ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, com... 46 0.11
2gb|AC132568.3| Mus musculus BAC clone RP24-484M20 from chromosom... 46 0.11
3gb|AC165162.4| Mus musculus BAC clone RP23-173L24 from chromosom... 44 0.44
4gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, comp... 44 0.44
5gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, compl... 44 0.44
6gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, compl... 44 0.44
7gb|AC092099.4| Homo sapiens BAC clone RP11-616A20 from 7, comple... 44 0.44
8gb|AC120000.17| Mus musculus chromosome 3, clone RP24-133F9, com... 44 0.44
9gb|AF165144.4| Homo sapiens chromosome 8 clone CTA-393A7 map 8ce... 44 0.44
10gb|AC154323.3| Mus musculus BAC clone RP23-307K19 from chromosom... 44 0.44
11gb|U38378.1| Caenorhabditis elegans cosmid R11F4, complete sequence 42 1.7
12gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome... 42 1.7
13gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosom... 42 1.7
14gb|AC108699.3| Homo sapiens 3q BAC RP11-13I12 (Roswell Park Canc... 42 1.7
15emb|BX511106.5| Mouse DNA sequence from clone RP24-82J19 on chro... 42 1.7
16gb|AC069066.22| Homo sapiens 3 BAC RP11-261E7 (Roswell Park Canc... 42 1.7
17gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, comple... 42 1.7
18emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in... 42 1.7
19gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosom... 42 1.7
20emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chro... 42 1.7
21gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosom... 42 1.7
22gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome... 40 6.9
23gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosom... 40 6.9
24gb|AC131336.9| Mus musculus chromosome 1, clone RP23-96A20, comp... 40 6.9
25gb|AY350715.1| Arabidopsis arenosa clone BAC Aer1B10, complete s... 40 6.9
26gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.9
27gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
28emb|AJ000018.1|SSSP13J9 Sus scrofa genomic microsatellite sequen... 40 6.9
29gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosom... 40 6.9
30gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosom... 40 6.9
31gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome... 40 6.9
32ref|XM_652382.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 6.9
33emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 i... 40 6.9
34emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chro... 40 6.9
35emb|AL662799.16| Human DNA sequence from clone XXbac-294E21 on c... 40 6.9
36emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chro... 40 6.9
37emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on ch... 40 6.9
38emb|AL390736.6| Human DNA sequence from clone RP11-209J19 on chr... 40 6.9
39emb|AL161903.19| Human DNA sequence from clone RP11-175A4 on chr... 40 6.9
40emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chr... 40 6.9
41emb|AL031368.2|HS662N3 Human DNA sequence from clone RP4-662N3 o... 40 6.9
42emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chr... 40 6.9
43emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 ... 40 6.9
44emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in ... 40 6.9
45gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, comp... 40 6.9
46gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, comp... 40 6.9
47emb|AL627164.8| Zebrafish DNA sequence from clone RP71-1I20 in l... 40 6.9
48gb|AC011087.6| Homo sapiens, clone RP11-21L20, complete sequence 40 6.9
49gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Can... 40 6.9
50gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR ... 40 6.9
51gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q... 40 6.9
52gb|AC090517.2|AC090517 Homo sapiens chromosome 15 clone RP11-31H... 40 6.9
53dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
54gb|AF309689.1|AF309689 Neurospora crassa chromosome 4 pdx-1 region 40 6.9
55gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosom... 40 6.9
56gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cance... 40 6.9
57gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complet... 40 6.9
58gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, comple... 40 6.9
59gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-467C18, comp... 40 6.9
60emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, ... 40 6.9
61gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26,... 40 6.9
62gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq2... 40 6.9
63gb|U00066.1| Caenorhabditis elegans cosmid R12B2, complete sequence 40 6.9
64gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.9
65emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in ... 40 6.9
66emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 ... 40 6.9
67emb|AL837520.26| Mouse DNA sequence from clone RP23-412O4 on chr... 40 6.9
68emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 ... 40 6.9
69gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome... 40 6.9
70gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.9
71emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on ch... 40 6.9
72gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complet... 40 6.9
73emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on ch... 40 6.9
74emb|AL691422.15| Mouse DNA sequence from clone RP23-85B20 on chr... 40 6.9
75emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chrom... 40 6.9
76gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosom... 40 6.9
77emb|AL807240.12| Mouse DNA sequence from clone RP23-394F6 on chr... 40 6.9 
>gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, complete sequence
          Length = 220031

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 313   taatttttcttcttgataatttccaattttccata 347
             |||||| ||||||| ||||||| ||||||||||||
Sbjct: 55080 taatttatcttctttataatttgcaattttccata 55046
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>gb|AC132568.3| Mus musculus BAC clone RP24-484M20 from chromosome 1, complete sequence
          Length = 133079

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 291    gtgtgtgtatgtgtatgtcatgt 313
              |||||||||||||||||||||||
Sbjct: 108190 gtgtgtgtatgtgtatgtcatgt 108168
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>gb|AC165162.4| Mus musculus BAC clone RP23-173L24 from chromosome 3, complete sequence
          Length = 211699

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 292   tgtgtgtatgtgtatgtcatgt 313
             ||||||||||||||||||||||
Sbjct: 93515 tgtgtgtatgtgtatgtcatgt 93536
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>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence
          Length = 206029

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 291    gtgtgtgtatgtgtatgtcatgtaat 316
              |||||||||||||||| |||||||||
Sbjct: 197193 gtgtgtgtatgtgtatctcatgtaat 197218
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>gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, complete sequence
          Length = 120644

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 291   gtgtgtgtatgtgtatgtcatgtaat 316
             |||||||||||||||| |||||||||
Sbjct: 61030 gtgtgtgtatgtgtatctcatgtaat 61005
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>gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, complete sequence
          Length = 135955

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 291    gtgtgtgtatgtgtatgtcatgtaat 316
              |||||||||||||||| |||||||||
Sbjct: 104057 gtgtgtgtatgtgtatctcatgtaat 104032
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>gb|AC092099.4| Homo sapiens BAC clone RP11-616A20 from 7, complete sequence
          Length = 33234

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 291   gtgtgtgtatgtgtatgtcatgtaat 316
             |||||||||||||||| |||||||||
Sbjct: 22530 gtgtgtgtatgtgtatctcatgtaat 22505
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>gb|AC120000.17| Mus musculus chromosome 3, clone RP24-133F9, complete sequence
          Length = 149389

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 292   tgtgtgtatgtgtatgtcatgt 313
             ||||||||||||||||||||||
Sbjct: 47028 tgtgtgtatgtgtatgtcatgt 47007
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>gb|AF165144.4| Homo sapiens chromosome 8 clone CTA-393A7 map 8cen, complete sequence
          Length = 110994

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 305   atgtcatgtaatttttcttctt 326
             ||||||||||||||||||||||
Sbjct: 92458 atgtcatgtaatttttcttctt 92437
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>gb|AC154323.3| Mus musculus BAC clone RP23-307K19 from chromosome 14, complete sequence
          Length = 191902

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 291    gtgtgtgtatgtgtatgtcatg 312
              ||||||||||||||||||||||
Sbjct: 152836 gtgtgtgtatgtgtatgtcatg 152815
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>gb|U38378.1| Caenorhabditis elegans cosmid R11F4, complete sequence
          Length = 27371

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   gtgtgtgtatgtgtatgtcat 311
             |||||||||||||||||||||
Sbjct: 11874 gtgtgtgtatgtgtatgtcat 11894
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>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence
          Length = 198403

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 315    atttttcttcttgataatttc 335
              |||||||||||||||||||||
Sbjct: 178121 atttttcttcttgataatttc 178101
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>gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosome 17, complete
             sequence
          Length = 174143

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   atttttcttcttgataatttc 335
             |||||||||||||||||||||
Sbjct: 63210 atttttcttcttgataatttc 63230
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>gb|AC108699.3| Homo sapiens 3q BAC RP11-13I12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 151580

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                          
Query: 292   tgtgtgtatgtgtatgtc-atgtaatttt 319
             |||||||||||||||||| ||||||||||
Sbjct: 74331 tgtgtgtatgtgtatgtctatgtaatttt 74359
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>emb|BX511106.5| Mouse DNA sequence from clone RP24-82J19 on chromosome 11 Contains the
             5' end of a novel gene, complete sequence
          Length = 35405

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 288   gtcgtgtgtgtatgtgtatgt 308
             |||||||||||||||||||||
Sbjct: 31171 gtcgtgtgtgtatgtgtatgt 31151
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>gb|AC069066.22| Homo sapiens 3 BAC RP11-261E7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 146446

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Plus

                                         
Query: 292  tgtgtgtatgtgtatgtc-atgtaatttt 319
            |||||||||||||||||| ||||||||||
Sbjct: 8680 tgtgtgtatgtgtatgtctatgtaatttt 8708
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>gb|AC010885.8| Homo sapiens BAC clone RP11-368K23 from 2, complete sequence
          Length = 177385

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 288    gtcgtgtgtgtatgtgtatgt 308
              |||||||||||||||||||||
Sbjct: 143689 gtcgtgtgtgtatgtgtatgt 143669
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>emb|CR788257.9| Zebrafish DNA sequence from clone DKEY-244H24 in linkage group 1,
             complete sequence
          Length = 198219

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 347   aacttatattactcatttgagtctt 371
             ||||| |||||||||||||||||||
Sbjct: 80396 aacttttattactcatttgagtctt 80420
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>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete
             sequence
          Length = 196310

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   tttttcttcttgataatttcc 336
             |||||||||||||||||||||
Sbjct: 11639 tttttcttcttgataatttcc 11619
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>emb|AL671848.7| Mouse DNA sequence from clone RP23-110K5 on chromosome X, complete
              sequence
          Length = 190964

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 291    gtgtgtgtatgtgtatgtcat 311
              |||||||||||||||||||||
Sbjct: 120119 gtgtgtgtatgtgtatgtcat 120139
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>gb|AC158404.2| Mus musculus BAC clone RP24-112K13 from chromosome 12, complete sequence
          Length = 174961

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 316    tttttcttcttgataatttcc 336
              |||||||||||||||||||||
Sbjct: 139535 tttttcttcttgataatttcc 139515
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>gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome 13, complete sequence
          Length = 212570

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              |||||||||||||| |||||||||
Sbjct: 146020 gtgtgtgtatgtgtgtgtcatgta 146043
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>gb|AC147985.3| Mus musculus BAC clone RP24-402C11 from chromosome 19, complete sequence
          Length = 170479

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    gtgtgtgtatgtgtatgtca 310
              ||||||||||||||||||||
Sbjct: 114021 gtgtgtgtatgtgtatgtca 114040
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>gb|AC131336.9| Mus musculus chromosome 1, clone RP23-96A20, complete sequence
          Length = 121355

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||||||||||| |||||||||
Sbjct: 84748 gtgtgtgtatgtgtgtgtcatgta 84725
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>gb|AY350715.1| Arabidopsis arenosa clone BAC Aer1B10, complete sequence
          Length = 78945

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   aatttttcttcttgataatt 333
             ||||||||||||||||||||
Sbjct: 60702 aatttttcttcttgataatt 60721
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>gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-25N12, complete
              sequence
          Length = 223266

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    tcgtgtgtgtatgtgtatgt 308
              ||||||||||||||||||||
Sbjct: 146378 tcgtgtgtgtatgtgtatgt 146397
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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041J17, complete sequence
          Length = 148829

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 293   gtgtgtatgtgtatgtcatgtaat 316
             ||||||||||||||| ||||||||
Sbjct: 43553 gtgtgtatgtgtatgccatgtaat 43530
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>emb|AJ000018.1|SSSP13J9 Sus scrofa genomic microsatellite sequence, clone P13J9
          Length = 573

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 290 cgtgtgtgtatgtgtatgtcatgt 313
           ||||||||||||||| ||||||||
Sbjct: 293 cgtgtgtgtatgtgtgtgtcatgt 270
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>gb|AC129304.6| Mus musculus BAC clone RP24-462H23 from chromosome 10, complete sequence
          Length = 153772

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              |||||||| |||||||||||||||
Sbjct: 147017 gtgtgtgtgtgtgtatgtcatgta 146994
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>gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosome 10, complete
             sequence
          Length = 173543

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||||| |||||||||||||||
Sbjct: 80775 gtgtgtgtgtgtgtatgtcatgta 80752
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>gb|AC125517.4| Mus musculus BAC clone RP24-261P6 from chromosome 3, complete sequence
          Length = 193517

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    ttagttaaaggctccatttt 402
              ||||||||||||||||||||
Sbjct: 134381 ttagttaaaggctccatttt 134362
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>ref|XM_652382.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (1.t00089)
           partial mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 tttttcttcttgataatttc 335
           ||||||||||||||||||||
Sbjct: 336 tttttcttcttgataatttc 317
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>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9,
              complete sequence
          Length = 162252

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 316    tttttcttcttgataatttc 335
              ||||||||||||||||||||
Sbjct: 149415 tttttcttcttgataatttc 149396
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>emb|BX323860.7| Human DNA sequence from clone RP11-552D4 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 142067

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tgtgtgtatgtgtatgtcat 311
             ||||||||||||||||||||
Sbjct: 39629 tgtgtgtatgtgtatgtcat 39610
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>emb|AL662799.16| Human DNA sequence from clone XXbac-294E21 on chromosome 6 contains the
              gene for a novel protein similar to lysophospholipase II
              (LYPLA2), the KNSL2 gene for kinesin-like 2, the PHF1 gene
              for PHD finger protein 1, the gene for divalent cation
              tolerant protein CUTA, the SYNGAP1 gene for synaptic Ras
              GTPase activating protein 1 homolog and five CpG islands,
              complete sequence
          Length = 136021

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    gtgtgtgtatgtgtatgtca 310
              ||||||||||||||||||||
Sbjct: 133499 gtgtgtgtatgtgtatgtca 133480
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>emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chromosome 9 Contains a novel
              gene (FLJ20808) and a ribosomal protein L23a (RPL23A)
              pseudogene, complete sequence
          Length = 150771

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    gtcatgtaatttttcttctt 326
              ||||||||||||||||||||
Sbjct: 140710 gtcatgtaatttttcttctt 140691
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>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two
             novel genes (FLJ36774) and five CpG islands, complete
             sequence
          Length = 158335

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 289   tcgtgtgtgtatgtgtatgt 308
             ||||||||||||||||||||
Sbjct: 30885 tcgtgtgtgtatgtgtatgt 30904
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>emb|AL390736.6| Human DNA sequence from clone RP11-209J19 on chromosome 13 Contains a
             novel gene, complete sequence
          Length = 125681

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||||||||||| |||||||||
Sbjct: 54081 gtgtgtgtatgtgtgtgtcatgta 54058
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>emb|AL161903.19| Human DNA sequence from clone RP11-175A4 on chromosome 6 Contains the
             3' end of the SYNGAP1 gene for synaptic Ras GTPase
             activating protein 1 homolog (rat), complete sequence
          Length = 47104

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gtgtgtgtatgtgtatgtca 310
             ||||||||||||||||||||
Sbjct: 35593 gtgtgtgtatgtgtatgtca 35574
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>emb|AL157402.19| Human DNA sequence from clone RP11-553K8 on chromosome 1q31.2-31.3
             Contains the ATP6V1G3 gene for H+ transporting ATPase
             lysosomal 13kDa V1 subunit G isoform 3, two novel genes, a
             prostatic binding protein (PBP) pseudogene and the 5' end
             of the PTPRC gene for receptor type protein tyrosine
             phosphatase C, complete sequence
          Length = 210331

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   cttgataatttccaattttc 343
             ||||||||||||||||||||
Sbjct: 75770 cttgataatttccaattttc 75789
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>emb|AL031368.2|HS662N3 Human DNA sequence from clone RP4-662N3 on chromosome Xp21.1-21.3,
             complete sequence
          Length = 143890

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||||||||||||||| |||||
Sbjct: 11322 gtgtgtgtatgtgtatgttatgta 11345
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>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the
             3' end of the Nipsnap1 gene for 4-nitrophenylphosphatase
             domain and non-neuronal SNAP25-like protein homolog 1 (C.
             elegans), a novel gene, a ribosomal protein L17 (Rpl17)
             pseudogene, the Nefh gene for neurofilament heavy
             polypeptide, the Ap1b1 gene for adaptor protein complex
             AP-1 beta 1 subunit, the gene for the ortholog of human
             RAS-related protein on chromosome 22, the gene for the
             ortholog of human growth arrest-specific 2 like 1 GAS2L1
             and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gtgtgtatgtgtatgtcatg 312
             ||||||||||||||||||||
Sbjct: 23923 gtgtgtatgtgtatgtcatg 23942
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>emb|CR559945.12| Zebrafish DNA sequence from clone CH211-195E19 in linkage group 13,
             complete sequence
          Length = 186151

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   taagttatcaatttagttaa 390
             ||||||||||||||||||||
Sbjct: 28618 taagttatcaatttagttaa 28599
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>emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in linkage group 23,
             complete sequence
          Length = 171486

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 285   ctggtcgtgtgtgtatgtgt 304
             ||||||||||||||||||||
Sbjct: 49888 ctggtcgtgtgtgtatgtgt 49869
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>gb|AC116105.12| Mus musculus chromosome 1, clone RP23-23A4, complete sequence
          Length = 214780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              |||||||||||||| |||||||||
Sbjct: 199803 gtgtgtgtatgtgtgtgtcatgta 199826
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>gb|AC099544.2| Homo sapiens chromosome 3 clone RP11-600G19, complete sequence
          Length = 184019

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   ttttgtggcagcactgcatc 255
             ||||||||||||||||||||
Sbjct: 54692 ttttgtggcagcactgcatc 54711
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>emb|AL627164.8| Zebrafish DNA sequence from clone RP71-1I20 in linkage group 11,
             complete sequence
          Length = 84892

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||| |||||||||||||||||
Sbjct: 72130 gtgtgtatatgtgtatgtcatgta 72153
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>gb|AC011087.6| Homo sapiens, clone RP11-21L20, complete sequence
          Length = 157456

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    gtgtgtgtatgtgtatgtca 310
              ||||||||||||||||||||
Sbjct: 111576 gtgtgtgtatgtgtatgtca 111557
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>gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 183357

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                             
Query: 292    tgtgtgtatgtgtatg--tcatgtaattttt 320
              ||||||||||||||||  |||||||||||||
Sbjct: 142072 tgtgtgtatgtgtatgtatcatgtaattttt 142102
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>gb|AC005500.2| Homo sapiens 22q11 PAC Clone Clone p52f6 In DGCR Region, complete
             sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tgtgtgtatgtgtatgtcat 311
             ||||||||||||||||||||
Sbjct: 62148 tgtgtgtatgtgtatgtcat 62129
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>gb|AC007731.16| Homo sapiens chromosome 22 clone b562f10 map 22q11, complete sequence
          Length = 182617

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tgtgtgtatgtgtatgtcat 311
             ||||||||||||||||||||
Sbjct: 67190 tgtgtgtatgtgtatgtcat 67171
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>gb|AC090517.2|AC090517 Homo sapiens chromosome 15 clone RP11-31H5 map 15q21.3, complete
             sequence
          Length = 185446

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   taatttccaattttccataa 348
             ||||||||||||||||||||
Sbjct: 27195 taatttccaattttccataa 27176
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 293      gtgtgtatgtgtatgtcatgtaat 316
                ||||||||||||||| ||||||||
Sbjct: 18940355 gtgtgtatgtgtatgccatgtaat 18940332
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>gb|AF309689.1|AF309689 Neurospora crassa chromosome 4 pdx-1 region
          Length = 36030

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 270   gcagcagtctccatcctggtcgtg 293
             ||||||||||||||| ||||||||
Sbjct: 18249 gcagcagtctccatcgtggtcgtg 18272
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>gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosome 17, complete
             sequence
          Length = 198374

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||||||||||||||| |||||
Sbjct: 97939 gtgtgtgtatgtgtatgtgatgta 97916
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>gb|AC153575.5| Mus musculus 6 BAC RP23-157O3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 215023

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              |||||||||||||||||| |||||
Sbjct: 184690 gtgtgtgtatgtgtatgtaatgta 184713
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>gb|AC113610.4| Homo sapiens BAC clone RP11-373H2 from 2, complete sequence
          Length = 96559

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   gtcatgtaatttttcttctt 326
             ||||||||||||||||||||
Sbjct: 65390 gtcatgtaatttttcttctt 65371
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>gb|AC135966.2| Homo sapiens chromosome 3 clone RP11-94D3, complete sequence
          Length = 162867

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ttttgtggcagcactgcatc 255
             ||||||||||||||||||||
Sbjct: 22230 ttttgtggcagcactgcatc 22211
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>gb|AC093424.3| Homo sapiens chromosome 1 clone RP11-467C18, complete sequence
          Length = 153854

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   ttttcttcttgataatttcc 336
             ||||||||||||||||||||
Sbjct: 45837 ttttcttcttgataatttcc 45818
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>emb|BX005396.5| Zebrafish DNA sequence from clone CH211-128N12, complete sequence
          Length = 177531

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 292    tgtgtgtatgtgtatgtcat 311
              ||||||||||||||||||||
Sbjct: 161335 tgtgtgtatgtgtatgtcat 161316
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>gb|AC002477.1|AC002477 Human PAC clone RP3-327A19 from Xq25-q26, complete sequence
          Length = 124095

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              |||||||| |||||||||||||||
Sbjct: 120570 gtgtgtgtgtgtgtatgtcatgta 120593
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>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence
          Length = 129690

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gtgtgtgtatgtgtatgtca 310
             ||||||||||||||||||||
Sbjct: 56123 gtgtgtgtatgtgtatgtca 56104
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>gb|U00066.1| Caenorhabditis elegans cosmid R12B2, complete sequence
          Length = 34646

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 285   ctggtcgtgtgtgtatgtgtatgt 308
             ||||| ||||||||||||||||||
Sbjct: 33541 ctggtggtgtgtgtatgtgtatgt 33518
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 238     ttgtggcagcactgcatcct 257
               ||||||||||||||||||||
Sbjct: 2876431 ttgtggcagcactgcatcct 2876412
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>emb|BX537249.8| Zebrafish DNA sequence from clone DKEY-77B17 in linkage group 20,
             complete sequence
          Length = 92426

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tcgtgtgtgtatgtgtatgt 308
             ||||||||||||||||||||
Sbjct: 53178 tcgtgtgtgtatgtgtatgt 53159
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>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24,
              complete sequence
          Length = 188067

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 290    cgtgtgtgtatgtgtatgtcatgt 313
              ||||||||||||||||| ||||||
Sbjct: 177114 cgtgtgtgtatgtgtatttcatgt 177091
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>emb|AL837520.26| Mouse DNA sequence from clone RP23-412O4 on chromosome 2, complete
              sequence
          Length = 128625

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 290    cgtgtgtgtatgtgtatgtcatgt 313
              ||||||||||||||||||| ||||
Sbjct: 103500 cgtgtgtgtatgtgtatgtgatgt 103523
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>emb|AL929284.12| Zebrafish DNA sequence from clone CH211-160H23 in linkage group 15,
             complete sequence
          Length = 179458

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   gtgtgtgtatgtgtatgtcatgta 314
             |||||||||||||| |||||||||
Sbjct: 75194 gtgtgtgtatgtgtgtgtcatgta 75217
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>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   tgtgtatgtgtatgtcatgt 313
             ||||||||||||||||||||
Sbjct: 79822 tgtgtatgtgtatgtcatgt 79803
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 293      gtgtgtatgtgtatgtcatgtaat 316
                ||||||||||||||| ||||||||
Sbjct: 19099004 gtgtgtatgtgtatgccatgtaat 19098981
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>emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on chromosome 9, complete
             sequence
          Length = 192913

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tcgtgtgtgtatgtgtatgt 308
             ||||||||||||||||||||
Sbjct: 60188 tcgtgtgtgtatgtgtatgt 60169
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>gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complete sequence
          Length = 184937

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              ||||||||||||||||| ||||||
Sbjct: 141494 gtgtgtgtatgtgtatggcatgta 141517
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>emb|AL845300.11| Mouse DNA sequence from clone RP23-397A17 on chromosome 2, complete
            sequence
          Length = 224818

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 289  tcgtgtgtgtatgtgtatgt 308
            ||||||||||||||||||||
Sbjct: 6692 tcgtgtgtgtatgtgtatgt 6711
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>emb|AL691422.15| Mouse DNA sequence from clone RP23-85B20 on chromosome X, complete
              sequence
          Length = 164287

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              ||||||||||||||||| ||||||
Sbjct: 117269 gtgtgtgtatgtgtatggcatgta 117246
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>emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chromosome 13, complete
              sequence
          Length = 231247

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 291    gtgtgtgtatgtgtatgtcatgta 314
              |||||||||||||| |||||||||
Sbjct: 200594 gtgtgtgtatgtgtgtgtcatgta 200617
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>gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosome 9, complete sequence
          Length = 219361

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 289   tcgtgtgtgtatgtgtatgt 308
             ||||||||||||||||||||
Sbjct: 47864 tcgtgtgtgtatgtgtatgt 47845
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>emb|AL807240.12| Mouse DNA sequence from clone RP23-394F6 on chromosome X, complete
             sequence
          Length = 115145

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   cagttttgtggcagcactgc 252
             ||||||||||||||||||||
Sbjct: 15186 cagttttgtggcagcactgc 15205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,637,208
Number of Sequences: 3902068
Number of extensions: 5637208
Number of successful extensions: 311853
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 311269
Number of HSP's gapped (non-prelim): 587
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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