ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7... 32 1.2
2Y1249_ARCFU (O29019) Hypothetical protein AF1249 32 1.6
3VMSA_HBVIA (P24025) Major surface antigen precursor 32 1.6
4ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot... 31 2.7
5HIPK2_MESAU (Q9WUM7) Homeodomain-interacting protein kinase 2 (E... 31 3.5
6GAS7_HUMAN (O60861) Growth-arrest-specific protein 7 (GAS-7) 31 3.5
7VMSA_HBVYW (P03138) Major surface antigen precursor 30 6.0
8OLIG2_CHICK (Q90XB3) Oligodendrocyte transcription factor 2 30 7.9
9VMSA_HBVAY (P03139) Major surface antigen precursor 30 7.9
10ACH3_CAEEL (P54244) Acetylcholine receptor, alpha-type subunit d... 30 7.9
11SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter fa... 30 7.9
12ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 prot... 30 7.9

>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1243

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/87 (27%), Positives = 31/87 (35%)
 Frame = +2

Query: 86   PCGGXXXXXXXXXXXXRSTCQPPDLSSPTTRQHTIPSLHLYYLLQCPWSWLPPSSYPATA 265
            PC               S   P   SSP     + P   +  L QCPWS LP +S P  +
Sbjct: 835  PCHPSPSPFSPISSQVSSNPSPHPTSSPLPFSSSTPEFPVP-LSQCPWSSLPTTSPPTFS 893

Query: 266  VMAASASSLGTCFPALTWSSSLSSRNA 346
               +  +     FP    +SS  S  A
Sbjct: 894  PTCSQVTLSSPFFPPCPSTSSFPSTTA 920



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>Y1249_ARCFU (O29019) Hypothetical protein AF1249|
          Length = 140

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +1

Query: 166 AHYKAAYYTILAFVLFVAVPVELATAFFLPSHSRDGRLRV----FAWYLLPCAYVVLLLV 333
           AHY     T LA  +  A+P+   T  F    +++G LR     F+  LL  A V++LL 
Sbjct: 53  AHYSVDAITALAITIIAAIPLTAVTERF----AKNGELRAYYISFSLILLFFAAVMILLF 108

Query: 334 ISEC 345
           ++ C
Sbjct: 109 VNTC 112



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>VMSA_HBVIA (P24025) Major surface antigen precursor|
          Length = 388

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 84  CPVVAGLPHSCPGPDHRAPPASRRTCLRPLQGSILYHPCICT 209
           CP++ G   +  GP         RTC  P QG+ +Y  C CT
Sbjct: 269 CPLIPGSSTTSTGPC--------RTCTTPAQGTSMYPSCCCT 302



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>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 167 AKTGPAAGRWSAVVRARTRVREPSHHRARPSCGTAGGEAEGSMECS 30
           A+T PA G WS+VV    R+   +H    P   + G    G +  S
Sbjct: 633 ARTSPAGGTWSSVVSGVPRLSPKTHRPRSPRQSSIGNSPSGPVLAS 678



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>HIPK2_MESAU (Q9WUM7) Homeodomain-interacting protein kinase 2 (EC 2.7.11.1)|
           (Mx-interacting protein kinase) (PKM)
          Length = 1168

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = -3

Query: 565 GYHSVTCRTIKFIPPSM--SSSVTTIFPWSSPKLILEQYI----STGY 440
           G HS  C   K IPPS   S++V+T  P  +P L  EQ I    STG+
Sbjct: 45  GSHSKLCSQSKNIPPSQPASTTVSTSLPIPNPSLPYEQTIIFPGSTGH 92



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>GAS7_HUMAN (O60861) Growth-arrest-specific protein 7 (GAS-7)|
          Length = 412

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 217 QQIVQMQGWYSMLPCSGRRQ-VRRLAGGARWSGPGQE*GSPATTGHAPAVVPP 62
           Q ++   GW S L   GRR  V        W  P    G PA+ G   + +PP
Sbjct: 11  QTVILPPGWQSYLSPQGRRYYVNTTTNETTWERPSSSPGIPASPGSHRSSLPP 63



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>VMSA_HBVYW (P03138) Major surface antigen precursor|
          Length = 388

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 84  CPVVAGLPHSCPGPDHRAPPASRRTCLRPLQGSILYHPCICT 209
           CP++ G   +  GP         RTC+   QG+ +Y  C CT
Sbjct: 269 CPLIPGSSTTSTGPC--------RTCMTTAQGTSMYPSCCCT 302



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>OLIG2_CHICK (Q90XB3) Oligodendrocyte transcription factor 2|
          Length = 298

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 12  IHHDEHTAFHATLCFATGGTTAGACPVVAGLPHSCPGPDHRAPPASRRTCLRPLQG 179
           I+   H AFH   C A  G  +   P   G P S P      PPA+  +   P  G
Sbjct: 174 IYGGHHAAFHPAACPAGMGAHSAPLPAHPGHPASHPAHHPILPPAAVSSASLPGSG 229



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>VMSA_HBVAY (P03139) Major surface antigen precursor|
          Length = 388

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 84  CPVVAGLPHSCPGPDHRAPPASRRTCLRPLQGSILYHPCICT 209
           CP++ G   +  G        S RTC  P QG  +Y  C CT
Sbjct: 269 CPLIPGSSTTSTG--------SCRTCTTPAQGISMYPSCCCT 302



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>ACH3_CAEEL (P54244) Acetylcholine receptor, alpha-type subunit deg-3 precursor|
          Length = 564

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 586 LTPAISLGYHSVTCR-TIKFIPPSMSSSVTTIFPWSSPKLILEQYIST 446
           L PAI    +++TCR  I+F P    +   TI  W++ K  L+ Y  T
Sbjct: 176 LYPAI----YTITCRLNIRFFPYDRQNCTLTISSWTNSKSALDYYADT 219



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>SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter family member 2A1|
           (Solute carrier family 21 member 2) (Prostaglandin
           transporter) (PGT)
          Length = 643

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 87  PVVAGL-PHSCPGPDHRAPPASRRTCLRPLQGSILYHPCICTICCSARGAGY 239
           P VA + P S P   H  PPA RR CL P     ++HP      C   G  Y
Sbjct: 422 PAVAEVYPPSTPSSIHPQPPACRRDCLCP---DSVFHP-----VCGDNGVEY 465



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>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 167 AKTGPAAGRWSAVVRARTRVREPSHHRARPSCGTAGGEAEGSMECS 30
           A+T P+ G WS+VV    R+   +H    P   + G    G +  S
Sbjct: 663 ARTSPSGGTWSSVVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVLAS 708


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,445,514
Number of Sequences: 219361
Number of extensions: 1944463
Number of successful extensions: 6610
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6606
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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