRIYAGKVTRIVDF--GAFVAIGGGKEGLVHIS 652 Query: 181 EIAREYFPANYSAHGRPNIKDVLREGQEV---IVQIDKEER 294 +IA + + D L+ GQE +++ID++ R Sbjct: 653 QIADKRV---------EKVADYLQVGQETSVKVLEIDRQGR 684
>C81E1_GLYEC (P93147) Cytochrome P450 81E1 (EC 1.14.13.89) (Isoflavone| 2'-hydroxylase) (P450 91A4) (CYP GE-3) Length = 499 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +1 Query: 442 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE 564 ++ +G+ L + AG SA L+W +S L H E +KK + Sbjct: 290 QIIKGLALAMLLAGTDSSAVTLEWSMSNLLNHPEVLKKVKD 330
>RS1_SYNP7 (O33698) 30S ribosomal protein S1| Length = 295 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = +1 Query: 40 YDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 189 + L +E+ + +K + +GK+ E S + A++D G + FLP +E A Sbjct: 14 FALALEAQSLDSQKGQLVRGKVC--EYSTDGAYIDIGGKAPAFLPKREAA 61
>RNE_GUITH (O78453) Ribonuclease E homolog (EC 3.1.4.-) (RNase E)| Length = 429 Score = 30.8 bits (68), Expect = 3.4 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Frame = +1 Query: 85 NIYKGKITR--IEPSLEAAFVDYGAERH-GFLPLKEIAREYFPANYSAHGRPNIKDVLRE 255 +IY G I R I P+L AAFV +ER+ GF+P + ++ + + + Sbjct: 36 DIYFGFIPRQSIYPTLNAAFVTLDSERNQGFIPFTLLIKK------------SNQQFVIP 83 Query: 256 GQEVIVQIDKEERGNKGAALTTFISL 333 ++Q+ KE NK A LT+ I L Sbjct: 84 NSVFLIQVIKEPTINKPATLTSHIFL 109
>SELA_PSEAE (Q9HV01) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)| (Cysteinyl-tRNA(Sec) selenium transferase) (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec) synthase) Length = 468 Score = 30.4 bits (67), Expect = 4.4 Identities = 25/74 (33%), Positives = 32/74 (43%) Frame = +1 Query: 229 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDD 408 P + + L EG EV V + G G+ LA + L L P PR R+ G Sbjct: 369 PALGEALGEGWEVAVV---DALGMIGSGAQPVARLASAALCLRPRQPR------RLRGRA 419 Query: 409 RTELKEALASLELP 450 L+EAL L LP Sbjct: 420 LRNLEEALRGLPLP 433
>C81D1_ARATH (Q9FG65) Cytochrome P450 81D1 (EC 1.14.-.-)| Length = 502 Score = 30.4 bits (67), Expect = 4.4 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 Query: 442 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE 564 ++ +G+ LI+ AG SA L+W LS L H + I KA + Sbjct: 294 QIIKGIILIMVIAGTNTSAVTLEWALSNLLNHPDVISKARD 334
>SREC2_MOUSE (P59222) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) Length = 833 Score = 30.0 bits (66), Expect = 5.7 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = -1 Query: 518 KSHCSASADLPTPAVRTISPMPSGSSRLASASFNSVRSSPSIRREMP 378 K +A+A P PA R +P PSG R S NS P + E P Sbjct: 663 KHSAAAAAPSPPPAGRKAAPSPSGRKRTPS---NSSVQPPGLTEEAP 706
>VL2_HPV32 (P36757) Minor capsid protein L2| Length = 476 Score = 30.0 bits (66), Expect = 5.7 Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -1 Query: 506 SASADLPTPAVRTISPMPSGSSRLAS-ASFNSVRSSPSIRREMPPARG 366 SAS TPAV ISP P+ + R+AS S N V S P R P G Sbjct: 134 SASGPSSTPAVLDISP-PTNTIRVASTTSHNPVYSDPFTLRPSLPVEG 180
>GAMP_PROCL (Q7M3P2) Gastrolith matrix protein (Fragment)| Length = 96 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +1 Query: 295 GNKGAALTTFISLAG-SYLVLMPNNPRAGGI 384 G+ G ++F S +G YLV++PNNP GG+ Sbjct: 65 GSTGFGSSSFGSTSGLPYLVVIPNNPAVGGL 95
>TEX_BORPE (Q45388) Protein tex| Length = 791 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/62 (29%), Positives = 31/62 (50%) Frame = +1 Query: 133 AFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 312 AFVD G + G + + +A ++ + +DV+R GQ V V++ + + K A Sbjct: 685 AFVDIGVHQDGLVHISALAEKFVK---------DPRDVVRVGQTVTVKVLEVDVARKRVA 735 Query: 313 LT 318 LT Sbjct: 736 LT 737
>PNCB_BORPE (Q7VTF7) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 151 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI-DKEERGNKGAALT 318 A RHG LPL + EY A + R LR+ Q +++ KE RG+ G AL+ Sbjct: 217 AMRHGVLPLGTMGHEYLQACQALGPR------LRDSQVFALEVWAKEYRGDLGIALS 267
>PNCB_BORPA (Q7W5G3) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 151 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI-DKEERGNKGAALT 318 A RHG LPL + EY A + R LR+ Q +++ KE RG+ G AL+ Sbjct: 217 AMRHGVLPLGTMGHEYLQACQALGPR------LRDSQVFALEVWAKEYRGDLGIALS 267
>PNCB_BORBR (Q7WCZ8) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 405 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 151 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI-DKEERGNKGAALT 318 A RHG LPL + EY A + R LR+ Q +++ KE RG+ G AL+ Sbjct: 217 AMRHGVLPLGTMGHEYLQACQALGPR------LRDSQVFALEVWAKEYRGDLGIALS 267
>APOL6_HUMAN (Q9BWW8) Apolipoprotein-L6 (Apolipoprotein L-VI) (ApoL-VI)| Length = 343 Score = 29.3 bits (64), Expect = 9.8 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 23/138 (16%) Frame = +1 Query: 226 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN-------------- 363 R K+ ++++ D+E+R ++ +++ AG + + N Sbjct: 132 RSKNKEAQARAEDILPTYDQEDREDEEEK-ADYVTAAGKIIYNLRNTLKYAKKNVRAFWK 190 Query: 364 ---NPRAGGISRR------IEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 516 NPR ++R + R ++++A A L M R G SA +L +D Sbjct: 191 LRANPRLANATKRLLTTGQVSSRSRVQVQKAFAGTTL--AMTKNARVLGGVMSAFSLGYD 248 Query: 517 LSFRLKHWEAIKKAAESR 570 L+ K W+ +K+ A ++ Sbjct: 249 LATLSKEWKHLKEGARTK 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,075,537 Number of Sequences: 219361 Number of extensions: 1803708 Number of successful extensions: 5352 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5160 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5341 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
