ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25n20 |
|---|---|
| Clone Library Name | barley_pub |
>PPT1_MOUSE (O88531) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 55.8 bits (133), Expect = 6e-08 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%) Frame = +2 Query: 209 IVLHGIGDQCGNNGIASFTDELAEWS--GSKGYCIEIGRGSWD----SWLMPLQDQANVV 370 ++ HG+GD C N ++ E G +EIG+ + S+ + + Q N+V Sbjct: 36 VIWHGMGDSCCNPMSMGVIKKMVEKEIPGIYVLSLEIGKNMMEDVENSFFLNVNVQVNMV 95 Query: 371 CKKVKEMEELREGYSIIGLSQGNLIGRAVIEYCDGGPPVKNFISIGG 511 C+ +++ +L++GY+ IG SQG RAV + C PP+ IS+GG Sbjct: 96 CQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCP-TPPMMTLISVGG 141
>PPT1_MACFA (Q8HXW6) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 53.5 bits (127), Expect = 3e-07 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Frame = +2 Query: 209 IVLHGIGDQCGNNGIASFTDELAEWS--GSKGYCIEIGRGSWD----SWLMPLQDQANVV 370 ++ HG+GD C N ++ E G +EIG+ + S+ + + Q V Sbjct: 36 VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTV 95 Query: 371 CKKVKEMEELREGYSIIGLSQGNLIGRAVIEYCDGGPPVKNFISIGG 511 C+ + + +L++GY+ +G SQG RAV + C PP+ N IS+GG Sbjct: 96 CQTLAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMINLISVGG 141
>PPT1_HUMAN (P50897) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 53.5 bits (127), Expect = 3e-07 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Frame = +2 Query: 209 IVLHGIGDQCGNNGIASFTDELAEWS--GSKGYCIEIGRGSWD----SWLMPLQDQANVV 370 ++ HG+GD C N ++ E G +EIG+ + S+ + + Q V Sbjct: 36 VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTV 95 Query: 371 CKKVKEMEELREGYSIIGLSQGNLIGRAVIEYCDGGPPVKNFISIGG 511 C+ + + +L++GY+ +G SQG RAV + C PP+ N IS+GG Sbjct: 96 CQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMINLISVGG 141
>PPT1_BOVIN (P45478) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 52.8 bits (125), Expect = 5e-07 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Frame = +2 Query: 209 IVLHGIGDQCGNNGIASFTDELAEWS--GSKGYCIEIGRGSWD----SWLMPLQDQANVV 370 ++ HG+GD C N ++ E G +EIG+ + S+ + + Q V Sbjct: 36 VIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLREDVENSFFLNVNSQVTTV 95 Query: 371 CKKVKEMEELREGYSIIGLSQGNLIGRAVIEYCDGGPPVKNFISIGG 511 C+ + + +L++GY+ +G SQG RAV + C PP+ N IS+GG Sbjct: 96 CQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP-SPPMVNLISVGG 141
>PPT1_RAT (P45479) Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22)| (Palmitoyl-protein hydrolase 1) Length = 306 Score = 49.7 bits (117), Expect = 5e-06 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Frame = +2 Query: 209 IVLHGIGDQCGNNGIASFTDELAEWS--GSKGYCIEIGRGSWD----SWLMPLQDQANVV 370 ++ HG+GD C N ++ E G +EIG+ + S+ + + Q + Sbjct: 36 VIWHGMGDSCCNPMSMGSIKKMVEKEIPGIYVLSLEIGKNMVEDVENSFFLNVNLQVGMA 95 Query: 371 CKKVKEMEELREGYSIIGLSQGNLIGRAVIEYCDGGPPVKNFISIGG 511 C+ +++ +L+ GY+ IG SQG RAV + C PP+ IS+GG Sbjct: 96 CQILEKDPKLQHGYNAIGFSQGGQFLRAVAQRCP-TPPMMTLISVGG 141
>KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 3) Length = 409 Score = 30.8 bits (68), Expect = 2.2 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Frame = +2 Query: 236 CGNNGIASFTDELAEWSGSKGYCIEI-GRGSWDSWLMPLQDQANVVCKKVKEMEELREGY 412 C +GI L E S I G+W + LQ VVC KV+E E+ Sbjct: 246 CFESGIPLLKSRLQELPDSDNITIAFPDDGAWKRFYKQLQHFPMVVCNKVREGEQ----- 300 Query: 413 SIIGLSQGNLIGRAVI 460 I+ + +G+ GR V+ Sbjct: 301 RIVRIKEGDPRGRHVV 316
>DIS3_SCHPO (P37202) Mitotic control protein dis3| Length = 970 Score = 30.4 bits (67), Expect = 2.9 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = +1 Query: 265 RRARGVVGIQGILHRNWERIMGFLVNATSRSGKCGLQE 378 R A + GIL RNW +G + NAT K G Q+ Sbjct: 355 RNAHPTAKVVGILKRNWRPYVGHVDNATIAQSKGGSQQ 392
>VGLM_SEOUR (P28729) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1134 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +2 Query: 233 QCGNNGIASFTDELAEWSGSKGYCIEIGRGSWDSWLMPLQDQANVVCKKVKEMEELREGY 412 Q N FTDE EW G L+D N+V K + E L E Sbjct: 924 QSFNTSNIHFTDERIEWRDPDGM---------------LRDHINIVISKDIDFENLAENP 968 Query: 413 SIIGLSQGNLIG 448 +GL N+ G Sbjct: 969 CKVGLQAANIEG 980
>VGLM_SEOUS (P17880) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1133 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +2 Query: 233 QCGNNGIASFTDELAEWSGSKGYCIEIGRGSWDSWLMPLQDQANVVCKKVKEMEELREGY 412 Q N FTDE EW G L+D N+V K + E L E Sbjct: 923 QSFNTSNIHFTDERIEWRDPDGM---------------LRDHINIVISKDIDFENLAENP 967 Query: 413 SIIGLSQGNLIG 448 +GL N+ G Sbjct: 968 CKVGLQAANIEG 979
>VGLM_SEOU8 (P33455) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1133 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +2 Query: 233 QCGNNGIASFTDELAEWSGSKGYCIEIGRGSWDSWLMPLQDQANVVCKKVKEMEELREGY 412 Q N FTDE EW G L+D N+V K + E L E Sbjct: 923 QSFNTSNIHFTDERIEWRDPDGM---------------LRDHINIVISKDIDFENLAENP 967 Query: 413 SIIGLSQGNLIG 448 +GL N+ G Sbjct: 968 CKVGLQAANIEG 979
>VGLM_HANTB (P28728) Envelope polyprotein precursor (M polyprotein) [Contains:| Glycoprotein G1; Glycoprotein G2] Length = 1133 Score = 29.3 bits (64), Expect = 6.5 Identities = 21/72 (29%), Positives = 26/72 (36%) Frame = +2 Query: 233 QCGNNGIASFTDELAEWSGSKGYCIEIGRGSWDSWLMPLQDQANVVCKKVKEMEELREGY 412 Q N FTDE EW G L+D N+V K + E L E Sbjct: 923 QSFNTSNIHFTDERIEWRDPDGM---------------LRDHINIVISKDIDFENLAENP 967 Query: 413 SIIGLSQGNLIG 448 +GL N+ G Sbjct: 968 CKVGLQAANIEG 979
>CCD21_MOUSE (Q8BMK0) Coiled-coil domain-containing protein 21| Length = 761 Score = 28.9 bits (63), Expect = 8.5 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 479 VHHHSTQLLPAQLSSPEKDQLCCNLHEAL 393 + H Q P SSP+ QL C LH+ L Sbjct: 648 LQEHLRQAQPGSSSSPDSAQLACELHQEL 676
>HRCA_SYNP6 (Q5N3M2) Heat-inducible transcription repressor hrcA| Length = 353 Score = 28.9 bits (63), Expect = 8.5 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -3 Query: 488 LPVVHHHSTQLLPAQLSSPEKDQLCCNLHEALPF-PLPSC 372 L ++ TQLLP L+ P DQ+ + LP P+ SC Sbjct: 267 LELLEGEQTQLLPLMLADPAADQVRVRIGSELPLAPIRSC 306 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,645,012 Number of Sequences: 219361 Number of extensions: 994382 Number of successful extensions: 3121 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3054 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3113 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
